View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11610_low_15 (Length: 226)
Name: NF11610_low_15
Description: NF11610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11610_low_15 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0781 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 2215811 - 2215586
Alignment:
| Q |
1 |
ctactcgggagattcaattgttcctatcaagaggtagaatccgatgggcgtggacaacagatatgcacacatgtgtgcatgcgtgcgtacatccatgtgc |
100 |
Q |
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| T |
2215811 |
ctactcgggagattcaattcttcctatcaagaggtagaatccgatgggcgtggacaacagatatgcacacatgtgtgcatgcgtgcgtacatccatgtgc |
2215712 |
T |
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| Q |
101 |
gtgttgtgtccttctattcttttacgaatattttcatagtgtattataattttgaaaattgaatattttcaacaacaatgggcgcatatcacacaacgat |
200 |
Q |
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| T |
2215711 |
gtgttgtgtccttctattcttttacgaatattttcatagtgtattataattttgaaaattgaatattttcaataacaatgggcgcatatcacacaacgat |
2215612 |
T |
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| Q |
201 |
gccgtttcattacctcctattacgac |
226 |
Q |
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| T |
2215611 |
gccgtttcattacctcctgttacgac |
2215586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 2217070 - 2216980
Alignment:
| Q |
64 |
tgcacacatgtgtgcatgcgtgcgtacatccatgtgcgtgttgtgtccttctattcttttacgaatattttcatagtgtattataattttg |
154 |
Q |
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| T |
2217070 |
tgcacacatgcgtgcttgtgtgcgtgcgtcaatgtgagtgttgtgtccttgtattcttttacaaataattttatagtatattacaattttg |
2216980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold0781
Description:
Target: scaffold0781; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 4268 - 4043
Alignment:
| Q |
1 |
ctactcgggagattcaattgttcctatcaagaggtagaatccgatgggcgtggacaacagatatgcacacatgtgtgcatgcgtgcgtacatccatgtgc |
100 |
Q |
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| T |
4268 |
ctactcgggagattcaattcttcctatcaagaggtagaatccgatgggcgtggacaacagatatgcaaaaatgtgtgcatgcgtgcgtacatccatgtgc |
4169 |
T |
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| Q |
101 |
gtgttgtgtccttctattcttttacgaatattttcatagtgtattataattttgaaaattgaatattttcaacaacaatgggcgcatatcacacaacgat |
200 |
Q |
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| T |
4168 |
gtgttgtgtccttttatttttttacgaatattttcatagtgtattataattttgaaaattgaatattttcaataacaatgggcgcatatcacacaacgat |
4069 |
T |
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| Q |
201 |
gccgtttcattacctcctattacgac |
226 |
Q |
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| T |
4068 |
gccgtttcattacctcctgttacgac |
4043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 5526 - 5437
Alignment:
| Q |
64 |
tgcacacatgtgtgcatgcgtgcgtacatccatgtgcgtgttgtgtccttctattcttttacgaatattttcatagtgtattataattttg |
154 |
Q |
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| T |
5526 |
tgcacacatgcgtgcttgtgtgcgtgcgttcatgtgagtgttgtgtccttgtattcttttac-aataattttatagtatattacaattttg |
5437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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