View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11610_low_13 (Length: 233)

Name: NF11610_low_13
Description: NF11610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11610_low_13
NF11610_low_13
[»] chr7 (4 HSPs)
chr7 (1-230)||(30408216-30408446)
chr7 (1-230)||(30394599-30394830)
chr7 (132-182)||(23747323-23747374)
chr7 (128-189)||(1110411-1110473)
[»] chr3 (2 HSPs)
chr3 (3-72)||(2057042-2057111)
chr3 (3-67)||(22295025-22295089)
[»] chr4 (3 HSPs)
chr4 (124-216)||(13298521-13298614)
chr4 (130-189)||(55314494-55314554)
chr4 (132-179)||(9318706-9318754)
[»] chr6 (3 HSPs)
chr6 (125-189)||(2732929-2732994)
chr6 (125-154)||(9997224-9997253)
chr6 (132-219)||(9194405-9194493)
[»] chr1 (2 HSPs)
chr1 (132-184)||(11766186-11766237)
chr1 (132-200)||(6025962-6026031)
[»] chr5 (4 HSPs)
chr5 (126-189)||(19115101-19115164)
chr5 (124-189)||(11257720-11257786)
chr5 (3-49)||(18875594-18875640)
chr5 (131-182)||(41015013-41015065)
[»] chr8 (4 HSPs)
chr8 (132-189)||(8282852-8282910)
chr8 (132-189)||(13851011-13851067)
chr8 (144-188)||(13869848-13869891)
chr8 (129-172)||(18737689-18737733)
[»] chr2 (2 HSPs)
chr2 (133-174)||(41631902-41631944)
chr2 (126-189)||(16733713-16733777)
[»] scaffold0491 (1 HSPs)
scaffold0491 (129-172)||(4388-4432)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 30408446 - 30408216
Alignment:
Q  1 ttgatgatggttatcgctggcgaaagtatggacagaaggttgtcaaagggaatccaaacccaaggtagtcatactgctttttctttatgcatctgcaggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30408446 ttgatgatggttatcgctggcgaaagtatggacagaaggttgtcaaagggaatccaaacccaaggtagtcatactgctttttctttatgcatctgcaggc 30408347  T
Q  101 ctgtttaga-ggaaatactgtcaatgtagcgaaatttgaacaaattgctattgtttgtgatatgctaattagtacaaaatgttttcaaattgtgtctata 199  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30408346 ctgtttagaaggaaatactgttaatgtagcgaaatttgaacaagtggctattgtttgtgatattctaattagtacaaaatgttttcaaattgtgtctata 30408247  T
Q  200 gtggcattatagcactgctggctgctgcata 230  Q
    |||||||||||||||||||||||||||||||    
T  30408246 gtggcattatagcactgctggctgctgcata 30408216  T

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Target: chr7; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 30394830 - 30394599
Alignment:
Q  1 ttgatgatggttatcgctggcgaaagtatggacagaaggttgtcaaagggaatccaaacccaaggtagtcatactgctttttctttatgcatctgcaggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  30394830 ttgatgatggttatcgctggcgaaagtatggacagaaggttgtcaaagggaatccaaacccaaggtagtcatattgctttttctttatgcatctgcagat 30394731  T
Q  101 ctgtttagaggaaatactgtcaatgtagcgaaatttgaacaaattgctattgtttgtgatatg--ctaattagtacaaaatgttttcaaattgtgtctat 198  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |   ||||||||||||||||||||||||| |||| |||    
T  30394730 ctgtttagaggaaatactgtcaatgtagtgaaatttgaacaaattgctattgtttgtgagaagatataattagtacaaaatgttttcaaatagtgtgtat 30394631  T
Q  199 agtggcattatagcactgctggctgctgcata 230  Q
     | || ||||||||||||||||||| ||||||    
T  30394630 cgcggtattatagcactgctggctgatgcata 30394599  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 23747323 - 23747374
Alignment:
Q  132 aatttgaacaaattgctattgtt-tgtgatatgctaattagtacaaaatgtt 182  Q
    ||||||||||||| ||||||||| |||||||||||| |||||||||| ||||    
T  23747323 aatttgaacaaatagctattgttctgtgatatgctagttagtacaaactgtt 23747374  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 1110473 - 1110411
Alignment:
Q  128 gcgaaatttgaacaaattgctattgttt-gtgatatgctaattagtacaaaatgttttcaaat 189  Q
    |||||||||||||||||||||||||||| | ||||||||| ||||| | || |||| ||||||    
T  1110473 gcgaaatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgttgtcaaat 1110411  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 2057042 - 2057111
Alignment:
Q  3 gatgatggttatcgctggcgaaagtatggacagaaggttgtcaaagggaatccaaacccaaggtagtcat 72  Q
    |||||||||||||| ||||| || ||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  2057042 gatgatggttatcggtggcggaaatatggacagaaagttgtcaaaggaaatcccaacccaaggtagtcat 2057111  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 22295025 - 22295089
Alignment:
Q  3 gatgatggttatcgctggcgaaagtatggacagaaggttgtcaaagggaatccaaacccaaggta 67  Q
    |||||||||||||||||||| || ||||| |||||||| || | ||| ||||| ||||| |||||    
T  22295025 gatgatggttatcgctggcgtaaatatgggcagaaggtggtaagaggcaatcctaaccctaggta 22295089  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 13298521 - 13298614
Alignment:
Q  124 tgtagcgaaatttgaacaaattgctattgtt-tgtgatatgctaattagtacaaaatgttttcaaattgtgtctatagtggcattatagcactg 216  Q
    ||||||| |||||||||||||  |||||||| |||||||||||| |||||||||| || | |||||| ||| ||||| ||||| ||||||||||    
T  13298521 tgtagcggaatttgaacaaatcactattgttctgtgatatgctatttagtacaaagtgctgtcaaatagtgactataatggcactatagcactg 13298614  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 55314494 - 55314554
Alignment:
Q  130 gaaatttgaacaaattgctattgtt-tgtgatatgctaattagtacaaaatgttttcaaat 189  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||| |||| ||||||    
T  55314494 gaaatttgaacaaattgctattgttctgcgatatgctaattagtacaaagtgttatcaaat 55314554  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 9318706 - 9318754
Alignment:
Q  132 aatttgaacaaattgctattgttt-gtgatatgctaattagtacaaaat 179  Q
    ||||||||||||||  |||||||| ||||||||||| ||||||||||||    
T  9318706 aatttgaacaaattcatattgtttagtgatatgctatttagtacaaaat 9318754  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 2732929 - 2732994
Alignment:
Q  125 gtagcgaaatttgaacaaattgctattgttt-gtgatatgctaattagtacaaaatgttttcaaat 189  Q
    |||| ||||||||||||||| |||||||||| | ||||||||| ||||||||||||||| ||||||    
T  2732929 gtagtgaaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaat 2732994  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 154
Target Start/End: Complemental strand, 9997253 - 9997224
Alignment:
Q  125 gtagcgaaatttgaacaaattgctattgtt 154  Q
    ||||||||||||||||||||||||||||||    
T  9997253 gtagcgaaatttgaacaaattgctattgtt 9997224  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 9194493 - 9194405
Alignment:
Q  132 aatttgaacaaattgctattgtt-tgtgatatgctaattagtacaaaatgttttcaaattgtgtctatagtggcattatagcactgctg 219  Q
    |||| |||||||||||||||||| ||  ||| | || ||||||||||||||| |||||| |||  ||||| ||| |||| |||||||||    
T  9194493 aattggaacaaattgctattgttctgctatacggtatttagtacaaaatgttgtcaaatagtggttatagcggctttatggcactgctg 9194405  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 11766237 - 11766186
Alignment:
Q  132 aatttgaacaaattgctattgtttgtgatatgctaattagtacaaaatgtttt 184  Q
    ||||||||||||| |||||||||| |||||||||| |||||||||| ||||||    
T  11766237 aatttgaacaaatagctattgttt-tgatatgctatttagtacaaagtgtttt 11766186  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 6026031 - 6025962
Alignment:
Q  132 aatttgaacaaattgctattgttt-gtgatatgctaattagtacaaaatgttttcaaattgtgtctatag 200  Q
    ||||||||||||| | |||||||  | ||||||||| ||||||||||||||| |||||| ||| ||||||    
T  6026031 aatttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgttgtcaaatagtggctatag 6025962  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 19115164 - 19115101
Alignment:
Q  126 tagcgaaatttgaacaaattgctattgtttgtgatatgctaattagtacaaaatgttttcaaat 189  Q
    |||||||||||||||| |||||| |||||||  ||||| || ||||||||||| ||| ||||||    
T  19115164 tagcgaaatttgaacagattgctgttgtttgcaatatgatatttagtacaaaacgttgtcaaat 19115101  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 11257720 - 11257786
Alignment:
Q  124 tgtagcgaaatttgaacaaattgctattgtt-tgtgatatgctaattagtacaaaatgttttcaaat 189  Q
    ||||||| ||| ||||||||| ||||||||| |  ||||||||| ||||||||||||||| ||||||    
T  11257720 tgtagcggaatatgaacaaatcgctattgttatacgatatgctatttagtacaaaatgttgtcaaat 11257786  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 18875640 - 18875594
Alignment:
Q  3 gatgatggttatcgctggcgaaagtatggacagaaggttgtcaaagg 49  Q
    |||||||||||| | |||||||| ||||||||||| |||||||||||    
T  18875640 gatgatggttatagatggcgaaaatatggacagaaagttgtcaaagg 18875594  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 41015065 - 41015013
Alignment:
Q  131 aaatttgaacaaattgctattgtt-tgtgatatgctaattagtacaaaatgtt 182  Q
    ||||||||||||| ||||||||||  ||||||||||| |||||||||| ||||    
T  41015065 aaatttgaacaaactgctattgttccgtgatatgctatttagtacaaagtgtt 41015013  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 8282910 - 8282852
Alignment:
Q  132 aatttgaacaaattgctattgt-ttgtgatatgctaattagtacaaaatgttttcaaat 189  Q
    ||||||||||||| |||||||| ||||||||||| | ||| ||||||||||| ||||||    
T  8282910 aatttgaacaaatagctattgtcttgtgatatgcgatttattacaaaatgttctcaaat 8282852  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 13851067 - 13851011
Alignment:
Q  132 aatttgaacaaattgctattgtttgtgatatgctaattagtacaaaatgttttcaaat 189  Q
    ||||||| ||| |||||||| |||||||||| ||| ||||||||||||||| ||||||    
T  13851067 aatttgagcaagttgctatt-tttgtgatatactatttagtacaaaatgttatcaaat 13851011  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 13869891 - 13869848
Alignment:
Q  144 ttgctattgtttgtgatatgctaattagtacaaaatgttttcaaa 188  Q
    |||||||| |||||||||||||| ||||||||||||||| |||||    
T  13869891 ttgctatt-tttgtgatatgctatttagtacaaaatgttgtcaaa 13869848  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 18737689 - 18737733
Alignment:
Q  129 cgaaatttgaacaaattgctattgttt-gtgatatgctaattagt 172  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||    
T  18737689 cgaaatttgaacaaattgctattgtttcgggatatgctatttagt 18737733  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 41631944 - 41631902
Alignment:
Q  133 atttgaacaaattgctattg-tttgtgatatgctaattagtac 174  Q
    |||||||||||||||||||| |||||||||||||| |||||||    
T  41631944 atttgaacaaattgctattgttttgtgatatgctatttagtac 41631902  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 16733777 - 16733713
Alignment:
Q  126 tagcgaaatttgaacaaattgctattgtt-tgtgatatgctaattagtacaaaatgttttcaaat 189  Q
    |||||||||||||| |||||||||||||| || |||  |||| |||||||| | |||||||||||    
T  16733777 tagcgaaatttgaataaattgctattgttctgcgattcgctatttagtacacagtgttttcaaat 16733713  T

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Target: scaffold0491 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 4388 - 4432
Alignment:
Q  129 cgaaatttgaacaaattgctattgttt-gtgatatgctaattagt 172  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||    
T  4388 cgaaatttgaacaaattgctattgtttcgggatatgctatttagt 4432  T

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