View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11610_low_11 (Length: 241)
Name: NF11610_low_11
Description: NF11610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11610_low_11 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 38811912 - 38812136
Alignment:
| Q |
19 |
tttgtgtgaaattcgtgtagacatacctgtggtaaaattagcataactctctgaatataggtcatatgctaatgattcttaattcactacaaagaagaca |
118 |
Q |
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| T |
38811912 |
tttgtgtgaaattcctgtagacatacctgtggtaaaattagcataactctctgaatataggtcatatgctaatgattgttaatccactgcaaagaagaca |
38812011 |
T |
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| Q |
119 |
aaatttcctacagtttagacacaagagttgttaaatttcattaagtatagtaggag-caagctgcctacaagttcgagaaagtttcagtcatgtttctgt |
217 |
Q |
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| T |
38812012 |
aaatttcctacagtttagacacaagagttgttaaatttcattaagtatagtaggagaaaagctccctacaagtttgagaaagtttcggtcatgtttctgt |
38812111 |
T |
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| Q |
218 |
accaa-ccccgctcttttgttaaac |
241 |
Q |
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|| || ||| |||||||||||||| |
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| T |
38812112 |
acaaatacccactcttttgttaaac |
38812136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 36121350 - 36121126
Alignment:
| Q |
19 |
tttgtgtgaaattcgtgtagacatacctgtggtaaaattagcataactctctgaatataggtcatatgctaatgattcttaattcactacaaagaagaca |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || | |||||||||| |
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| T |
36121350 |
tttgtgtgaaattcgtgtaaacatacctgtggtaaaattagcataactctctgaaaataggtcatatgttaatgattcttaatccaatgtaaagaagaca |
36121251 |
T |
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| Q |
119 |
aaatttcctacagtttagacacaagagttgttaaatttcattaagtatagtaggag-caagctgcctacaagttcgagaaagtttcagtcatgtttctgt |
217 |
Q |
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| T |
36121250 |
aaatttcctatagtttagacactagagttgttaaatttcattaagtatagtaggagaaaagctgcctacaagtttgagaaagtttcagtcatgtttatgt |
36121151 |
T |
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| Q |
218 |
accaa-ccccgctcttttgttaaac |
241 |
Q |
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| T |
36121150 |
accaatacccgctcttttgttaaac |
36121126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 40566951 - 40566727
Alignment:
| Q |
19 |
tttgtgtgaaattcgtgtagacatacctgtggtaaaattagcataactctctgaatataggtcatatgctaatgattcttaattcactacaaagaagaca |
118 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||| || | |||||||||| |
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| T |
40566951 |
tttgtgtgaaattcgtgtaaacatacctctggtaaaattagcataactctctgaaaataggtcatatgttaatgattcttaatccaatgtaaagaagaca |
40566852 |
T |
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| Q |
119 |
aaatttcctacagtttagacacaagagttgttaaatttcattaagtatagtaggag-caagctgcctacaagttcgagaaagtttcagtcatgtttctgt |
217 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
40566851 |
aaatttcctatagtttagacactagagttgttaaatttcattaagtatagtaggagaaaagctgcctacaagtttgagaaagtttcagtcatgtttatgt |
40566752 |
T |
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| Q |
218 |
accaa-ccccgctcttttgttaaac |
241 |
Q |
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||||| |||||||||||||||||| |
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| T |
40566751 |
accaatacccgctcttttgttaaac |
40566727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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