View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11612_low_11 (Length: 288)
Name: NF11612_low_11
Description: NF11612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11612_low_11 |
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| [»] scaffold0112 (3 HSPs) |
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| [»] scaffold0416 (1 HSPs) |
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| [»] scaffold0759 (1 HSPs) |
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| [»] scaffold0093 (1 HSPs) |
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Alignment Details
Target: scaffold0112 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 24 - 280
Target Start/End: Complemental strand, 25917 - 25658
Alignment:
| Q |
24 |
tccatgcggcaactccataacgtgtcgttgtgtccatttggat---tttggaatgacctgcattgatacgggcgctggcctctaactctaatgaaaagga |
120 |
Q |
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|||||||||||||||||||||||||| |||||| |||| | ||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
25917 |
tccatgcggcaactccataacgtgtcaatgtgtcagtttgcaaatatttggaatgacctgcattggagtaccagatggcctctaactctaatgaaaagga |
25818 |
T |
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| Q |
121 |
gtacttgaagatggctttggatattgccacttaagaatgatattgccaccaaaaccgtaaacatggatatctaaccgtttccggaccatatggttttaaa |
220 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
25817 |
gtacttgaagatggctttggatattgctacttaagaatgatattgccgccaaaaccgtaaacatggatatctagccgtttccggaccatatgattttaaa |
25718 |
T |
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| Q |
221 |
tgatatgttacttctccctctcttttttgtgagccttcagctaaaaccccaatttcttct |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25717 |
tgatatgttacttctccctctcttttttgtgagccttcagctaaaaccccaatttcttct |
25658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 40897 - 40835
Alignment:
| Q |
96 |
tggcctctaactctaatgaaaaggagtacttgaagatggctttggatattgccacttaagaat |
158 |
Q |
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| T |
40897 |
tggcctctaactctaatgaaaaagactacttgaagatggctttggaaattgccacttaagaat |
40835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 41060 - 40943
Alignment:
| Q |
24 |
tccatgcggcaactccataacgtgtcgttgtgtccatttggattt---tggaatgacctgcattga---tacgggcgctggcctctaactctaatgaaaa |
117 |
Q |
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|||||||||| || || |||||||||||||||| ||||| |||| ||||| |||||| |||| || ||| | |||||||||| |||||||||| |
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| T |
41060 |
tccatgcggcgacatcacaacgtgtcgttgtgtctatttgcatttagttggaagtacctgcgttgactataggggtgatggcctctaattctaatgaaat |
40961 |
T |
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| Q |
118 |
ggagtacttgaagatggc |
135 |
Q |
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|||||||||||||||||| |
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| T |
40960 |
ggagtacttgaagatggc |
40943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 7434 - 7294
Alignment:
| Q |
24 |
tccatgcggcaactccataacgtgtcgttgtgtccatttggattt---tggaatgacctgcattga---tacgggcgctggcctctaactctaatgaaaa |
117 |
Q |
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|||||||||| || | ||||||||||||||||||||||| |||| ||||| ||||||||||| |||||| | |||||||||||||||||||||| |
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| T |
7434 |
tccatgcggcgacatcgtaacgtgtcgttgtgtccatttgcatttagttggaagtacctgcattgactatacgggtgatggcctctaactctaatgaaaa |
7335 |
T |
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| Q |
118 |
ggagtacttgaagatggctttggatattgccacttaagaat |
158 |
Q |
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|| |||||||||||||||||||| |||||||||||||||| |
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| T |
7334 |
agactacttgaagatggctttggaaattgccacttaagaat |
7294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 26792194 - 26792334
Alignment:
| Q |
24 |
tccatgcggcaactccataacgtgtcgttgtgtccatttggat---tttggaatgacctgcattga---tacgggcgctggcctctaactctaatgaaaa |
117 |
Q |
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|||||||||||| ||||||||||||| |||||| |||| | ||||||||| |||||||||| |||||| | |||||||||||||||||||||| |
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| T |
26792194 |
tccatgcggcaattccataacgtgtcagtgtgtcagtttgtacatatttggaatgtcctgcattgactatacgggtgatggcctctaactctaatgaaaa |
26792293 |
T |
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| Q |
118 |
ggagtacttgaagatggctttggatattgccacttaagaat |
158 |
Q |
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| T |
26792294 |
aaactacttgaagatggctttggaaattgccacttaagaat |
26792334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 26834867 - 26834917
Alignment:
| Q |
112 |
tgaaaaggagtacttgaagatggctttggatattgccacttaagaatgata |
162 |
Q |
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|||||| || || |||| |||||||||||| |||||||||||||||||||| |
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| T |
26834867 |
tgaaaatgactaattgaggatggctttggaaattgccacttaagaatgata |
26834917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 26745798 - 26745854
Alignment:
| Q |
105 |
actctaatgaaaaggagtacttgaagatggctttggatattgccacttaagaatgat |
161 |
Q |
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| T |
26745798 |
actctattgaaaaagactacttgaagacgactttggaaattgccacttaaaaatgat |
26745854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0759 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0759
Description:
Target: scaffold0759; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 2407 - 2501
Alignment:
| Q |
67 |
tttggaatgacctgcattga---tacgggcgctggcctctaactctaatgaaaaggagtacttgaagatggctttggatattgccacttaagaat |
158 |
Q |
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|||||||||| ||||||||| |||||| | |||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||| |
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| T |
2407 |
tttggaatgatctgcattgactatacgggtgatggcctctaactctaatgaaaaaaactacttgaagatggctttggaaattgccacttaagaat |
2501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 12110383 - 12110448
Alignment:
| Q |
98 |
gcctctaactctaatgaaaaggagtacttgaagatggctttggatattgccacttaagaatgatat |
163 |
Q |
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| T |
12110383 |
gcctctaaatctaaagaacaagactaccttaagatggctttggaaattgccacttaagaatgatat |
12110448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 12124071 - 12124136
Alignment:
| Q |
98 |
gcctctaactctaatgaaaaggagtacttgaagatggctttggatattgccacttaagaatgatat |
163 |
Q |
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||||||||||| || ||||| | ||| | |||||||||||||| ||||||||||||||||||||| |
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| T |
12124071 |
gcctctaactccaaagaaaaaggctaccttaagatggctttggaaattgccacttaagaatgatat |
12124136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 12128218 - 12128283
Alignment:
| Q |
98 |
gcctctaactctaatgaaaaggagtacttgaagatggctttggatattgccacttaagaatgatat |
163 |
Q |
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| T |
12128218 |
gcctctaaatctaaagaacaagactaccttaagatggctttggaaattgcaacttaagaatgatat |
12128283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 21213 - 21264
Alignment:
| Q |
112 |
tgaaaaggagtacttgaagatggctttggatattgccacttaagaatgatat |
163 |
Q |
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|||||| || ||||||| |||||||||||| |||||||||||||||| |||| |
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| T |
21213 |
tgaaaaagactacttgaggatggctttggaaattgccacttaagaattatat |
21264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 32061723 - 32061768
Alignment:
| Q |
236 |
ccctctcttttttgtgagccttcagctaaaaccccaatttcttctc |
281 |
Q |
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| T |
32061723 |
ccctctctcttttgtgagccgtcagctgaaaccctaatttcttctc |
32061768 |
T |
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