View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11611_high_2 (Length: 437)
Name: NF11611_high_2
Description: NF11611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11611_high_2 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 12 - 418
Target Start/End: Complemental strand, 12530691 - 12530285
Alignment:
| Q |
12 |
agagaaggggatggaatagaacaatgcatgtgaagatcatagtcacaaatgttgcagctgtaacgcgaacctatgccaatttctttgcagccgtcacatt |
111 |
Q |
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| T |
12530691 |
agagaaggggatggaatagaacaatgcatgtgaagatcatagtcacaaatgttgcagctgtaacgcgaacctatgccaatttctttgcagccatcacatt |
12530592 |
T |
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| Q |
112 |
tgaatggaaattcggagtattgaaatgttagtttatgttttggatggctaaaatgagatatctcattgtatctttttgtggtgttcatggttgtgtcttt |
211 |
Q |
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| T |
12530591 |
tgaatggaaactcggagtgttgaaatgttagtttatgtttttgatggctaaaatgagatatctcattgtatctttttgtggtgttcatggttgtgtcttt |
12530492 |
T |
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| Q |
212 |
atgattagaaaatttggctatggaatacattattttggannnnnnnnngttgcttacaagaatggatagtatatttggatgtgggaggatagaaaagcta |
311 |
Q |
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| T |
12530491 |
atgattagaaaatttggctatggaatacattattttggatttttttttgttgcttacaagaatggatagtatatttggatgtgggaggatagaaaagcta |
12530392 |
T |
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| Q |
312 |
tatgaattatatatgatgagggtgaatcaaatttagcttatggttcaagcaattgtaaaggaaaaatagttcatgggaatctccacgtatataacagaaa |
411 |
Q |
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| T |
12530391 |
tatgaattatatatgatgagggtgaatcaaatttagcttatggttcaagcaattgtaaaggaaaaatagttcatgggaatctccacgtatataacagaaa |
12530292 |
T |
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| Q |
412 |
agcacaa |
418 |
Q |
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| T |
12530291 |
agcacaa |
12530285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 40 - 182
Target Start/End: Complemental strand, 25802181 - 25802039
Alignment:
| Q |
40 |
tgtgaagatcatagtcacaaatgttgcagctgtaacgcgaacctatgccaatttctttgcagccgtcacatttgaatggaaattcggagtattgaaatgt |
139 |
Q |
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| T |
25802181 |
tgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatct |
25802082 |
T |
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| Q |
140 |
tagtttatgttttggatggctaaaatgagatatctcattgtat |
182 |
Q |
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| T |
25802081 |
tagtttgtgttttgggtggctgaaatgggatatctcactgtat |
25802039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 40 - 182
Target Start/End: Complemental strand, 25816274 - 25816132
Alignment:
| Q |
40 |
tgtgaagatcatagtcacaaatgttgcagctgtaacgcgaacctatgccaatttctttgcagccgtcacatttgaatggaaattcggagtattgaaatgt |
139 |
Q |
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||||||| |||| |||||||||| |||| ||||||| ||||||||||| | ||| ||||| ||||| |||||||||||||||||| || || ||| | |
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| T |
25816274 |
tgtgaaggtcattgtcacaaatgctgcatttgtaacgtgaacctatgcctacttcgttgcaaccgtcgcatttgaatggaaattcgttgtgttcgaatct |
25816175 |
T |
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| Q |
140 |
tagtttatgttttggatggctaaaatgagatatctcattgtat |
182 |
Q |
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| T |
25816174 |
tagtttgtgttttgggtggctgaaatgtgatatctcgttgtat |
25816132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 112394 - 112492
Alignment:
| Q |
84 |
atgccaatttctttgcagccgtcacatttgaatggaaattcggagtattgaaatgttagtttatgttttggatggctaaaatgagatatctcattgtat |
182 |
Q |
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| T |
112394 |
atgcctatttctttgcagccatcgcatttgaatggaaattcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgtgatatctcactgtat |
112492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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