View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11610_low_17 (Length: 214)

Name: NF11610_low_17
Description: NF11610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11610_low_17
NF11610_low_17
[»] chr3 (1 HSPs)
chr3 (20-162)||(1727480-1727622)
[»] chr1 (1 HSPs)
chr1 (65-162)||(27518805-27518902)
[»] chr7 (2 HSPs)
chr7 (162-193)||(13877045-13877076)
chr7 (86-144)||(27289231-27289289)
[»] chr4 (2 HSPs)
chr4 (162-193)||(15867203-15867234)
chr4 (85-132)||(39042706-39042753)
[»] chr6 (1 HSPs)
chr6 (85-134)||(12349486-12349535)


Alignment Details
Target: chr3 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 1727480 - 1727622
Alignment:
Q  20 atatgtgtacctaagtctgaaattttctatgctacagaaacactttatgggagaaccaacgcttcagtcatggtacttgaacagtggttactcatgacac 119  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  1727480 atatgtgtacctaagtctgaaattttatatgctacagaaacactttatgggagaaccaacgcttcagtcatggtacctggacagtggttactcatgacac 1727579  T
Q  120 atgacaagagaaaagcatattttccaaacattaacactgaaag 162  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  1727580 atgacaagagaaaagcacattttccaaacattaacactgaaag 1727622  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 27518805 - 27518902
Alignment:
Q  65 tatgggagaaccaacgcttcagtcatggtacttgaacagtggttactcatgacacatgacaagagaaaagcatattttccaaacattaacactgaaag 162  Q
    |||||||||| ||| | | |||||||||||| |||||||| ||| |||  || ||||||||| |||||||||||| ||||||||  ||||| ||||||    
T  27518805 tatgggagaatcaaagttccagtcatggtacctgaacagtagttgctcccgatacatgacaatagaaaagcatatgttccaaaccctaacattgaaag 27518902  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 193
Target Start/End: Complemental strand, 13877076 - 13877045
Alignment:
Q  162 ggcaagattattggtacatgaactattggtaa 193  Q
    ||||||||||||||||||||||||||||||||    
T  13877076 ggcaagattattggtacatgaactattggtaa 13877045  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 27289231 - 27289289
Alignment:
Q  86 gtcatggtacttgaacagtggttactcatgacacatgacaagagaaaagcatattttcc 144  Q
    ||||||||||||| ||||||||| ||| || ||||||||| ||||||||| ||| ||||    
T  27289231 gtcatggtacttggacagtggttgctcgtgtcacatgacaggagaaaagcctatgttcc 27289289  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 193
Target Start/End: Original strand, 15867203 - 15867234
Alignment:
Q  162 ggcaagattattggtacatgaactattggtaa 193  Q
    ||||||||||||||||||||||||||||||||    
T  15867203 ggcaagattattggtacatgaactattggtaa 15867234  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 39042753 - 39042706
Alignment:
Q  85 agtcatggtacttgaacagtggttactcatgacacatgacaagagaaa 132  Q
    ||||||||||| || ||||||||| |||| ||||||||||||||||||    
T  39042753 agtcatggtacctggacagtggttgctcacgacacatgacaagagaaa 39042706  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 12349535 - 12349486
Alignment:
Q  85 agtcatggtacttgaacagtggttactcatgacacatgacaagagaaaag 134  Q
    ||||||||||| || ||||||||| |||| ||||||||||| ||||||||    
T  12349535 agtcatggtacctgtacagtggttgctcacgacacatgacaggagaaaag 12349486  T

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