View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11611_low_1 (Length: 509)

Name: NF11611_low_1
Description: NF11611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11611_low_1
NF11611_low_1
[»] chr6 (10 HSPs)
chr6 (29-496)||(1891220-1891700)
chr6 (29-154)||(1906285-1906410)
chr6 (40-154)||(1896613-1896727)
chr6 (29-154)||(1912110-1912235)
chr6 (29-129)||(1884534-1884634)
chr6 (29-181)||(1878531-1878684)
chr6 (313-434)||(24985949-24986071)
chr6 (309-426)||(24985949-24986067)
chr6 (310-429)||(1891287-1891406)
chr6 (28-148)||(1917185-1917305)
[»] chr3 (3 HSPs)
chr3 (309-432)||(42896153-42896277)
chr3 (310-429)||(42896156-42896276)
chr3 (324-413)||(29290808-29290897)
[»] chr2 (2 HSPs)
chr2 (309-387)||(45650993-45651072)
chr2 (309-434)||(45650989-45651115)
[»] chr4 (2 HSPs)
chr4 (309-434)||(11045652-11045778)
chr4 (309-434)||(11047500-11047626)


Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 29 - 496
Target Start/End: Complemental strand, 1891700 - 1891220
Alignment:
Q  29 aaacatgaaaatgacagctagaatgaaagtgaaagcaggtaccagattaccaattgctgaagcaagtgttggagaactgtagttaataccaatatacccc 128  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1891700 aaacctgaaaatgacagctagaatgaaagtgaaagcaggtaccagattaccaattgctgaagcaagtgttggagaactgtagttaataccaatatacccc 1891601  T
Q  129 aaaatctgagctgaacatctgcataatatgaacacaaaccatcataagcataatat----taaagagaccaatttcaccaaaactaactaaccgtgaaga 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||| |||    
T  1891600 aaaatctgagctgaacatctgcataatatgaacacaaaccatcataagcataatattaaataaagagaccaatttcaccaaaactaactaaccgtggaga 1891501  T
Q  225 aatagaccttggtaatacggagtttgattaggag---------gtaaacaatcactatttcatccagagactaaattactactacatctgtgtcttatta 315  Q
    ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  1891500 aatagaccttggtaatacggagtttgattaggaggtaaattttgtaaacaatcactatttcatccggagacaaaattactactacatctgtttcttatta 1891401  T
Q  316 taagagacaattcacttttcagttcactgagtaactgatgtatctgatctaccatatagaccagatacatcagttgctcaatgaacctagaaagtgaact 415  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1891400 taagagacaattcacttttcggttcactgagtaactgatgtatctgatctatcatatagaccagatacatcagttactcaatgaacctagaaagtgaact 1891301  T
Q  416 gtctcctataataaagaacgaggcagtagtatactaaaagacacattaacaataattggagtaaaggataagaccattttg 496  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1891300 gtctcctataataaagaacgaggtagtagtatactaaaagacacattaacaataattggagtaaaggataagatcattttg 1891220  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 1906410 - 1906285
Alignment:
Q  29 aaacatgaaaatgacagctagaatgaaagtgaaagcaggtaccagattaccaattgctgaagcaagtgttggagaactgtagttaataccaatatacccc 128  Q
    |||| ||||| | |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||     
T  1906410 aaacctgaaagtaacagctagcatgaaagtgaaagcaggtaccagattagcaattgctgaagcaagtgttggagaactgtagttaatactcatataccca 1906311  T
Q  129 aaaatctgagctgaacatctgcataa 154  Q
    | |||||||| |||||| ||||||||    
T  1906310 agaatctgagatgaacacctgcataa 1906285  T

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Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 1896727 - 1896613
Alignment:
Q  40 tgacagctagaatgaaagtgaaagcaggtaccagattaccaattgctgaagcaagtgttggagaactgtagttaataccaatataccccaaaatctgagc 139  Q
    |||||||||| |||||||||||||||||||  |||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| || |||||     
T  1896727 tgacagctagcatgaaagtgaaagcaggtattagattagcaagtgctgaagcaagtgttggagaactgtaattaataccaatataccccagaacctgaga 1896628  T
Q  140 tgaacatctgcataa 154  Q
    |||||||||||||||    
T  1896627 tgaacatctgcataa 1896613  T

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Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 1912235 - 1912110
Alignment:
Q  29 aaacatgaaaatgacagctagaatgaaagtgaaagcaggtaccagattaccaattgctgaagcaagtgttggagaactgtagttaataccaatatacccc 128  Q
    |||| ||||| | |||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||  | ||||||| ||||||||||    
T  1912235 aaacctgaaagtaacagctagcatgaaagtgaaagcaggtaccagattggcaattgctgaagcaagtgttggagaacttgaattaatactaatatacccc 1912136  T
Q  129 aaaatctgagctgaacatctgcataa 154  Q
    | |||||||| ||||||||| |||||    
T  1912135 agaatctgagatgaacatctacataa 1912110  T

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Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 1884634 - 1884534
Alignment:
Q  29 aaacatgaaaatgacagctagaatgaaagtgaaagcaggtaccagattaccaattgctgaagcaagtgttggagaactgtagttaataccaatatacccc 128  Q
    |||| ||||||| |||||||  |||||||||||||||||||| |||||||||||||||| || |||||||||||||||||| |||||| |||||||||||    
T  1884634 aaacctgaaaataacagctaacatgaaagtgaaagcaggtacaagattaccaattgctgcagaaagtgttggagaactgtaattaatagcaatatacccc 1884535  T
Q  129 a 129  Q
    |    
T  1884534 a 1884534  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 29 - 181
Target Start/End: Complemental strand, 1878684 - 1878531
Alignment:
Q  29 aaacatgaaaatgacagctagaatgaaagtgaaagcaggtaccagattaccaattgctgaagcaagtgttggagaactgtagttaataccaatatacccc 128  Q
    |||| ||||| |||||||||  |||||||||||||||||||  ||||||||||||| || || ||||||||||||||||||  ||||| || | ||||||    
T  1878684 aaacctgaaagtgacagctaagatgaaagtgaaagcaggtatgagattaccaattgatgcagaaagtgttggagaactgtaactaatagcagtgtacccc 1878585  T
Q  129 aaaatctgagctgaacatctgcataatatg-aacacaaaccatcataagcataa 181  Q
    | ||| |||  |||| ||||| |||| ||| |||||||||||||| || |||||    
T  1878584 ataatttgacatgaagatctgtataacatgaaacacaaaccatcagaaccataa 1878531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 434
Target Start/End: Original strand, 24985949 - 24986071
Alignment:
Q  313 ttataagagacaattcacttttcag-ttcactgagtaactgatgtatctgatctaccatatagaccagatacatcagttgctcaatgaacctagaaagtg 411  Q
    ||||| ||||||||||| |||| || |||| ||| |||||||||||| |||||||   ||||||||| |||||||| ||   ||||||||||| ||||||    
T  24985949 ttataggagacaattcatttttgaggttcattgaataactgatgtatttgatctatattatagaccatatacatcaattatccaatgaacctaaaaagtg 24986048  T
Q  412 aactgtctcctataataaagaac 434  Q
    || |||||| |||||||| ||||    
T  24986049 aattgtctcttataataaggaac 24986071  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 426
Target Start/End: Complemental strand, 24986067 - 24985949
Alignment:
Q  309 cttattataagagacaattcacttttcag-ttcactgagtaactgatgtatctgatctaccatatagaccagatacatcagttgctcaatgaacctagaa 407  Q
    |||||||||||||||||||||||||| || |||| ||  ||| |||||||| || ||||  ||||||| || |||||||||||  |||||||||||  ||    
T  24986067 cttattataagagacaattcactttttaggttcattggataattgatgtatatggtctataatatagatcaaatacatcagttattcaatgaacctcaaa 24985968  T
Q  408 agtgaactgtctcctataa 426  Q
    | |||| ||||||||||||    
T  24985967 aatgaattgtctcctataa 24985949  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 310 - 429
Target Start/End: Original strand, 1891287 - 1891406
Alignment:
Q  310 ttattataagagacaattcacttttcag-ttcactgagtaactgatgtatctgatctaccatatagaccagatacatcagttgctcaatgaacctagaaa 408  Q
    |||||||| |||||| ||||||||  || |||| ||||||||||||||||||| ||||    ||||| |||||||||||||| |||| |||||| | |||    
T  1891287 ttattataggagacagttcactttctaggttcattgagtaactgatgtatctggtctatatgatagatcagatacatcagttactcagtgaaccga-aaa 1891385  T
Q  409 gtgaactgtctcctataataa 429  Q
    ||||| |||||| ||||||||    
T  1891386 gtgaattgtctcttataataa 1891406  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 1917305 - 1917185
Alignment:
Q  28 gaaacatgaaaatgacagctagaatgaaagtgaaagcaggtaccagattaccaattgctgaagcaagtgttggagaactgtagttaataccaatataccc 127  Q
    ||||| || ||||||||||||  ||||| || |||||||| |  || || |||||||| || | |||||| |||||||||||  | || |||  ||||||    
T  1917305 gaaacctgcaaatgacagctaacatgaaggtaaaagcaggaatgaggtttccaattgcagaggaaagtgtaggagaactgtaactgatgccagcataccc 1917206  T
Q  128 caaaatctgagctgaacatct 148  Q
    |||||||||||  ||||||||    
T  1917205 caaaatctgagaagaacatct 1917185  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 432
Target Start/End: Complemental strand, 42896277 - 42896153
Alignment:
Q  309 cttattataagagacaattcacttttca-gttcactgagtaactgatgtatctgatctaccatatagaccagatacatcagttgctcaatgaacctagaa 407  Q
    |||||||||||| ||||||||||||| | ||||| ||| |||||||||||| || ||     |||||||||||||||||||||  |||||||||||| ||    
T  42896277 cttattataagaaacaattcactttttacgttcattgaataactgatgtatatggtccttattatagaccagatacatcagttattcaatgaacctaaaa 42896178  T
Q  408 agtgaactgtctcctataataaaga 432  Q
    |||||| ||  || |||||||||||    
T  42896177 agtgaattgcttcttataataaaga 42896153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 310 - 429
Target Start/End: Original strand, 42896156 - 42896276
Alignment:
Q  310 ttattataagagacaattcacttttcag-ttcactgagtaactgatgtatctgatctaccatatagaccagatacatcagttgctcaatgaacctagaaa 408  Q
    |||||||||||  |||||||||||| || |||| ||| ||||||||||||||| ||||  |||  ||||| |||||||||||  ||||||||| || |||    
T  42896156 ttattataagaagcaattcactttttaggttcattgaataactgatgtatctggtctataataaggaccatatacatcagttattcaatgaacgtaaaaa 42896255  T
Q  409 gtgaactgtctcctataataa 429  Q
    ||||| ||| || ||||||||    
T  42896256 gtgaattgtttcttataataa 42896276  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 413
Target Start/End: Complemental strand, 29290897 - 29290808
Alignment:
Q  324 aattcacttttcagttcactgagtaactgatgtatctgatctaccatatagaccagatacatcagttgctcaatgaacctagaaagtgaa 413  Q
    ||||||||||| | |||| ||| ||||| |||||| |  ||||  ||||||| ||||||||||||||| |||||||| ||| ||||||||    
T  29290897 aattcactttttaattcattgaataacttatgtatttagtctataatatagatcagatacatcagttgttcaatgaatctaaaaagtgaa 29290808  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 387
Target Start/End: Original strand, 45650993 - 45651072
Alignment:
Q  309 cttattataagagacaattcacttttcag-ttcactgagtaactgatgtatctgatctaccatatagaccagatacatca 387  Q
    ||||||||||||||||||| |||||| || || | ||| ||||||||| ||||| ||||  |||||||||||||||||||    
T  45650993 cttattataagagacaattaactttttaggtttattgaataactgatgaatctgttctataatatagaccagatacatca 45651072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 434
Target Start/End: Complemental strand, 45651115 - 45650989
Alignment:
Q  309 cttattataagagacaattcacttttcag-ttcactgagtaactgatgtatctgatctaccatatagaccagatacatcagttgctcaatgaacctagaa 407  Q
    |||| |||||||||||||||| || | || |||  ||| ||| ||||||||||| ||||   |||||| ||||| ||||||||  ||||| |||||| ||    
T  45651115 cttactataagagacaattcatttattagattctttgaataattgatgtatctggtctatattatagaacagattcatcagttattcaataaacctaaaa 45651016  T
Q  408 agtgaactgtctcctataataaagaac 434  Q
    ||| || |||||| |||||||| ||||    
T  45651015 agttaattgtctcttataataaggaac 45650989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 434
Target Start/End: Complemental strand, 11045778 - 11045652
Alignment:
Q  309 cttattataagagacaattcacttttcag-ttcactgagtaactgatgtatctgatctaccatatagaccagatacatcagttgctcaatgaacctagaa 407  Q
    ||||||||| ||||||||  | |||| || |||| ||| |||||| ||| | || ||||  |||||||| | ||| || ||||  |||||||||||| ||    
T  11045778 cttattataggagacaatataatttttaggttcattgaataactggtgtgtgtggtctataatatagactaaatatattagttattcaatgaacctaaaa 11045679  T
Q  408 agtgaactgtctcctataataaagaac 434  Q
    |||||| |||||| |||||||||||||    
T  11045678 agtgaattgtctcatataataaagaac 11045652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 434
Target Start/End: Complemental strand, 11047626 - 11047500
Alignment:
Q  309 cttattataagagacaattcacttttcag-ttcactgagtaactgatgtatctgatctaccatatagaccagatacatcagttgctcaatgaacctagaa 407  Q
    ||||||||| ||||||||  | |||| || |||| ||| |||||| ||| | || ||||  |||||||| | ||| || ||||  |||||||||||| ||    
T  11047626 cttattataggagacaatataatttttaggttcattgaataactggtgtgtgtggtctataatatagactaaatatattagttattcaatgaacctaaaa 11047527  T
Q  408 agtgaactgtctcctataataaagaac 434  Q
    |||||| |||||| |||||||||||||    
T  11047526 agtgaattgtctcatataataaagaac 11047500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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