View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11612_low_15 (Length: 228)
Name: NF11612_low_15
Description: NF11612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11612_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 43440176 - 43439974
Alignment:
| Q |
7 |
agaggagaagcaaaggaagctcaagggaacgcatgcctacggcctaccaatgcaaaatacaggatcaatacaccactcatagaagagacaatggcctctc |
106 |
Q |
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| T |
43440176 |
agaggaaaaacaaaggaagctcaagggaacgcatgcctacgccctaccaatgcaaaatacaggatcaatacaccactcatagaagagacaatgacctctc |
43440077 |
T |
|
| Q |
107 |
ttggtctttgttaaagcctatttccaattgggttgatatatacatgaatctccgacatgctcatattataaagagtcacgatatatatgttgatacttga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43440076 |
ttggtctttgttaaagcctatttccaattgggttgatatatacatgaatctccgacatgctcatattataaagagtcacaatatatatgttgatacttga |
43439977 |
T |
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| Q |
207 |
tac |
209 |
Q |
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||| |
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| T |
43439976 |
tac |
43439974 |
T |
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