View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11610_low_8 (Length: 271)
Name: NF11610_low_8
Description: NF11610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11610_low_8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 30408094 - 30407824
Alignment:
| Q |
1 |
aagctagtaggcatataacattttcttgtccatctcttctaggagctactacaaatgcacaagtgctggatgtaccgtaaggaaacatgtggaaagggct |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30408094 |
aagccagtaggcatataacattttcttgtccatctcttctaggagctactacaaatgcacaagtgctggatgtactgtaaggaaacatgtggaaagggct |
30407995 |
T |
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| Q |
101 |
tcacacaatctaaagtatgttcttacaacttatgagggaaaacataaccacgaggttcccgctgctagaaataacaatcatataagctcaagtgatgttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30407994 |
tcacacaatctaaagtatgttcttacaacttatgagggaaaacataaccacgaggttcccgctgctagaaataacaatcatataagctcaagtgatgttg |
30407895 |
T |
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| Q |
201 |
gtttatcttctacttgtgctaatgtcatacctgggagtgccgttatcccgaaatctgaaactcatcaaact |
271 |
Q |
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| T |
30407894 |
gtttatcttctacttgtgctaatgtcatacctgggagtgccgttatcccaaaatctgaaactcatcaaact |
30407824 |
T |
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Target: chr7; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 30394476 - 30394283
Alignment:
| Q |
1 |
aagctagtaggcatataacattttcttgtccatctcttctaggagctactacaaatgcacaagtgctggatgtaccgtaaggaaacatgtggaaagggct |
100 |
Q |
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||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30394476 |
aagctagtatgcgtataacatttttttgtccatctcttctaggagctactacaaatgcacaagtgctggatgtaccgtaaggaaacatgtggaaagggct |
30394377 |
T |
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| Q |
101 |
tcacacaatctaaagtatgttcttacaacttatgagggaaaacataaccacgaggttcccgctgctagaaataacaatcatataagctcaagtg |
194 |
Q |
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| T |
30394376 |
tcacacaatattaagtatgttcttacaacttatgagggaaagcataatcacgaggttcctgctgctagaaataacaatcattcaagctcaagtg |
30394283 |
T |
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