View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11612_low_13 (Length: 242)
Name: NF11612_low_13
Description: NF11612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11612_low_13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 43895681 - 43895907
Alignment:
| Q |
16 |
caccaacatcaactagagtctccacacctttgaagccatcataattctccaacatttctctcatgtagggcaatgacatcccagacatggaagcataaaa |
115 |
Q |
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| T |
43895681 |
caccaacatcaactagagtctccacacctttgaagccatcataattctccaacatttccctcatgtagggcaatgacatcccagacatggaagcataaaa |
43895780 |
T |
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| Q |
116 |
caaactcatttcttctggtcccttcgtgcaatatgcatatgctgcttctccgtgcagcttctcgaacggttccacagttggatcctccaccgcgtctccc |
215 |
Q |
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| T |
43895781 |
caaactcatttcttctggtcccttcgtgcaatatgcatatgctgcttctccgtgcagcttctcgaacggttccacagttggatcctccaccgcgtctccc |
43895880 |
T |
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| Q |
216 |
accaacggccatgctcgcaggtacggg |
242 |
Q |
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| T |
43895881 |
accaacggccatgctcgcaggtacggg |
43895907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 43907185 - 43907408
Alignment:
| Q |
16 |
caccaacatcaactagagtctccacacctttgaagccatcataattctccaacatttctctcatgtagggcaatgacatcccagacatggaagcataaaa |
115 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| ||||| |||||| |||||||||||||| ||||| |
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| T |
43907185 |
caccaacatcaactagagattccacacctttgaagccatcatacttctccaacatttcattcatgtggggcattgacattccagacatggaagcgtaaaa |
43907284 |
T |
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| Q |
116 |
caaactcatttcttctggtcccttcgtgcaatatgcatatgctgcttctccgtgcagcttctcgaacggttccacagttggatcctccaccgcgtctccc |
215 |
Q |
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| T |
43907285 |
caaactcatttcatctggtctcttcatgcagtatgcatatgctccttctccgtgtagcttctcgaacggctcaacagttggatcctccaccgcctctccc |
43907384 |
T |
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| Q |
216 |
accaacggccatgctcgcaggtac |
239 |
Q |
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| T |
43907385 |
accagcggccatgctcgcaggtac |
43907408 |
T |
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