View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11612_low_1 (Length: 792)
Name: NF11612_low_1
Description: NF11612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11612_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 489; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 558
Target Start/End: Original strand, 31670440 - 31670988
Alignment:
| Q |
19 |
atagttgagttttaagaggccagaaatataattatttagtaattgatgtgaaaatttgaaggctagtcggggaagatgctcccaatgacgtctacccaaa |
118 |
Q |
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| T |
31670440 |
atagttgagttttaagaggccagaaatataattatttagtaattgatgtgaaaatttgaaggctagtcggggaagatgctcccaataacgtctacccaaa |
31670539 |
T |
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| Q |
119 |
tttgtgtgtggctctacagactgatacaaggttaataaaattttaatcattcattatttagtaaatattttgatgagtttcattttgataaagtattgtc |
218 |
Q |
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| T |
31670540 |
tttgtgtgtggctctaccaactgatacaaggttaataaaattttaatcattcattatttagtaaatattttgatgagtttcattttgataaagtattgtc |
31670639 |
T |
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| Q |
219 |
ttactttataagtaattatttatagttaatgtcaaatgttttgtatgatctaactgttattactgtttggtgtgtagaatatttaaaacatttttacatg |
318 |
Q |
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| T |
31670640 |
ttactttataagtaattatttatagttaatgtcaaatgttttgtatgatctaactgttatgactgtttggtgtgtagaatatttaaaacatttttacatg |
31670739 |
T |
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| Q |
319 |
gattaattaagtaaatcatttctttgttgatattgcttaaaaaagaattaagatagttcctataagaattagaaagcatcaaccttacttattttcgtgt |
418 |
Q |
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| T |
31670740 |
gattaattaagtaaatcatttctttgttgatattgcttaaaaaagaattaagatagttcctataagaattagaaagcatcaaccttacttattttcgtgt |
31670839 |
T |
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| Q |
419 |
taaagctcaaattgttgagatctaaaacacaagtaatatcacac---------atgaagttagaatgtaattcaaaacatgagacaaagaaattgagtaa |
509 |
Q |
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| T |
31670840 |
taaagctcaaattgttgagatctaaaacacaagtaatatcacacaagaatttaatgaagttcgaatgtaattccaaacatgagacaaagaaattgagtaa |
31670939 |
T |
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| Q |
510 |
aagagttttagaaatattttttgtttctatagtgttgatatcttgtgag |
558 |
Q |
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| T |
31670940 |
aagagttttagaaatattttttgtttctacagtgttgatatcttgtgag |
31670988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 727 - 787
Target Start/End: Original strand, 31671199 - 31671259
Alignment:
| Q |
727 |
cacatcaaagtctcgactcactttccctatgttagttctttctattgtttttcttctctct |
787 |
Q |
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| T |
31671199 |
cacatcaaagtctcgactcactttccctatgttagttctttctattatttttcttcgctct |
31671259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 330 - 455
Target Start/End: Original strand, 29130759 - 29130880
Alignment:
| Q |
330 |
taaatcatttctttgttgatattgcttaaaaaagaattaagatagttcctataagaattagaaagcatcaaccttacttattttcgtgttaaagctcaaa |
429 |
Q |
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| T |
29130759 |
taaatcatttctttgttgcaattgcttaaaata-aattaagatagtttctatataaatgacaaa-cgtcaaccttaattattt--gtattaaaactcaaa |
29130854 |
T |
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| Q |
430 |
ttgttgagatctaaaacacaagtaat |
455 |
Q |
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| T |
29130855 |
ctgttgagacttaaaacacaagtaat |
29130880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 377
Target Start/End: Original strand, 29120986 - 29121037
Alignment:
| Q |
326 |
taagtaaatcatttctttgttgatattgcttaaaaaagaattaagatagttc |
377 |
Q |
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| T |
29120986 |
taagtaaatcatttctctgttactattgcttaaaaatgaattaagaaagttc |
29121037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 476 - 551
Target Start/End: Original strand, 29126334 - 29126408
Alignment:
| Q |
476 |
gtaattcaaaacatgagacaaagaaattgagtaaaagagttttagaaatattttttgtttctatagtgttgatatc |
551 |
Q |
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| T |
29126334 |
gtaatttaaaacacgaaacaaaaatattgagtaaaa-atatttagaaatatttgttgtttctagagtgttgatatc |
29126408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 332764 - 332828
Alignment:
| Q |
21 |
agttgagttttaagaggccagaaatataattatttagtaattgatgtgaaaatttgaaggctagt |
85 |
Q |
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| T |
332764 |
agttgagttttaagaggctagaaatataattatttactcattgatgaaaaaagttgaaggttagt |
332828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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