View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11610_high_9 (Length: 249)
Name: NF11610_high_9
Description: NF11610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11610_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 36121134 - 36120889
Alignment:
| Q |
1 |
ttgttaaactgaaccaattgaattgttaaccctcaaaacaaaaataatatttgtaatcctgacaccctaagctttccaatgagtggtcatttgctcaaaa |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36121134 |
ttgttaaactgaaccaattgaatggttaaccctcaaaacaaaaattatatttgtaatcctgacaccctaagctttccaatgagtggtcgtttgctcaaaa |
36121035 |
T |
|
| Q |
101 |
tggatatcgtttggtattttaattaaattgtgaaagttaaggtactgatgctggaatttgcagggtggaccctgcgggtttgacatagccatacaaatca |
200 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36121034 |
cggatattgtttagtattttaattaaattgtgaaagttaaggtactgatgctggaatttgcagggtggaccctgcgggtttgacatagccatacaaaccg |
36120935 |
T |
|
| Q |
201 |
gtaagtgagatgttcggaacaaaaggatcgtcttttcatctcactc |
246 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
36120934 |
gtaagtgagatgttcggaacatgaggatcgtcttttcatgtcactc |
36120889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 40566735 - 40566490
Alignment:
| Q |
1 |
ttgttaaactgaaccaattgaattgttaaccctcaaaacaaaaataatatttgtaatcctgacaccctaagctttccaatgagtggtcatttgctcaaaa |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
40566735 |
ttgttaaactgaaccaattgaatggttaaccctcaaaacaaaaattatatttgtaatcctgacaccctaagctttccaatgagtggtcgttagctcaaaa |
40566636 |
T |
|
| Q |
101 |
tggatatcgtttggtattttaattaaattgtgaaagttaaggtactgatgctggaatttgcagggtggaccctgcgggtttgacatagccatacaaatca |
200 |
Q |
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| T |
40566635 |
cggatattgtttagtattttaattaaattgtgaaagttaaggtactgatgctggaatttgcagggtggaccctgcaggtttgacatagccatacaaaccg |
40566536 |
T |
|
| Q |
201 |
gtaagtgagatgttcggaacaaaaggatcgtcttttcatctcactc |
246 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
40566535 |
gtaagtgagatgttcggaacatgaggatcgtcttttcatgtcactc |
40566490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 34697102 - 34697146
Alignment:
| Q |
101 |
tggatatcgtttggtattttaattaaattgtgaaagttaaggtac |
145 |
Q |
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||||||||||||| ||||||||||||||| | ||| ||||||||| |
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| T |
34697102 |
tggatatcgtttgatattttaattaaattttcaaatttaaggtac |
34697146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 34719514 - 34719558
Alignment:
| Q |
101 |
tggatatcgtttggtattttaattaaattgtgaaagttaaggtac |
145 |
Q |
| |
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||||||||||||| ||||||||||||||| | ||| ||||||||| |
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| T |
34719514 |
tggatatcgtttgatattttaattaaattttcaaatttaaggtac |
34719558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 38812128 - 38812378
Alignment:
| Q |
1 |
ttgttaaactgaaccaattgaattgttaaccctcaaaacaaaaataatatttgtaatcctgacaccctaagctttccaatgagtggtcatttgctcaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
38812128 |
ttgttaaactgaaccaattgaatggttaaccctcaaaacaaaaattatatttgtaatcctgacaccctacgctttccaatgagtggtcgtttgctcaaaa |
38812227 |
T |
|
| Q |
101 |
tggatatcgtttggtattttaattaaattgtgaaagttaaggtactgatgctggaatttgcagggtggaccctgcgggtttgacat-----agccataca |
195 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38812228 |
cggatatcatttggtattttaattaaattgtgaaagttaaggtactgatgctggaatttgcagggtggaccctgcgggtttgacatatgtgagccataca |
38812327 |
T |
|
| Q |
196 |
aatcagtaagtgagatgttcggaacaaaaggatcgtcttttcatctcactc |
246 |
Q |
| |
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|| | ||||||||||||||||||||| ||||| |||||||||| |||||| |
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| T |
38812328 |
aaccggtaagtgagatgttcggaacatgaggatagtcttttcatgtcactc |
38812378 |
T |
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