View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11612_low_2 (Length: 778)

Name: NF11612_low_2
Description: NF11612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11612_low_2
NF11612_low_2
[»] chr3 (28 HSPs)
chr3 (29-755)||(20102225-20102943)
chr3 (137-291)||(10686545-10686699)
chr3 (131-300)||(47597468-47597637)
chr3 (126-300)||(20648699-20648873)
chr3 (387-660)||(19264177-19264456)
chr3 (387-471)||(31779393-31779477)
chr3 (214-300)||(24097495-24097581)
chr3 (387-464)||(47597253-47597330)
chr3 (437-471)||(7921143-7921177)
chr3 (437-471)||(16305589-16305623)
chr3 (437-469)||(17769434-17769466)
chr3 (437-469)||(19070735-19070767)
chr3 (33-77)||(45219682-45219726)
chr3 (99-158)||(27685898-27685957)
chr3 (437-471)||(6175020-6175054)
chr3 (386-535)||(9829458-9829606)
chr3 (437-471)||(12726672-12726706)
chr3 (177-235)||(13291691-13291749)
chr3 (177-235)||(17119062-17119120)
chr3 (437-471)||(18122055-18122089)
chr3 (437-471)||(29855092-29855126)
chr3 (437-471)||(38178086-38178120)
chr3 (437-471)||(40799580-40799614)
chr3 (132-294)||(42250688-42250849)
chr3 (437-471)||(47207387-47207421)
chr3 (437-471)||(47405864-47405898)
chr3 (437-470)||(19658416-19658449)
chr3 (437-470)||(22766958-22766991)
[»] chr2 (28 HSPs)
chr2 (76-299)||(25563907-25564131)
chr2 (93-291)||(28789417-28789614)
chr2 (296-524)||(25564175-25564402)
chr2 (400-581)||(26704206-26704386)
chr2 (378-534)||(24109732-24109888)
chr2 (177-300)||(42297618-42297741)
chr2 (130-300)||(9124205-9124374)
chr2 (439-534)||(24109604-24109699)
chr2 (206-294)||(26704537-26704625)
chr2 (179-279)||(33013551-33013651)
chr2 (95-300)||(24227737-24227941)
chr2 (604-659)||(9123935-9123989)
chr2 (177-264)||(29966507-29966594)
chr2 (200-294)||(19915464-19915558)
chr2 (177-235)||(27765607-27765665)
chr2 (676-740)||(24110036-24110101)
chr2 (375-510)||(33013796-33013932)
chr2 (439-471)||(27939663-27939695)
chr2 (127-187)||(28574692-28574752)
chr2 (604-660)||(42298043-42298099)
chr2 (96-183)||(17496134-17496221)
chr2 (175-278)||(21748514-21748616)
chr2 (437-471)||(9015756-9015790)
chr2 (181-235)||(16917414-16917468)
chr2 (437-471)||(20152388-20152422)
chr2 (437-471)||(28701600-28701634)
chr2 (437-471)||(40202779-40202813)
chr2 (127-284)||(19693028-19693185)
[»] chr1 (23 HSPs)
chr1 (401-534)||(23486256-23486389)
chr1 (375-659)||(9558493-9558783)
chr1 (387-531)||(14968925-14969070)
chr1 (119-287)||(10656347-10656515)
chr1 (379-471)||(11105089-11105182)
chr1 (93-203)||(14519805-14519913)
chr1 (186-294)||(9558257-9558365)
chr1 (386-467)||(25517251-25517332)
chr1 (175-235)||(22666307-22666367)
chr1 (437-471)||(10153716-10153750)
chr1 (175-233)||(17496644-17496702)
chr1 (437-471)||(21684426-21684460)
chr1 (437-470)||(18515676-18515709)
chr1 (387-464)||(29077104-29077181)
chr1 (439-471)||(25399052-25399084)
chr1 (33-77)||(43629567-43629611)
chr1 (129-276)||(29076801-29076947)
chr1 (437-471)||(2266771-2266805)
chr1 (437-471)||(16235671-16235705)
chr1 (437-471)||(23036869-23036903)
chr1 (437-471)||(23917511-23917545)
chr1 (437-471)||(29215478-29215512)
chr1 (130-294)||(19960225-19960384)
[»] chr5 (18 HSPs)
chr5 (296-467)||(17241380-17241554)
chr5 (308-534)||(22185662-22185891)
chr5 (407-534)||(6037719-6037846)
chr5 (128-302)||(30897058-30897231)
chr5 (143-292)||(17241605-17241754)
chr5 (177-275)||(22186024-22186122)
chr5 (177-291)||(28623438-28623552)
chr5 (423-471)||(19903308-19903356)
chr5 (386-457)||(17246042-17246113)
chr5 (181-235)||(22826182-22826236)
chr5 (177-235)||(27499847-27499905)
chr5 (625-736)||(26013219-26013329)
chr5 (191-235)||(37336676-37336720)
chr5 (177-223)||(11848660-11848706)
chr5 (437-471)||(25740791-25740825)
chr5 (437-471)||(33022346-33022380)
chr5 (437-471)||(34637252-34637286)
chr5 (437-470)||(17263147-17263180)
[»] scaffold0010 (2 HSPs)
scaffold0010 (400-534)||(135782-135916)
scaffold0010 (129-294)||(137026-137191)
[»] chr4 (22 HSPs)
chr4 (376-534)||(8860292-8860449)
chr4 (128-291)||(14116730-14116893)
chr4 (138-300)||(8502324-8502486)
chr4 (306-534)||(46342611-46342841)
chr4 (129-276)||(13977259-13977406)
chr4 (385-534)||(5718581-5718731)
chr4 (177-300)||(43358165-43358289)
chr4 (128-244)||(13929055-13929171)
chr4 (177-248)||(17743587-17743658)
chr4 (137-251)||(11011109-11011223)
chr4 (181-235)||(11419754-11419808)
chr4 (437-471)||(13693477-13693511)
chr4 (437-471)||(24619327-24619361)
chr4 (628-719)||(8501875-8501968)
chr4 (177-234)||(11545254-11545311)
chr4 (177-261)||(16404382-16404466)
chr4 (439-471)||(18473709-18473741)
chr4 (437-471)||(8105316-8105350)
chr4 (405-471)||(12791021-12791087)
chr4 (437-471)||(15193359-15193393)
chr4 (437-471)||(29121043-29121077)
chr4 (177-238)||(8190249-8190310)
[»] chr6 (15 HSPs)
chr6 (127-300)||(13744128-13744301)
chr6 (127-300)||(13749628-13749801)
chr6 (202-292)||(23601034-23601124)
chr6 (375-533)||(23601211-23601367)
chr6 (127-300)||(35036309-35036480)
chr6 (455-534)||(30701710-30701789)
chr6 (426-493)||(8868549-8868616)
chr6 (177-232)||(22562747-22562802)
chr6 (437-471)||(16265582-16265616)
chr6 (437-471)||(20731136-20731170)
chr6 (437-471)||(22801823-22801857)
chr6 (437-471)||(25595860-25595894)
chr6 (191-289)||(30701432-30701529)
chr6 (437-471)||(31127740-31127774)
chr6 (437-471)||(31720053-31720087)
[»] chr7 (18 HSPs)
chr7 (103-291)||(17880232-17880419)
chr7 (127-291)||(22731442-22731606)
chr7 (91-294)||(8309278-8309481)
chr7 (174-291)||(21019793-21019910)
chr7 (200-291)||(19196953-19197044)
chr7 (386-535)||(17879940-17880089)
chr7 (437-471)||(18362011-18362045)
chr7 (439-471)||(10254770-10254802)
chr7 (664-738)||(21019388-21019463)
chr7 (487-534)||(21019536-21019583)
chr7 (437-471)||(2499717-2499751)
chr7 (437-471)||(9762364-9762398)
chr7 (437-471)||(15467596-15467630)
chr7 (437-471)||(20598019-20598053)
chr7 (437-471)||(21283817-21283851)
chr7 (437-470)||(11376516-11376549)
chr7 (644-736)||(20052742-20052834)
chr7 (177-234)||(27707324-27707381)
[»] scaffold0194 (1 HSPs)
scaffold0194 (129-279)||(6685-6836)
[»] scaffold0669 (1 HSPs)
scaffold0669 (174-291)||(4695-4812)
[»] chr8 (13 HSPs)
chr8 (409-469)||(34062610-34062670)
chr8 (174-261)||(10329699-10329786)
chr8 (93-196)||(5345764-5345866)
chr8 (437-471)||(15598429-15598463)
chr8 (437-471)||(17687656-17687690)
chr8 (178-235)||(25724668-25724725)
chr8 (439-471)||(24634993-24635025)
chr8 (217-300)||(30214212-30214295)
chr8 (177-276)||(34062336-34062434)
chr8 (437-471)||(1210182-1210216)
chr8 (177-235)||(23520977-23521035)
chr8 (177-235)||(23584916-23584974)
chr8 (181-235)||(24277194-24277248)
[»] scaffold0340 (1 HSPs)
scaffold0340 (437-471)||(17644-17678)
[»] scaffold0043 (1 HSPs)
scaffold0043 (437-471)||(2218-2252)
[»] scaffold0001 (1 HSPs)
scaffold0001 (33-77)||(84730-84774)
[»] scaffold0859 (1 HSPs)
scaffold0859 (437-471)||(2666-2700)
[»] scaffold0479 (1 HSPs)
scaffold0479 (437-471)||(9653-9687)
[»] scaffold0351 (1 HSPs)
scaffold0351 (437-471)||(9421-9455)
[»] scaffold0311 (1 HSPs)
scaffold0311 (437-471)||(19758-19792)
[»] scaffold0171 (1 HSPs)
scaffold0171 (437-471)||(27823-27857)
[»] scaffold0023 (1 HSPs)
scaffold0023 (437-471)||(103256-103290)
[»] scaffold0003 (1 HSPs)
scaffold0003 (437-471)||(90449-90483)
[»] scaffold0105 (1 HSPs)
scaffold0105 (177-238)||(16824-16885)


Alignment Details
Target: chr3 (Bit Score: 545; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 29 - 755
Target Start/End: Original strand, 20102225 - 20102943
Alignment:
Q  29 acacgatatcgatgcatattgcttcatcgtagcctattgtaaatcggtgaagaaatgaagcctttgaaggtgacgtcataagctgaagaatctaaactag 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  20102225 acacgatatcgatgcatattgcttcatcgtagcctattgtaaatcggtgaagaaatgaagcctttgaaggtgacgtcataagctgaagaatctaaattag 20102324  T
Q  129 tttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaa 228  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20102325 tttgtcgtcttttgaaggaatgtcactatctgactctgagtagtgcattttgtgttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaa 20102424  T
Q  229 gagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacattaaccttttgatgtgttgacactcttcaacaactgctct 328  Q
    || ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||| | | |||||||||||||||||||||    
T  20102425 gacaatgcaacaaatcattctatttgaagcaaatgaattttgaatgactacacaacgactctaaccttttgatgcgctaacactcttcaacaactgctct 20102524  T
Q  329 cagaatatcttctatagatggacctgagtagttgaagaataaatataatactctgaaattttacaagtgttcttactctgtcaaaattaataccgcacaa 428  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  20102525 cagaatatcttctatagatggacctgagcagttgaagaataaatataatactctgaatttttacaagtgttctaactatgtcaaaattaataccgcacaa 20102624  T
Q  429 actcttaaagaatttcttataaactttcatatcttagaaattcgtaaatgtcagagtacatttgaactttattatattacatctctaattgtatatcaag 528  Q
    | |||||| |||||||||||||            ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20102625 attcttaacgaatttcttataa------------tagaaattcgtaagtgtaagagtacatttgaactttattatattacatctctaattgtatatcaag 20102712  T
Q  529 tgtaaactccaacacactttttacttgattaaattagtttgtagaagtctcttgtgtgattgagccatataagtctctt----gtgtaattgagcaaaga 624  Q
    ||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||     
T  20102713 tgtaaactccaacacacattttgcttgattaaattagattgtagaagtctcttgtgtgattgagccatataagtctctttctcgtgtaattgagcaaagg 20102812  T
Q  625 aagtctcttatttatgtgtttgagcaacttgtaatcaacgagattatagtagaaatccctctgaagtgcaatggactggactactctcggtttgtagtag 724  Q
    ||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||||    
T  20102813 aagtctcttgtttatgtgtttgagcaacttgtaatctatgagattatagtagaaatccctctgaagtgcaatggacaggactatttttggtttgtagtag 20102912  T
Q  725 gaaccaatataatttccatgttctctctctc 755  Q
    ||||||||||||||||||||| |||||||||    
T  20102913 gaaccaatataatttccatgtgctctctctc 20102943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 137 - 291
Target Start/End: Complemental strand, 10686699 - 10686545
Alignment:
Q  137 cttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgc 236  Q
    |||||||||||||||||||||| ||||  || |||| || ||||| ||||| | |||||||||||||||||||||| |||||||| | ||||||||||||    
T  10686699 cttctgaaggaatgtcactatcagactaagactagtacaatttgtattcttctgaccacgtgtagaaacaaacaaagaaattcaagggcaaagagaatgc 10686600  T
Q  237 aataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacatta 291  Q
    ||| |||||||| ||| |||||||| ||||||||||||||||| ||| |||||||    
T  10686599 aatgaatcattcaattagaagcaaaagaatttcgaatgactactcaatgacatta 10686545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 131 - 300
Target Start/End: Complemental strand, 47597637 - 47597468
Alignment:
Q  131 tgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaaga 230  Q
    ||||||||||| |||||||||||| |||  |||  ||||||| || ||||||||||  | |||||| || |||||||||||| |||||||||||||||||    
T  47597637 tgtcgtcttctaaaggaatgtcacaatcaaacttagagtagtacaatttgtcttctactaaccacgcgttgaaacaaacaaagaaattcaaagacaaaga 47597538  T
Q  231 gaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacattaaccttttga 300  Q
    ||||| | | |||||||| |||||||||||| ||||||||||||||||| ||| ||| |||||| |||||    
T  47597537 gaatgtagtgaatcattccatttgaagcaaaggaatttcgaatgactactcaatgacgttaaccatttga 47597468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 126 - 300
Target Start/End: Complemental strand, 20648873 - 20648699
Alignment:
Q  126 tagtttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagac 225  Q
    |||||||||||||||||||| || |||| |||| ||||| |||||||  | ||||| ||||| | |||||||  | | ||||||||| ||||||||| |     
T  20648873 tagtttgtcgtcttctgaagaaaggtcattatcagactcagagtagtataatttgtattcttctgaccacgtacaaatacaaacaaagaaattcaaatat 20648774  T
Q  226 aaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacattaaccttttga 300  Q
     ||||||||| || |||||||||||||| |||||||  |||||||||||||||| |||||||||| ||| |||||    
T  20648773 caagagaatgtaacaaatcattctatttaaagcaaagaaatttcgaatgactactcaacgacattgaccatttga 20648699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 387 - 660
Target Start/End: Complemental strand, 19264456 - 19264177
Alignment:
Q  387 ttttacaagtgttcttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaaattcgtaaatgtcagagta 486  Q
    |||||||||||  ||||||||||||||||  ||| | ||||| | |||| |||||||||||| ||  |||| ||||||||||||  ||| | |||||||     
T  19264456 ttttacaagtgcccttactctgtcaaaatcgataacacacaatcacttagagaatttcttattaatcttcaaatcttagaaatttttaagtctcagagtc 19264357  T
Q  487 catttgaactttattatattacatctctaattgtatatcaagtgtaaactccaacacactttttacttgattaaattagtttgtagaagtc----tcttg 582  Q
    ||||||||  ||||| ||||||| |||| ||||||||| ||||||||| || |||| |  ||||| |||||||| |||| |||||||||||    |||||    
T  19264356 catttgaaaattattgtattacacctctgattgtatattaagtgtaaaatcaaaca-atcttttatttgattaagttagattgtagaagtctctttcttg 19264258  T
Q  583 tgtgattgagccatataagtc---tcttgtgtaattgagcaaagaaagtctcttatttatgtgtttgagcaacttgtaatc 660  Q
    ||||||||||  ||| |||||   |||||| |  ||||||| || |||||||||  || |||| |||||||| ||||||||    
T  19264257 tgtgattgagaaatagaagtctcttcttgtatggttgagcataggaagtctcttgcttgtgtgattgagcaatttgtaatc 19264177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 387 - 471
Target Start/End: Complemental strand, 31779477 - 31779393
Alignment:
Q  387 ttttacaagtgttcttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaaattc 471  Q
    ||||| |||||| | |||||||||||||| || | ||||||||| ||| |||||||||||||||||||| |||||||| ||||||    
T  31779477 ttttaaaagtgtccgtactctgtcaaaatcaaaagcgcacaaacacttcaagaatttcttataaacttttatatcttataaattc 31779393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 214 - 300
Target Start/End: Original strand, 24097495 - 24097581
Alignment:
Q  214 aaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacattaaccttttga 300  Q
    ||||| || ||||| ||||||| |||| ||||||||||| ||||||||| ||||| |||||||||| ||||||||||| || |||||    
T  24097495 aaattaaaggacaacgagaatgtaatatatcattctattagaagcaaataaattttgaatgactactcaacgacattatccatttga 24097581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 387 - 464
Target Start/End: Complemental strand, 47597330 - 47597253
Alignment:
Q  387 ttttacaagtgttcttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatctta 464  Q
    ||||||||||||  ||||| ||||||||| |||| || |||||  |||| ||||||||||||||||||||||||||||    
T  47597330 ttttacaagtgtctttactttgtcaaaatcaatagcgtacaaatacttagagaatttcttataaactttcatatctta 47597253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 7921143 - 7921177
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||||||||||    
T  7921143 agaatttcttataaactttcatatcttagaaattc 7921177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 16305589 - 16305623
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||||||||||    
T  16305589 agaatttcttataaactttcatatcttagaaattc 16305623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 437 - 469
Target Start/End: Original strand, 17769434 - 17769466
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaat 469  Q
    |||||||||||||||||||||||||||||||||    
T  17769434 agaatttcttataaactttcatatcttagaaat 17769466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 437 - 469
Target Start/End: Original strand, 19070735 - 19070767
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaat 469  Q
    |||||||||||||||||||||||||||||||||    
T  19070735 agaatttcttataaactttcatatcttagaaat 19070767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 45219682 - 45219726
Alignment:
Q  33 gatatcgatgcatattgcttcatcgtagcctattgtaaatcggtg 77  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||||    
T  45219682 gatatggatgcctattgctttatcgtagcctattgtaaatcggtg 45219726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 27685957 - 27685898
Alignment:
Q  99 tgacgtcataagctgaagaatctaaactagtttgtcgtcttctgaaggaatgtcactatc 158  Q
    |||||| | |||||||||| | ||||| || |||||||||||| ||||||||||||||||    
T  27685957 tgacgttagaagctgaagactttaaacaagcttgtcgtcttctaaaggaatgtcactatc 27685898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 6175054 - 6175020
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  6175054 agaatttcttatcaactttcatatcttagaaattc 6175020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 386 - 535
Target Start/End: Original strand, 9829458 - 9829606
Alignment:
Q  386 attttacaagtgttcttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaaattcgtaaatgt-cagag 484  Q
    |||| ||| |||| |||||||||||||| |  | | | ||||||| |||| |||| |||||| ||| ||||||||||||||| ||| ||| | | ||||     
T  9829458 atttaacaggtgtccttactctgtcaaattacacaacacacaaacacttagagaaattcttacaaa-tttcatatcttagaatttcttaagtattcagaa 9829556  T
Q  485 tacatttgaactttattatattacatctctaattgtatatcaagtgtaaac 535  Q
      |||| |||||| | | ||||||| |||||||||||||||||||||||||    
T  9829557 gtcatt-gaacttaaatttattacacctctaattgtatatcaagtgtaaac 9829606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 12726672 - 12726706
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  12726672 agaatttcttatcaactttcatatcttagaaattc 12726706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 13291691 - 13291749
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatg 235  Q
    ||||||||||| | |||||||||||||||||||||| || | ||| |||||| ||||||    
T  13291691 tttgtcttcttctgaccacgtgtagaaacaaacaaagaactccaaggacaaaaagaatg 13291749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 17119120 - 17119062
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatg 235  Q
    ||||||||||| | | ||||| |||||||||||||| || ||||| |||||||||||||    
T  17119120 tttgtcttcttctgatcacgtatagaaacaaacaaagaacttcaaggacaaagagaatg 17119062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 18122055 - 18122089
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  18122055 agaatttcttatcaactttcatatcttagaaattc 18122089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 29855126 - 29855092
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  29855126 agaatttcttatcaactttcatatcttagaaattc 29855092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 38178086 - 38178120
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  38178086 agaatttcttatcaactttcatatcttagaaattc 38178120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 40799614 - 40799580
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  40799614 agaatttcttatcaactttcatatcttagaaattc 40799580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 294
Target Start/End: Original strand, 42250688 - 42250849
Alignment:
Q  132 gtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagag 231  Q
    |||||||||||| |||| ||||||||| ||| |  |||||| || ||||||||||| | ||| |||| | ||||||| ||| || ||||||||||||  |    
T  42250688 gtcgtcttctgatggaaggtcactatcagacact-agtagtacaatttgtcttcttctcaccccgtgcaaaaacaaataaagaacttcaaagacaaatgg 42250786  T
Q  232 aatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacattaacc 294  Q
    |||| || | || |||| | ||||||||||  |||||| ||| | |   ||||||||||||||    
T  42250787 aatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcaacgacattaacc 42250849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 47207421 - 47207387
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  47207421 agaatttcttatcaactttcatatcttagaaattc 47207387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 47405864 - 47405898
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  47405864 agaatttcttatcaactttcatatcttagaaattc 47405898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 470
Target Start/End: Original strand, 19658416 - 19658449
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaatt 470  Q
    |||||||||||| |||||||||||||||||||||    
T  19658416 agaatttcttatcaactttcatatcttagaaatt 19658449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 470
Target Start/End: Original strand, 22766958 - 22766991
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaatt 470  Q
    |||||||||||| |||||||||||||||||||||    
T  22766958 agaatttcttattaactttcatatcttagaaatt 22766991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 76 - 299
Target Start/End: Original strand, 25563907 - 25564131
Alignment:
Q  76 tgaagaaatgaagcctttgaaggtgacgtcataagctgaagaatctaaactagttt-gtcgtcttctgaaggaatgtcactatctgactccgagtagtgc 174  Q
    ||||||| | ||| || |||||||||||||| || ||||||| ||||||||||||| ||  |||||||||||||| |||||||| ||||  |||||||      
T  25563907 tgaagaactaaagactctgaaggtgacgtcaaaaactgaagactctaaactagtttcgttatcttctgaaggaatatcactatcagacttagagtagtat 25564006  T
Q  175 attttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatg 274  Q
    | ||||||||||| | |||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  25564007 aatttgtcttcttctgaccacgtgtagaaacaaacaaagaaattcaaaaacaaagagaatgcaacaaatcattctatttgaagaaaatgaatttcgaatg 25564106  T
Q  275 actacacaacgacattaaccttttg 299  Q
    ||||| |||||||||||||| ||||    
T  25564107 actactcaacgacattaaccatttg 25564131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 93 - 291
Target Start/End: Original strand, 28789417 - 28789614
Alignment:
Q  93 tgaaggtgacgtcataagctgaagaatctaaactagtttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttac 192  Q
    |||| ||||||| | ||||||||   ||||||| ||||||||||||| || ||||||||| | ||| |||||| || ||| || ||||||||||| | ||    
T  28789417 tgaatgtgacgttagaagctgaaagctctaaaccagtttgtcgtcttatggaggaatgtctccatcagactcc-agcagtacaatttgtcttcttatgac 28789515  T
Q  193 cacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacatta 291  Q
    |||||| ||||||||| ||   ||||||||||||||||||||| |||| ||||||||||| |||||||| ||||||  |||| |||  |||||||||||    
T  28789516 cacgtgcagaaacaaataatagaattcaaagacaaagagaatgtaatagatcattctattagaagcaaaagaattttaaatgtctattcaacgacatta 28789614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 296 - 524
Target Start/End: Original strand, 25564175 - 25564402
Alignment:
Q  296 tttgatgtgttgacactcttcaacaactgctctcagaatatcttctatagatggacctgagtagttgaagaataaatataatactctgaaattttacaag 395  Q
    ||||||| | ||||||||||||||||| | ||| ||| | ||| ||||| | |||| |||| |||||||||||   ||||| |||||||| |||||||||    
T  25564175 tttgatgcgctgacactcttcaacaacggatcttagattttctcctatataaggacatgagcagttgaagaattg-tataacactctgaatttttacaag 25564273  T
Q  396 tgttcttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaaattcgtaaatgtcagagtacatttgaac 495  Q
    |   |||||||||||||||| |||| ||||||||| || |  |||||||||| ||||||||||||| ||||||||| ||| | | ||||| ||| ||||     
T  25564274 ttcccttactctgtcaaaatcaatagcgcacaaacactcagcgaatttcttacaaactttcatatcatagaaattcttaagtcttagagtccatctgaat 25564373  T
Q  496 tttattatattacatctctaattgtatat 524  Q
    ||||||  |||||| |||| ||| |||||    
T  25564374 tttattgcattacacctctgattttatat 25564402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 581
Target Start/End: Complemental strand, 26704386 - 26704206
Alignment:
Q  400 cttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaaattcgtaaatgtcagagtacatttgaacttta 499  Q
    ||||||| |||||||  |||| | ||||||| |||  ||||||||||||||||||||||||||||||||||||||| | | ||||| ||| |||||||||    
T  26704386 cttactccgtcaaaagcaatagcacacaaacactttgagaatttcttataaactttcatatcttagaaattcgtaagtcttagagtccatatgaacttta 26704287  T
Q  500 ttatattacatctctaattgtatatcaagtgtaaactccaacacactttttacttgattaaattagtttgtagaagtctctt 581  Q
     | |||||||  ||| |||||||||||||| ||||  | |||| |  ||||| |||||||| |||| || ||||||||||||    
T  26704286 atgtattacacatctgattgtatatcaagtttaaaaccaaaca-atattttatttgattaagttagattatagaagtctctt 26704206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 378 - 534
Target Start/End: Original strand, 24109732 - 24109888
Alignment:
Q  378 actctgaaattttacaagtgttcttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaaattcgtaaat 477  Q
    |||||||| |||||||||||| ||||||||   ||||| ||||  | |  ||| ||||||||||| |||||||||||| ||||||||||||||| ||| |    
T  24109732 actctgaatttttacaagtgtccttactctaaaaaaatcaatagtgtattaacacttaaagaattccttataaacttttatatcttagaaattcttaagt 24109831  T
Q  478 gtcagagtacatttgaactttattatattacatctctaattgtatatcaagtgtaaa 534  Q
     |||||||  |||| || |||||| ||||||| |||| |||||||||||||||||||    
T  24109832 ctcagagtcaattttaattttattgtattacacctctgattgtatatcaagtgtaaa 24109888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 177 - 300
Target Start/End: Original strand, 42297618 - 42297741
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgac 276  Q
    ||||||||||| | ||||||||||||||  |||||| |||||||| |||||||| |||  || ||||||||||||| |||| ||||||| ||| ||||||    
T  42297618 tttgtcttcttctgaccacgtgtagaaattaacaaagaaattcaaggacaaagataatataagaaatcattctattagaagaaaatgaacttcaaatgac 42297717  T
Q  277 tacacaacgacattaaccttttga 300  Q
    ||| ||||||||||| || |||||    
T  42297718 tactcaacgacattatccatttga 42297741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 130 - 300
Target Start/End: Complemental strand, 9124374 - 9124205
Alignment:
Q  130 ttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaag 229  Q
    |||||||||||||||||||||||| |||  || || ||||||| || |||||||||||||   |||||||| | ||||||||| ||||| || |||||||    
T  9124374 ttgtcgtcttctgaaggaatgtcaatattagaatcagagtagtacaatttgtcttcttttgttcacgtgtatatacaaacaaagaaatttaaggacaaag 9124275  T
Q  230 agaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacattaaccttttga 300  Q
    |||||| || | |||||| ||||  ||||||| ||| ||||||||| ||| ||||||| ||| || |||||    
T  9124274 agaatgtaacatatcattatattataagcaaaggaa-ttcgaatgagtactcaacgacgttatccatttga 9124205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 439 - 534
Target Start/End: Original strand, 24109604 - 24109699
Alignment:
Q  439 aatttcttataaactttcatatcttagaaattcgtaaatgtcagagtacatttgaactttattatattacatctctaattgtatatcaagtgtaaa 534  Q
    ||||||||||||||||| |||| |||||||||| ||| | ||||||| |||||||| |||||| ||||||| || | |||||||||||||||||||    
T  24109604 aatttcttataaacttttatatattagaaattcttaagtctcagagtccatttgaattttattgtattacacctttgattgtatatcaagtgtaaa 24109699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 26704625 - 26704537
Alignment:
Q  206 aaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacattaacc 294  Q
    ||||||| |||||||| |||||||||||||||||| |||||||||   ||||||||  |||||| ||||||||  ||||||||||||||    
T  26704625 aaacaaagaaattcaaggacaaagagaatgcaatatatcattctaaaagaagcaaagaaatttcaaatgactattcaacgacattaacc 26704537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 33013551 - 33013651
Alignment:
Q  179 tgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgacta 278  Q
    ||||||||||| ||||| || ||||||||||||| ||||||||  |||| ||||||| || | |||||||||||  || |||| ||||||| ||||||||    
T  33013551 tgtcttcttttgaccacatgcagaaacaaacaaagaaattcaagaacaacgagaatgtaacagatcattctattataatcaaaggaatttctaatgacta 33013650  T
Q  279 c 279  Q
    |    
T  33013651 c 33013651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 300
Target Start/End: Original strand, 24227737 - 24227941
Alignment:
Q  95 aaggtgacgtcataagctgaagaatctaaactagtttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttacca 194  Q
    ||||| |||||| |||  ||||| ||| ||| |||||||| ||||| | |||||| ||| |||  || ||  ||||||  | ||||||||||| | ||||    
T  24227737 aaggttacgtcagaagtggaagactctgaaccagtttgtcatcttcaggaggaatatcaatattagattcaaagtagtagaatttgtcttcttctgacca 24227836  T
Q  195 cgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacattaacc 294  Q
    | || ||| ||||| ||| |||||||| || |||||||||| || | || ||| | || ||||||||  |||||||||||||||| ||||||||||| ||    
T  24227837 c-tgcagatacaaaaaaagaaattcaaggataaagagaatgtaacatattattatgttagaagcaaagaaatttcgaatgactactcaacgacattatcc 24227935  T
Q  295 ttttga 300  Q
     |||||    
T  24227936 atttga 24227941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 604 - 659
Target Start/End: Complemental strand, 9123989 - 9123935
Alignment:
Q  604 tcttgtgtaattgagcaaagaaagtctcttatttatgtgtttgagcaacttgtaat 659  Q
    |||||||||||||||||||| ||||||||||  ||||||||||||||| |||||||    
T  9123989 tcttgtgtaattgagcaaaggaagtctctta-ctatgtgtttgagcaagttgtaat 9123935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 29966507 - 29966594
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatga 264  Q
    ||||||||||| | ||||||||||||| |||||||| |||||||||  |||||| |||| |||  ||||||| ||  |||||||||||    
T  29966507 tttgtcttcttctaaccacgtgtagaatcaaacaaataaattcaaacgcaaagataatgtaatggatcattccataagaagcaaatga 29966594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 19915558 - 19915464
Alignment:
Q  200 agaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacattaacc 294  Q
    ||||||||||||| ||||  || ||||||| ||||| ||   |||||||||   |||||||| |||||| |||||||||| ||||||||||||||    
T  19915558 agaaacaaacaaagaaatctaaggacaaagggaatgaaaccgatcattctaaaagaagcaaaagaattttgaatgactactcaacgacattaacc 19915464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 27765607 - 27765665
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatg 235  Q
    ||||||||||| | |||||||||||||||||||||| || ||||| |||| ||||||||    
T  27765607 tttgtcttcttctgaccacgtgtagaaacaaacaaagaacttcaaggacagagagaatg 27765665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 740
Target Start/End: Original strand, 24110036 - 24110101
Alignment:
Q  676 gaaatccctctgaagtgcaatgg-actggactactctcggtttgtagtaggaaccaatataatttc 740  Q
    |||||||||  ||||||||| || ||||||||||||| ||||||| | ||||||||||||||||||    
T  24110036 gaaatccctaggaagtgcaaggggactggactactcttggtttgtgggaggaaccaatataatttc 24110101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 375 - 510
Target Start/End: Original strand, 33013796 - 33013932
Alignment:
Q  375 aatactctgaaattttacaagtgttcttactctgtcaaaattaa-taccgcacaaa-ctcttaaagaatttcttataaactttcatatcttagaaattcg 472  Q
    ||||||||||| |||||||||||  |||||||| ||||||| || || | |||||| |  ||| |||| |||||||||| | ||||||||||||| |||     
T  33013796 aatactctgaa-ttttacaagtgcccttactctatcaaaatcaagtagcacacaaaacatttagagaaattcttataaaatctcatatcttagaatttct 33013894  T
Q  473 taaatgtcagagtacatttgaactttattatattacat 510  Q
    ||| | | ||||| ||| |||||||||||| |||||||    
T  33013895 taagtctaagagttcatctgaactttattaaattacat 33013932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 439 - 471
Target Start/End: Complemental strand, 27939695 - 27939663
Alignment:
Q  439 aatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||||||||    
T  27939695 aatttcttataaactttcatatcttagaaattc 27939663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 28574692 - 28574752
Alignment:
Q  127 agtttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctt 187  Q
    ||||||||||||||||||| || ||| ||||| ||||  ||||||| ||||||||||||||    
T  28574692 agtttgtcgtcttctgaagaaaggtcgctatcagactatgagtagtacattttgtcttctt 28574752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 604 - 660
Target Start/End: Original strand, 42298043 - 42298099
Alignment:
Q  604 tcttgtgtaattgagcaaagaaagtctcttatttatgtgtttgagcaacttgtaatc 660  Q
    |||||| | ||||||||||| |||||||||| |||||||||||| ||| ||||||||    
T  42298043 tcttgtatgattgagcaaaggaagtctcttacttatgtgtttgatcaaattgtaatc 42298099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 17496221 - 17496134
Alignment:
Q  96 aggtgacgtcataagctgaagaatctaaactagtttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtct 183  Q
    ||||||||||| ||| |||||| | | ||| | ||||||||||||||||||| ||||||||||  ||||  |||||| || |||||||    
T  17496221 aggtgacgtcagaagttgaagactatgaacaattttgtcgtcttctgaaggattgtcactatcaaactcaaagtagtacaatttgtct 17496134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 278
Target Start/End: Original strand, 21748514 - 21748616
Alignment:
Q  175 attttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatg 274  Q
    ||||| ||||||| | ||||||||||||||   ||||| || |||||  |||||||||||| ||||||| |||| | ||  |||||||||||||| ||||    
T  21748514 attttatcttcttctgaccacgtgtagaaattgacaaataacttcaagcacaaagagaatg-aataaattattccagtttcagcaaatgaatttcaaatg 21748612  T
Q  275 acta 278  Q
    ||||    
T  21748613 acta 21748616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 9015756 - 9015790
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  9015756 agaatttcttatcaactttcatatcttagaaattc 9015790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 16917414 - 16917468
Alignment:
Q  181 tcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatg 235  Q
    ||||||||| |||||||||||| ||||||||  || ||||| |||||||||||||    
T  16917414 tcttcttttgaccacgtgtagatacaaacaaggaatttcaaggacaaagagaatg 16917468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 20152388 - 20152422
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  20152388 agaatttcttatcaactttcatatcttagaaattc 20152422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 28701600 - 28701634
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  28701600 agaatttcttatcaactttcatatcttagaaattc 28701634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 40202779 - 40202813
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||| ||||||    
T  40202779 agaatttcttataaactttcatatcttaaaaattc 40202813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 284
Target Start/End: Original strand, 19693028 - 19693185
Alignment:
Q  127 agtttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagaca 226  Q
    ||||||| || |||| ||||||| |||||||| || ||  |||||| || ||| || |||| | || |  |||||||||||| |   |||||||| ||||    
T  19693028 agtttgttgttttctaaaggaatatcactatcagattctaagtagtacaatttctcgtcttctgactatatgtagaaacaaatacgaaaattcaaggaca 19693127  T
Q  227 aagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaac 284  Q
    ||||||||| || | ||| ||||||  |||| ||| ||||||| ||||||||| ||||    
T  19693128 aagagaatgtaacagatctttctatgagaagaaaaggaatttcaaatgactactcaac 19693185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 9e-29; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 401 - 534
Target Start/End: Complemental strand, 23486389 - 23486256
Alignment:
Q  401 ttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaaattcgtaaatgtcagagtacatttgaactttat 500  Q
    ||||||| ||||||| ||||  |||||||| ||| || |||||||||||||||||||||||||||||||||  || | ||| ||| |||| |||||||||    
T  23486389 ttactctatcaaaatcaatagtgcacaaacacttcaataatttcttataaactttcatatcttagaaattctgaagtctcatagttcattcgaactttat 23486290  T
Q  501 tatattacatctctaattgtatatcaagtgtaaa 534  Q
    | ||||||| |||||||||||||| |||||||||    
T  23486289 tgtattacacctctaattgtatattaagtgtaaa 23486256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 375 - 659
Target Start/End: Original strand, 9558493 - 9558783
Alignment:
Q  375 aatactctgaaattttacaagtgttcttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaaattcgta 474  Q
    ||||||||||| |||||||||||  |||||  ||||||||| |||| ||||||||  |||| || ||||  || ||||||||||||||||||||||  ||    
T  9558493 aatactctgaa-ttttacaagtgcccttaccttgtcaaaatcaatatcgcacaaatacttagagtattttctacaaactttcatatcttagaaattttta 9558591  T
Q  475 aatgtcagagtacatttgaactttattatattacatctctaattgtatatcaagtgtaaactccaacacactttttacttgattaaattagtttgtagaa 574  Q
    | ||||  ||| ||| ||||||||||| ||||||| || | | ||||||||||||||||| || |||| |  ||||| || ||| | |||| ||||||||    
T  9558592 agtgtccaagtccatatgaactttattgtattacacctttgaatgtatatcaagtgtaaaatcaaaca-atcttttatttaattcagttagattgtagaa 9558690  T
Q  575 ----gtctcttgtgtgattgagccatataagtc----tcttgtgtaattgagcaaagaaagtctcttatttatgtgtttgagcaacttgtaat 659  Q
         | |||||| ||||||||| ||||| |||    |||||||| ||||||||||||||||||| || || |||| |||||||| |||||||    
T  9558691 atttctttcttgtttgattgagcaatataggtctttttcttgtgttattgagcaaagaaagtctcgtacttgtgtgcttgagcaatttgtaat 9558783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 387 - 531
Target Start/End: Original strand, 14968925 - 14969070
Alignment:
Q  387 ttttacaagtgttcttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaaattcgtaaatgtcagagta 486  Q
    ||||||||||   |||||||||||||||| ||||  |||||||| |||| | ||||||||||||||||||||||||||||||||| ||| | ||| |||     
T  14968925 ttttacaagtacccttactctgtcaaaatcaatagtgcacaaacacttagataatttcttataaactttcatatcttagaaattcttaagtctcaaagtc 14969024  T
Q  487 catt-tgaactttattatattacatctctaattgtatatcaagtgt 531  Q
    |||| ||||||| ||| ||||||| || | ||||||||||||||||    
T  14969025 cattatgaacttcattgtattacacctttgattgtatatcaagtgt 14969070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 119 - 287
Target Start/End: Complemental strand, 10656515 - 10656347
Alignment:
Q  119 tctaaactagtttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaatt 218  Q
    ||||||| |||||||| |||| ||||||||||||| |||||||||  | |||||  | ||||||||||| | |||||| | || ||||||||||  ||||    
T  10656515 tctaaacaagtttgtcatcttttgaaggaatgtcattatctgacttagtgtagtcaagtttgtcttcttctcaccacgagcagcaacaaacaaaggaatt 10656416  T
Q  219 caaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgac 287  Q
    ||| ||||  ||||||| || | || |||||||| |||||||||||||||||||| ||||  |||||||    
T  10656415 caaggacaccgagaatgtaacagattattctattagaagcaaatgaatttcgaataactattcaacgac 10656347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 379 - 471
Target Start/End: Complemental strand, 11105182 - 11105089
Alignment:
Q  379 ctctgaaa-ttttacaagtgttcttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||| |||| ||||| | |||||||| ||||||| || | ||||||||| |||| | |||||||||||||||||||||||||||||||||    
T  11105182 ctctgaaacttttgcaagtatccttactctatcaaaataaaaaacgcacaaacacttagataatttcttataaactttcatatcttagaaattc 11105089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 203
Target Start/End: Complemental strand, 14519913 - 14519805
Alignment:
Q  93 tgaaggtgacgtcataagctgaagaatctaaactagtttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttac 192  Q
    ||||||||| |||| |||||||||| | | |||||||||||||||||||||||||||||||  ||| ||||| |||||||  | ||||| ||||| | ||    
T  14519913 tgaaggtgatgtcagaagctgaagactttgaactagtttgtcgtcttctgaaggaatgtca--atcagactcagagtagtagaatttgttttcttctgac 14519816  T
Q  193 cacgtgtagaa 203  Q
    ||| |||||||    
T  14519815 cacctgtagaa 14519805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 186 - 294
Target Start/End: Original strand, 9558257 - 9558365
Alignment:
Q  186 tttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacg 285  Q
    |||| |||||||| ||||||||||||| ||||| || || ||| |||||| || ||||| ||  | |||||||||||||||||| ||||| ||  |||||    
T  9558257 ttttgaccacgtgcagaaacaaacaaataaatttaaggataaatagaatgtaacaaatcttttcaattgaagcaaatgaatttcaaatgaatattcaacg 9558356  T
Q  286 acattaacc 294  Q
    |||||||||    
T  9558357 acattaacc 9558365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 386 - 467
Target Start/End: Complemental strand, 25517332 - 25517251
Alignment:
Q  386 attttacaagtgttcttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaa 467  Q
    |||||||||||||  |||||||||| ||    ||| |||||||||||||| |||| |||||| |||||||||||||||||||    
T  25517332 attttacaagtgtctttactctgtcgaataatataacgcacaaactcttagagaaattcttacaaactttcatatcttagaa 25517251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 22666367 - 22666307
Alignment:
Q  175 attttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatg 235  Q
    ||||||||||||| | ||||||||||||||| |||||| || ||||| |||||||||||||    
T  22666367 attttgtcttcttctaaccacgtgtagaaacgaacaaagaacttcaaggacaaagagaatg 22666307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 10153750 - 10153716
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||||||||||    
T  10153750 agaatttcttataaactttcatatcttagaaattc 10153716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 17496644 - 17496702
Alignment:
Q  175 attttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaa 233  Q
    ||||||||||||| | ||||| |||||||||| ||||| |||||||| |||||||||||    
T  17496644 attttgtcttcttctgaccacatgtagaaacatacaaagaaattcaaggacaaagagaa 17496702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 21684426 - 21684460
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||||||||||    
T  21684426 agaatttcttataaactttcatatcttagaaattc 21684460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 437 - 470
Target Start/End: Complemental strand, 18515709 - 18515676
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaatt 470  Q
    ||||||||||||||||||||||||||||||||||    
T  18515709 agaatttcttataaactttcatatcttagaaatt 18515676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 387 - 464
Target Start/End: Original strand, 29077104 - 29077181
Alignment:
Q  387 ttttacaagtgttcttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatctta 464  Q
    |||||||||||  |||| ||||||||||| |||| || |||||| |||  ||| ||||||||||| ||||||||||||    
T  29077104 ttttacaagtgcccttattctgtcaaaatcaatagcgtacaaaccctttgagattttcttataaattttcatatctta 29077181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 439 - 471
Target Start/End: Complemental strand, 25399084 - 25399052
Alignment:
Q  439 aatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||||||||    
T  25399084 aatttcttataaactttcatatcttagaaattc 25399052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 43629567 - 43629611
Alignment:
Q  33 gatatcgatgcatattgcttcatcgtagcctattgtaaatcggtg 77  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||||    
T  43629567 gatatggatgcctattgctttatcgtagcctattgtaaatcggtg 43629611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 276
Target Start/End: Original strand, 29076801 - 29076947
Alignment:
Q  129 tttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaa 228  Q
    ||||||||||| || ||||| |||| |||| ||||| || ||||  | ||| ||||||| | | |||||| |||||||||||||  ||||||| ||||||    
T  29076801 tttgtcgtcttttgtaggaaggtcattatcagactctga-tagtataatttatcttcttctaaacacgtgcagaaacaaacaaaacaattcaaggacaaa 29076899  T
Q  229 gagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgac 276  Q
       |||| ||  ||| |||  |||||||||||||||||||| ||||||    
T  29076900 tgaaatgaaacgaataatttcatttgaagcaaatgaatttcaaatgac 29076947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 2266805 - 2266771
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  2266805 agaatttcttatcaactttcatatcttagaaattc 2266771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 16235671 - 16235705
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  16235671 agaatttcttatcaactttcatatcttagaaattc 16235705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 23036869 - 23036903
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  23036869 agaatttcttatcaactttcatatcttagaaattc 23036903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 23917545 - 23917511
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    ||||||||||||||||| |||||||||||||||||    
T  23917545 agaatttcttataaactatcatatcttagaaattc 23917511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 29215512 - 29215478
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  29215512 agaatttcttatcaactttcatatcttagaaattc 29215478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 294
Target Start/End: Original strand, 19960225 - 19960384
Alignment:
Q  130 ttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaag 229  Q
    ||||||||||||||||  ||||||| ||| ||||| || | || || ||||||||||| | |||||||| | ||||| ||||  || |||||||||||      
T  19960225 ttgtcgtcttctgaag--atgtcaccatcagactcaga-tggtacactttgtcttcttctgaccacgtgcaaaaacatacaag-aacttcaaagacaatt 19960320  T
Q  230 agaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacattaacc 294  Q
     ||||| || |||| ||||| ||||||||||| ||||||| |||| ||   ||||||||||||||    
T  19960321 ggaatg-aacaaataattctttttgaagcaaaggaatttcaaatgtcttttcaacgacattaacc 19960384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 4e-28; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 296 - 467
Target Start/End: Complemental strand, 17241554 - 17241380
Alignment:
Q  296 tttgatgtgttgacactcttcaacaactgctctcagaatatcttctatagatggacctgagtagttgaagaataaatataata---ctctgaaattttac 392  Q
    ||||||||| || |||||||||||||   |||| ||||| ||||||||| | |||||||| ||||||||||| ||||| ||||   ||||||| ||||||    
T  17241554 tttgatgtgctggcactcttcaacaatgactctaagaatttcttctatataaggacctgaatagttgaagaacaaatagaataacactctgaatttttac 17241455  T
Q  393 aagtgttcttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaa 467  Q
    |||||| ||||||   | |||||||||| ||||||| | |||| | ||||||||||||||| |||||||||||||    
T  17241454 aagtgtccttacttaattaaaattaatagcgcacaatcacttagataatttcttataaactctcatatcttagaa 17241380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 308 - 534
Target Start/End: Complemental strand, 22185891 - 22185662
Alignment:
Q  308 acactcttcaacaactgctctcagaatatcttctatagatggacctgagtagttgaagaa-ta-aatataatactctgaaattttacaagtgttcttact 405  Q
    ||||||||||||||| ||||||||||| ||| ||||| | |||||| || |||||||||| || || | ||||||||||| ||||||||||||  |||||    
T  22185891 acactcttcaacaacggctctcagaatttctcctatataaggaccttagcagttgaagaaatataagacaatactctgaa-ttttacaagtgtcattact 22185793  T
Q  406 ctgtcaaaatta-ataccgcacaaa-ctcttaaagaatttcttataaactttcatatcttagaaattcgtaaatgtcagagtacatttgaactttattat 503  Q
     |||||| || | ||| | |||||| | | || |||| |||||| ||||||||||||||||||| ||| ||| | | ||||| ||| ||||||||||| |    
T  22185792 atgtcaagatcatatagcacacaaaacacatagagaaattcttacaaactttcatatcttagaatttcttaagttttagagtccatctgaactttattct 22185693  T
Q  504 attacatctctaattgtatatcaagtgtaaa 534  Q
    |||| | |||| |||||||||||||||||||    
T  22185692 attatacctctgattgtatatcaagtgtaaa 22185662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 407 - 534
Target Start/End: Complemental strand, 6037846 - 6037719
Alignment:
Q  407 tgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaaattcgtaaatgtcagagtacatttgaactttattatatt 506  Q
    ||||||||| |||| |||||||||  ||| |||||||||||||||||||||||| ||| |||||| ||| | | ||||| ||||||||||||||| ||||    
T  6037846 tgtcaaaatcaatagcgcacaaacatttagagaatttcttataaactttcatatgttaaaaattcataagtcttagagtccatttgaactttattgtatt 6037747  T
Q  507 acatctctaattgtatatcaagtgtaaa 534  Q
    ||| || | ||| |||||||||||||||    
T  6037746 acacctttgattctatatcaagtgtaaa 6037719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 128 - 302
Target Start/End: Complemental strand, 30897231 - 30897058
Alignment:
Q  128 gtttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaa 227  Q
    |||||||||||| ||| |||||||||||||| | |||  | |||| || ||| | ||| |||||||||||| | ||||||||||  ||| |||| |||||    
T  30897231 gtttgtcgtcttatgatggaatgtcactatc-gtctctaaatagtacaatttattttccttttaccacgtgcaaaaacaaacaagaaaagtcaaggacaa 30897133  T
Q  228 agagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacattaaccttttgatg 302  Q
    |||||||| |||  ||| ||||||| ||||||||  | |||||||||||||  |||| |||||| || |||||||    
T  30897132 agagaatgtaatggatcgttctattagaagcaaagaattttcgaatgactattcaacaacattatccatttgatg 30897058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 143 - 292
Target Start/End: Complemental strand, 17241754 - 17241605
Alignment:
Q  143 aaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaa 242  Q
    ||||||||||||| || ||||| ||||| |  | ||||||||||| | || | ||| | ||||||||||| |||||| ||||||| || |||| ||||      
T  17241754 aaggaatgtcactgtcagactcagagtattaaaatttgtcttcttctaacaatgtgcaaaaacaaacaaagaaattcgaagacaaggataatgtaatagt 17241655  T
Q  243 tcattctatttgaagcaaatgaatttcgaatgactacacaacgacattaa 292  Q
    ||||||||||||||| ||| || ||| |||||||||| ||| ||||||||    
T  17241654 tcattctatttgaagtaaaggagttttgaatgactactcaatgacattaa 17241605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 275
Target Start/End: Complemental strand, 22186122 - 22186024
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatga 275  Q
    ||||||||||| | || ||||| |||||||||||||  ||||||||||||||||||||| || |  ||||| |||  |||||||| |||||| ||||||    
T  22186122 tttgtcttcttctgacaacgtgcagaaacaaacaaaggaattcaaagacaaagagaatgtaacatgtcattttataagaagcaaaggaattttgaatga 22186024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 291
Target Start/End: Complemental strand, 28623552 - 28623438
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgac 276  Q
    ||||||||||| | |||||||| ||||| ||| ||  |||||||| ||||| ||||||| |||   |||||||||| ||||||||||| |||||||||      
T  28623552 tttgtcttcttctgaccacgtgcagaaataaagaagaaaattcaaggacaaggagaatgtaattgttcattctattagaagcaaatgattttcgaatgtt 28623453  T
Q  277 tacacaacgacatta 291  Q
    ||  |||||||||||    
T  28623452 tattcaacgacatta 28623438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 423 - 471
Target Start/End: Complemental strand, 19903356 - 19903308
Alignment:
Q  423 gcacaaactcttaaagaatttcttataaactttcatatcttagaaattc 471  Q
    |||||| | |||| |||||||||||||||||||||||||||||||||||    
T  19903356 gcacaatcacttagagaatttcttataaactttcatatcttagaaattc 19903308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 386 - 457
Target Start/End: Complemental strand, 17246113 - 17246042
Alignment:
Q  386 attttacaagtgttcttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttca 457  Q
    ||||||||||||| |||||| |||||||||  ||| ||||||||| |||| | || ||||||||||||||||    
T  17246113 attttacaagtgtccttactatgtcaaaatatatatcgcacaaacacttagaaaaattcttataaactttca 17246042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 22826236 - 22826182
Alignment:
Q  181 tcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatg 235  Q
    ||||||| | |||||||||||||||||||||| |||||||| |||||| ||||||    
T  22826236 tcttcttctgaccacgtgtagaaacaaacaaaaaaattcaaggacaaatagaatg 22826182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 27499905 - 27499847
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatg 235  Q
    |||||| |||||| |||||||||||||||| ||||| || |||||||| ||||||||||    
T  27499905 tttgtcatcttttgaccacgtgtagaaacagacaaataacttcaaagataaagagaatg 27499847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 625 - 736
Target Start/End: Complemental strand, 26013329 - 26013219
Alignment:
Q  625 aagtctcttatttatgtgtttgagcaacttgtaatcaacgagattatagtagaaatccctctgaagtgcaatg-gactggactactctcggtttgtagta 723  Q
    ||||||||| ||| |||| |||||||  |||||||| | ||||||||||| |||||||||   |||||||| | || ||||||||||  ||||||||| |    
T  26013329 aagtctcttgtttgtgtgcttgagcat-ttgtaatctatgagattatagt-gaaatcccttgaaagtgcaaggagattggactactcctggtttgtagga 26013232  T
Q  724 ggaaccaatataa 736  Q
    |||||||||||||    
T  26013231 ggaaccaatataa 26013219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 37336720 - 37336676
Alignment:
Q  191 accacgtgtagaaacaaacaaacaaattcaaagacaaagagaatg 235  Q
    |||||||||||||||||||||| || ||||| |||||||||||||    
T  37336720 accacgtgtagaaacaaacaaagaacttcaaggacaaagagaatg 37336676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 11848660 - 11848706
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaag 223  Q
    ||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  11848660 tttgtcttcttttgaccacgtgcagaaaaaaacaaagaaattcaaag 11848706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 25740825 - 25740791
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  25740825 agaatttcttatcaactttcatatcttagaaattc 25740791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 33022380 - 33022346
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  33022380 agaatttcttatcaactttcatatcttagaaattc 33022346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 34637286 - 34637252
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||| ||||||||||||    
T  34637286 agaatttcttataaactttcatgtcttagaaattc 34637252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 470
Target Start/End: Original strand, 17263147 - 17263180
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaatt 470  Q
    |||||||||||| |||||||||||||||||||||    
T  17263147 agaatttcttattaactttcatatcttagaaatt 17263180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 400 - 534
Target Start/End: Complemental strand, 135916 - 135782
Alignment:
Q  400 cttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaaattcgtaaatgtcagagtacatttgaacttta 499  Q
    |||||| ||||||||| |||| |||| |||| |||| |||| ||||||||||||||||||||||| |||||||||| | | ||||| ||| | ||| |||    
T  135916 cttactatgtcaaaatcaatagcgcataaacacttagagaaattcttataaactttcatatcttataaattcgtaagtcttagagtccatctaaacctta 135817  T
Q  500 ttatattacatctctaattgtatatcaagtgtaaa 534  Q
    || ||||||| |||| |||||||||||||||||||    
T  135816 ttttattacacctctgattgtatatcaagtgtaaa 135782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 294
Target Start/End: Complemental strand, 137191 - 137026
Alignment:
Q  129 tttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaa 228  Q
    ||||| |||||||||||||| ||| ||||| ||||| || |||| || ||||||  ||| | |||||||| ||| |||||||||  ||||||| ||||||    
T  137191 tttgttgtcttctgaaggaaggtcgctatcagactctgaatagtacaatttgtcaccttctcaccacgtgcagatacaaacaaa-gaattcaaggacaaa 137093  T
Q  229 gagaatgcaataaatcattc-tatttgaagcaaatgaatttcgaatgactacacaacgacattaacc 294  Q
       |||| || ||| ||||| || | ||||||||  |||||||||| ||||| |||| |||||||||    
T  137092 agaaatgaaacaaaccattcttaatagaagcaaagaaatttcgaattactactcaacaacattaacc 137026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 6e-27; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 376 - 534
Target Start/End: Complemental strand, 8860449 - 8860292
Alignment:
Q  376 atactctgaaattttacaagtgttcttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaaattcgtaa 475  Q
    |||||||||| |||| ||||||  |||||||| |||||||||||| |||| |||| |||| | | ||||||||||||||||||||||||||||||| ||     
T  8860449 atactctgaa-ttttgcaagtgcccttactctatcaaaattaatagcgcaaaaacacttagatagtttcttataaactttcatatcttagaaattcttat 8860351  T
Q  476 atgtcagagtacatttgaactttattatattacatctctaattgtatatcaagtgtaaa 534  Q
     | ||||||| | | | ||||||||| | |||||||||||||||||||| ||| |||||    
T  8860350 gtctcagagttcgtctaaactttattgtcttacatctctaattgtatattaagagtaaa 8860292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 128 - 291
Target Start/End: Complemental strand, 14116893 - 14116730
Alignment:
Q  128 gtttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaa 227  Q
    |||||||||||||||| |||||||||||||| |||||  | |||| ||  || ||||||| | ||||| || ||||||||||||  ||||||||||||||    
T  14116893 gtttgtcgtcttctgagggaatgtcactatcagactctaaatagtacaaattttcttcttctgaccacatgaagaaacaaacaagaaaattcaaagacaa 14116794  T
Q  228 agagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacatta 291  Q
     ||||||| |  | ||||||||||| |||||||| || ||| |||||||||  |||||||||||    
T  14116793 ggagaatgtagcagatcattctattagaagcaaaagatttttgaatgactattcaacgacatta 14116730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 138 - 300
Target Start/End: Complemental strand, 8502486 - 8502324
Alignment:
Q  138 ttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgca 237  Q
    ||||||||||| ||| || ||   ||| ||||||| |||||||||||||| | | || ||| | ||||||||| | |||||||| ||||||||||||| |    
T  8502486 ttctgaaggaaggtcgctttcaatctcagagtagtacattttgtcttcttctgatcatgtgcataaacaaacagagaaattcaaggacaaagagaatgta 8502387  T
Q  238 ataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacattaaccttttga 300  Q
    ||| | |||||||||  ||||||| ||||||| ||||||||| ||||||||||| || |||||    
T  8502386 atataccattctattaaaagcaaaggaatttcaaatgactactcaacgacattatccatttga 8502324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 306 - 534
Target Start/End: Complemental strand, 46342841 - 46342611
Alignment:
Q  306 tgacactcttcaacaactgctctcagaatatcttctatagatggacctgagtagttgaagaataaatat-aatactctgaaattttacaagtgttcttac 404  Q
    ||||||||||||||||| ||||||||||  ||| ||| | | ||||||| | |||||||||| | | |  |||||||| ||||||||||||||| ||| |    
T  46342841 tgacactcttcaacaacggctctcagaacttctcctacataaggacctgggcagttgaagaaaatacaacaatactct-aaattttacaagtgtccttgc 46342743  T
Q  405 tctgtcaaaattaataccgcacaaactc--ttaaagaatttcttataaactttcatatcttagaaattcgtaaatgtcagagtacatttgaactttatta 502  Q
    ||||||||||| ||    |||||||  |  ||| | || || |||  |||||||||||||||||  ||| ||| | ||||||| ||| |||||||||||     
T  46342742 tctgtcaaaatcaaataggcacaaaaacatttagaaaaattattactaactttcatatcttagagtttcttaagtttcagagtccatctgaactttattg 46342643  T
Q  503 tattacatctctaattgtatatcaagtgtaaa 534  Q
    |||||||  ||| |||||||||||||||||||    
T  46342642 tattacacatctgattgtatatcaagtgtaaa 46342611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 129 - 276
Target Start/End: Original strand, 13977259 - 13977406
Alignment:
Q  129 tttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaa 228  Q
    |||||| ||||||||||||| ||| ||||| ||||| ||  ||| || |||| |||||| | || ||||| ||||||||||||| || |||||||||||     
T  13977259 tttgtcttcttctgaaggaaggtcgctatcagactctgataagtacagtttgccttcttctgactacgtgcagaaacaaacaaagaacttcaaagacaat 13977358  T
Q  229 gagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgac 276  Q
     |||||  || |||| ||||| ||||||||||| ||||||| ||||||    
T  13977359 tagaattaaacaaataattctttttgaagcaaaggaatttcaaatgac 13977406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 385 - 534
Target Start/End: Original strand, 5718581 - 5718731
Alignment:
Q  385 aattttacaagtgttcttactctgtcaaaattaataccgcacaaactcttaa-agaatttcttataaactttcatatcttagaaattcgtaaatgtcaga 483  Q
    |||||||||||||  | ||||||| || ||| |||| ||||||||| ||||| ||||||||||| ||| |||||||||||| |||||| ||| | |||      
T  5718581 aattttacaagtgcccatactctgccataatcaatagcgcacaaacacttaagagaatttcttaaaaaatttcatatcttaaaaattcttaagtctcatt 5718680  T
Q  484 gtacatttgaactttattatattacatctctaattgtatatcaagtgtaaa 534  Q
    || ||| || |||| ||| ||||||| || | ||| |||||||||||||||    
T  5718681 gttcatatgtacttcattgtattacacctttgattttatatcaagtgtaaa 5718731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 177 - 300
Target Start/End: Complemental strand, 43358289 - 43358165
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaa-ttcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatga 275  Q
    ||||||||||| | | ||||||||||||| |||||| ||| |||||  |||||||||||| ||   ||||||||||| |||||||| ||||||||||| |    
T  43358289 tttgtcttcttgtgatcacgtgtagaaacgaacaaagaaaattcaagcacaaagagaatgtaacggatcattctattagaagcaaaagaatttcgaataa 43358190  T
Q  276 ctacacaacgacattaaccttttga 300  Q
    |||| | |||| |||| || |||||    
T  43358189 ctactcgacgaaattatccatttga 43358165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 13929055 - 13929171
Alignment:
Q  128 gtttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaa 227  Q
    |||||| ||||||||| ||||||||||||||  |||| || ||||  | |||||||||||   |||||||| | ||||||||||  |||||||| |||||    
T  13929055 gtttgttgtcttctgatggaatgtcactatcatactctgaatagtagagtttgtcttcttcaaaccacgtgcaaaaacaaacaaggaaattcaaggacaa 13929154  T
Q  228 agagaatgcaataaatc 244  Q
    | |||||| || |||||    
T  13929155 acagaatgtaacaaatc 13929171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 17743658 - 17743587
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattc 248  Q
    ||||||||||| | |||||||| ||||||||||||| || ||||| ||||||||||||| || | |||||||    
T  17743658 tttgtcttcttatgaccacgtgcagaaacaaacaaagaagttcaatgacaaagagaatgtaacagatcattc 17743587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 251
Target Start/End: Original strand, 11011109 - 11011223
Alignment:
Q  137 cttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgc 236  Q
    ||||||| |||||||||||  | ||||| || || | || ||||| ||||| | ||||| |||||||||||||||  |||| ||||||| |||| ||||     
T  11011109 cttctgatggaatgtcacttccagactctgaataatacaatttgttttcttctgaccacatgtagaaacaaacaagaaaatacaaagacgaagataatgt 11011208  T
Q  237 aataaatcattctat 251  Q
    |||| ||||||||||    
T  11011209 aatagatcattctat 11011223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 11419808 - 11419754
Alignment:
Q  181 tcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatg 235  Q
    ||||||| | |||||||||||||||||||||| || ||||| |||||||||||||    
T  11419808 tcttcttctgaccacgtgtagaaacaaacaaagaacttcaaggacaaagagaatg 11419754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 13693511 - 13693477
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||||||||||    
T  13693511 agaatttcttataaactttcatatcttagaaattc 13693477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 24619361 - 24619327
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||||||||||    
T  24619361 agaatttcttataaactttcatatcttagaaattc 24619327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 628 - 719
Target Start/End: Complemental strand, 8501968 - 8501875
Alignment:
Q  628 tctcttatttatgtgtttgagcaacttgtaatcaac-gagattatagtagaaatccctctgaagtgcaatgga-ctggactactctcggtttgt 719  Q
    ||||||| |||||||||| ||||| |||||||| |  |||||||||||| |||| |||  ||||||||| ||  ||||||||||||||||||||    
T  8501968 tctcttacttatgtgtttaagcaaattgtaatctagtgagattatagtaaaaattccttggaagtgcaaggggtctggactactctcggtttgt 8501875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 11545311 - 11545254
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaat 234  Q
    ||||||||||| | |||| ||||||||||||||||| || ||||| ||||||||||||    
T  11545311 tttgtcttcttctgaccatgtgtagaaacaaacaaaaaacttcaaggacaaagagaat 11545254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 16404382 - 16404466
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaa 261  Q
    ||||||||||| | ||||||||  |||||||||||| || ||||| |||||||||| || || ||||||||| ||  ||||||||    
T  16404382 tttgtcttcttctgaccacgtgctgaaacaaacaaataacttcaatgacaaagagattgtaacaaatcattccataagaagcaaa 16404466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 439 - 471
Target Start/End: Complemental strand, 18473741 - 18473709
Alignment:
Q  439 aatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||||||||    
T  18473741 aatttcttataaactttcatatcttagaaattc 18473709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 8105350 - 8105316
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  8105350 agaatttcttatcaactttcatatcttagaaattc 8105316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 405 - 471
Target Start/End: Complemental strand, 12791087 - 12791021
Alignment:
Q  405 tctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaaattc 471  Q
    ||||||||||| || | |||| |||| |||||  |||||| ||||||||||||||||||| ||||||    
T  12791087 tctgtcaaaatcaaaagcgcataaacacttaagaaatttcatataaactttcatatcttaaaaattc 12791021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 15193393 - 15193359
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    ||||||||||||||||||| |||||||||||||||    
T  15193393 agaatttcttataaacttttatatcttagaaattc 15193359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 29121077 - 29121043
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  29121077 agaatttcttatcaactttcatatcttagaaattc 29121043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 8190249 - 8190310
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaa 238  Q
    ||||||||||||| || || |||||||||||||||| || ||||||   |||||||||||||    
T  8190249 tttgtcttcttttgactacatgtagaaacaaacaaaaaacttcaaaataaaagagaatgcaa 8190310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 127 - 300
Target Start/End: Original strand, 13744128 - 13744301
Alignment:
Q  127 agtttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagaca 226  Q
    ||||||||||||||||||  |||||||||||| ||    ||||||| || ||||||  ||||| |||||||| ||||| ||||||  |||||||| ||||    
T  13744128 agtttgtcgtcttctgaaacaatgtcactatcagaaagtgagtagtacagtttgtcgccttttgaccacgtgcagaaaaaaacaagaaaattcaatgaca 13744227  T
Q  227 aagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacattaaccttttga 300  Q
    ||||||||| || ||||||||||||| || |  || || ||||||||||||||||||||| |||| || |||||    
T  13744228 aagagaatgtaacaaatcattctattagaggagaaagattttcgaatgactacacaacgatattatccatttga 13744301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 127 - 300
Target Start/End: Original strand, 13749628 - 13749801
Alignment:
Q  127 agtttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagaca 226  Q
    ||||||||||||||||||  |||||||||||| ||    ||||||| || ||||||  ||||| |||||||| ||||| ||||||  |||||||| ||||    
T  13749628 agtttgtcgtcttctgaaacaatgtcactatcagaaagtgagtagtacagtttgtcgccttttgaccacgtgcagaaaaaaacaagaaaattcaatgaca 13749727  T
Q  227 aagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacattaaccttttga 300  Q
    ||||||||| || ||||||||||||| || |  || || ||||||||||||||||||||| |||| || |||||    
T  13749728 aagagaatgtaacaaatcattctattagaggagaaagattttcgaatgactacacaacgatattatccatttga 13749801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 202 - 292
Target Start/End: Original strand, 23601034 - 23601124
Alignment:
Q  202 aaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacattaa 292  Q
    ||||||||||| |||||||| ||||||| ||||| || ||||||||||| |||||||| | |||||| |||||||||| ||||||||||||    
T  23601034 aaacaaacaaagaaattcaaggacaaagggaatgaaacaaatcattctaattgaagcagaggaattttgaatgactactcaacgacattaa 23601124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 375 - 533
Target Start/End: Original strand, 23601211 - 23601367
Alignment:
Q  375 aatactctgaaattttacaagtgttcttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaaattcgta 474  Q
    |||||||| ||||||||| ||||  |||| ||| ||||||| |||| ||||||| | |||| ||||||||||| |||||||||| |||||||||||  ||    
T  23601211 aatactct-aaattttactagtgcccttattctatcaaaatcaatagcgcacaagcacttagagaatttcttacaaactttcatgtcttagaaattaata 23601309  T
Q  475 aatgtcagagtacatttgaactttattatattacatctctaattgtatatcaagtgtaa 533  Q
      | ||||||| ||| | ||||||||| ||||||| |||| | ||||||| ||||||||    
T  23601310 cgtctcagagtccatctaaactttattgtattacacctctgagtgtatat-aagtgtaa 23601367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 127 - 300
Target Start/End: Complemental strand, 35036480 - 35036309
Alignment:
Q  127 agtttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagaca 226  Q
    |||||||| ||||||||||||| || ||| || ||||| |||||   ||  |||||| ||||| | |||||| | ||||||||||| ||||| |||| ||    
T  35036480 agtttgtcatcttctgaaggaaggttactttcggactcagagtaccaca-gttgtctacttttgatcacgtgcaaaaacaaacaaagaaatttaaaggca 35036382  T
Q  227 aagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacattaaccttttga 300  Q
    |||| |||| ||| |||||||| |||  |||||||||||| |||||||| ||| ||||||||||| || |||||    
T  35036381 aagataatgtaatgaatcattcaattataagcaaatgaatatcgaatga-tactcaacgacattatccatttga 35036309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 455 - 534
Target Start/End: Original strand, 30701710 - 30701789
Alignment:
Q  455 tcatatcttagaaattcgtaaatgtcagagtacatttgaactttattatattacatctctaattgtatatcaagtgtaaa 534  Q
    ||||||||||||||||| ||| ||| |||||  |||| ||||| ||| ||||| | |||| |||||||||||||||||||    
T  30701710 tcatatcttagaaattcttaagtgttagagtgaattttaacttcattgtattaaacctctgattgtatatcaagtgtaaa 30701789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 493
Target Start/End: Original strand, 8868549 - 8868616
Alignment:
Q  426 caaactcttaaagaatttcttataaactttcatatcttagaaattcgtaaatgtcagagtacatttga 493  Q
    ||||| |||||| || |||||| ||||||||| |||||||| |||| ||||||||||| | |||||||    
T  8868549 caaacacttaaaaaagttcttacaaactttcacatcttagatattcttaaatgtcagaattcatttga 8868616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 22562747 - 22562802
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagaga 232  Q
    ||||| ||||| | ||||||||||||||||||||||  ||||||| ||||||||||    
T  22562747 tttgttttcttctgaccacgtgtagaaacaaacaaattaattcaaggacaaagaga 22562802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 16265582 - 16265616
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  16265582 agaatttcttatcaactttcatatcttagaaattc 16265616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 20731136 - 20731170
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  20731136 agaatttcttatcaactttcatatcttagaaattc 20731170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 22801857 - 22801823
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  22801857 agaatttcttatcaactttcatatcttagaaattc 22801823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 25595894 - 25595860
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||| ||||||||||||    
T  25595894 agaatttcttataaactttcatttcttagaaattc 25595860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 289
Target Start/End: Original strand, 30701432 - 30701529
Alignment:
Q  191 accacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacat 289  Q
    |||| ||||||||| ||||||| |||| ||| | ||||||||||| |||| ||||||||| | |||||||   |||||| ||||| ||| |||||||||    
T  30701432 accaggtgtagaaataaacaaaaaaat-caacggcaaagagaatgtaatagatcattctaatagaagcaataaaatttccaatgattactcaacgacat 30701529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 31127740 - 31127774
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||||| ||||    
T  31127740 agaatttcttataaactttcatatcttagatattc 31127774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 31720053 - 31720087
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    ||||||||||||||| |||||||||||||||||||    
T  31720053 agaatttcttataaattttcatatcttagaaattc 31720087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 9e-26; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 103 - 291
Target Start/End: Complemental strand, 17880419 - 17880232
Alignment:
Q  103 gtcataagctgaagaatctaaactagtttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtaga 202  Q
    |||| ||| |||||| ||| ||| |||||||  |||||||||| |||||||||||| ||||| | ||||| || ||||||||||| | |||| |||||||    
T  17880419 gtcagaagatgaagactcttaaccagtttgttttcttctgaagaaatgtcactatcagactcagggtagtacaatttgtcttcttctaaccatgtgtaga 17880320  T
Q  203 aacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacatta 291  Q
    || ||||||| ||||||||  |||||||||| | || | ||||||||||| |||| ||||||||||  |||  |||| |||||||||||    
T  17880319 aa-aaacaaagaaattcaagtacaaagagaaagtaacagatcattctattagaagaaaatgaatttttaatagctactcaacgacatta 17880232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 127 - 291
Target Start/End: Complemental strand, 22731606 - 22731442
Alignment:
Q  127 agtttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagaca 226  Q
    |||||||||| || ||||||||||||||||||  |||| ||||||| || ||| ||||||| | |||||||| ||||| ||||||| |||||||||||||    
T  22731606 agtttgtcgtgttttgaaggaatgtcactatcaaactcagagtagtacaatttatcttcttctgaccacgtgcagaaa-aaacaaataaattcaaagaca 22731508  T
Q  227 aagagaatgcaataaat-cattctatttgaagcaaatgaatttcgaatgactacacaacgacatta 291  Q
    ||||||||| || | || ||||| ||| || ||||  |||||| || ||||||| |||||||||||    
T  22731507 aagagaatggaaaagatccattccattagatgcaagggaattttgagtgactactcaacgacatta 22731442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 91 - 294
Target Start/End: Original strand, 8309278 - 8309481
Alignment:
Q  91 tttgaaggtgacgtcataagctgaagaatctaaactagtttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttcttttt 190  Q
    |||||||||||||||| ||  |||||| ||| ||||||||| ||||||||| ||| ||||||||||||  ||||   ||||| || ||| ||||||| |     
T  8309278 tttgaaggtgacgtcagaatgtgaagactctgaactagtttttcgtcttctaaagtaatgtcactatcaaactcatggtagtacagtttttcttcttcta 8309377  T
Q  191 accacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacatt 290  Q
    ||||||||||||||||||||||  |||  || || |||||||||| ||   ||||| |||||   |||||||||||||  | ||||||| |||  |||||    
T  8309378 accacgtgtagaaacaaacaaaggaatcaaatgataaagagaatgtaactgatcatgctattaagagcaaatgaattttaagtgactactcaataacatt 8309477  T
Q  291 aacc 294  Q
    ||||    
T  8309478 aacc 8309481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 291
Target Start/End: Complemental strand, 21019910 - 21019793
Alignment:
Q  174 cattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaat 273  Q
    |||||||| ||| | | ||||||||  |||||||||||| |||||||| |  |||||||||| || ||||||||| ||| ||||||||  |||||||| |    
T  21019910 cattttgttttcatctgaccacgtgctgaaacaaacaaaaaaattcaaggggaaagagaatgtaacaaatcattccattagaagcaaagaaatttcgagt 21019811  T
Q  274 gactacacaacgacatta 291  Q
    |||||| |||| ||||||    
T  21019810 gactactcaaccacatta 21019793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 19196953 - 19197044
Alignment:
Q  200 agaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacatta 291  Q
    ||||||||||||| |||||||| |||||||| |||  || || ||||| |||| ||||||||  |||||| ||||||||| |||||||||||    
T  19196953 agaaacaaacaaagaaattcaatgacaaagaaaatataacaagtcattttattagaagcaaagtaatttcaaatgactactcaacgacatta 19197044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 386 - 535
Target Start/End: Complemental strand, 17880089 - 17879940
Alignment:
Q  386 attttacaagtgttcttactctgtcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaaattcgtaaatgtcagagt 485  Q
    |||||| |||||| |||||||||||||| |  ||| | ||||||| |||| | || |||||| |||||||||||| |||||| ||| ||| | |||||      
T  17880089 attttaaaagtgtccttactctgtcaaattatatagcacacaaacacttacataaattcttacaaactttcatatattagaatttcttaagtatcagaag 17879990  T
Q  486 acatttgaactttattatattacatctctaattgtatatcaagtgtaaac 535  Q
     ||| ||||||| | | | ||||| |||| ||| ||||||||||||||||    
T  17879989 tcatatgaacttaaatttcttacacctctgattatatatcaagtgtaaac 17879940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 18362011 - 18362045
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||||||||||    
T  18362011 agaatttcttataaactttcatatcttagaaattc 18362045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 439 - 471
Target Start/End: Original strand, 10254770 - 10254802
Alignment:
Q  439 aatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||||||||    
T  10254770 aatttcttataaactttcatatcttagaaattc 10254802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 738
Target Start/End: Complemental strand, 21019463 - 21019388
Alignment:
Q  664 gagattatagtagaaatccctctgaagtgcaatgga-ctggactactctcggtttgtagtaggaaccaatataatt 738  Q
    |||||||||||  ||||||||  ||||| ||| ||| ||| |||||||||||||||| | ||||||||||||||||    
T  21019463 gagattatagttaaaatcccttggaagtacaagggaactgaactactctcggtttgtggaaggaaccaatataatt 21019388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 534
Target Start/End: Complemental strand, 21019583 - 21019536
Alignment:
Q  487 catttgaactttattatattacatctctaattgtatatcaagtgtaaa 534  Q
    ||||||||||| ||| | |||||||||| |||||||||||||||||||    
T  21019583 catttgaacttaatttttttacatctctgattgtatatcaagtgtaaa 21019536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 2499751 - 2499717
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  2499751 agaatttcttatcaactttcatatcttagaaattc 2499717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 9762398 - 9762364
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    ||||||||||||||||||||| |||||||||||||    
T  9762398 agaatttcttataaactttcaaatcttagaaattc 9762364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 15467630 - 15467596
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  15467630 agaatttcttatcaactttcatatcttagaaattc 15467596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 20598053 - 20598019
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||| ||||||||||||||||||||||||    
T  20598053 agaatttcttgtaaactttcatatcttagaaattc 20598019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 21283817 - 21283851
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  21283817 agaatttcttatcaactttcatatcttagaaattc 21283851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 470
Target Start/End: Complemental strand, 11376549 - 11376516
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaatt 470  Q
    |||||||||| |||||||||||||||||||||||    
T  11376549 agaatttcttgtaaactttcatatcttagaaatt 11376516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 736
Target Start/End: Complemental strand, 20052834 - 20052742
Alignment:
Q  644 ttgagcaacttgtaatcaacgagattatagtagaaatccctctgaagtgcaatgga-ctggactactctcggtttgtagtaggaaccaatataa 736  Q
    |||||||| |||||||| | | ||||||||| |||||||||  ||||||||| ||| || ||||||||| | ||||| | ||||||||||||||    
T  20052834 ttgagcaagttgtaatctaagtgattatagt-gaaatccctaagaagtgcaagggaactagactactcttgttttgtgggaggaaccaatataa 20052742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 27707324 - 27707381
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaat 234  Q
    |||||| |||| | ||||| |||||||||||||||| || |||||||||||| |||||    
T  27707324 tttgtcctcttctgaccacatgtagaaacaaacaaagaacttcaaagacaaaaagaat 27707381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 279
Target Start/End: Original strand, 6685 - 6836
Alignment:
Q  129 tttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttaccacgtgtagaaacaaac-aaacaaattcaaagacaa 227  Q
    ||||||||||| |||||||||||||||||| ||||| | |||||    ||||||||||  | |||||||| | |||||||| ||| |||||||| || ||    
T  6685 tttgtcgtcttttgaaggaatgtcactatcagactcagggtagtagtgtttgtcttctactgaccacgtgcataaacaaacaaaaaaaattcaaggataa 6784  T
Q  228 agagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactac 279  Q
     ||||||| ||  |||||||| ||| |||| |||  ||||||||||||||||    
T  6785 ggagaatgtaacgaatcattccattagaagaaaagaaatttcgaatgactac 6836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0669 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 291
Target Start/End: Complemental strand, 4812 - 4695
Alignment:
Q  174 cattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaat 273  Q
    |||||||||||||| | |||||||| | ||||||||||  |||||||| ||||| ||||||| ||  |||||||||||  ||| |||| || ||||||||    
T  4812 cattttgtcttcttctgaccacgtgcataaacaaacaagaaaattcaaggacaatgagaatgtaacgaatcattctataagaatcaaaggattttcgaat 4713  T
Q  274 gactacacaacgacatta 291  Q
    |||||  |||||| ||||    
T  4712 gactattcaacgatatta 4695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 409 - 469
Target Start/End: Original strand, 34062610 - 34062670
Alignment:
Q  409 tcaaaattaataccgcacaaactcttaaagaatttcttataaactttcatatcttagaaat 469  Q
    ||||||| || | ||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  34062610 tcaaaatcaaaagcgcacaaacacttaaagaatttcttataaactttcatatcttaaaaat 34062670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 10329699 - 10329786
Alignment:
Q  174 cattttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaa 261  Q
    |||||| ||||||  | |||||||| | ||||||||||  |||||||| ||||||||||||| |||| ||||||||||| ||||||||    
T  10329699 cattttttcttctactgaccacgtgcataaacaaacaagaaaattcaaggacaaagagaatgtaatatatcattctattagaagcaaa 10329786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 5345866 - 5345764
Alignment:
Q  93 tgaaggtgacgtcataagctgaagaatctaaactagtttgtcgtcttctgaaggaatgtcactatctgactccgagtagtgcattttgtcttctttttac 192  Q
    |||| ||||||||| |||||||||| |||||   |||||||||||||||||| |||||||||||    |||| ||||||| || ||||||||||| | ||    
T  5345866 tgaatgtgacgtcagaagctgaagactctaactcagtttgtcgtcttctgaa-gaatgtcactactaaactcagagtagtacaatttgtcttcttctgac 5345768  T
Q  193 cacg 196  Q
    ||||    
T  5345767 cacg 5345764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 15598463 - 15598429
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||||||||||    
T  15598463 agaatttcttataaactttcatatcttagaaattc 15598429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 17687690 - 17687656
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||||||||||    
T  17687690 agaatttcttataaactttcatatcttagaaattc 17687656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 25724668 - 25724725
Alignment:
Q  178 ttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatg 235  Q
    |||||||||| | |||||||||||| ||||||||| || ||||| |||||||||||||    
T  25724668 ttgtcttcttataaccacgtgtagatacaaacaaagaatttcaaggacaaagagaatg 25724725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 439 - 471
Target Start/End: Complemental strand, 24635025 - 24634993
Alignment:
Q  439 aatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||||||||    
T  24635025 aatttcttataaactttcatatcttagaaattc 24634993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 300
Target Start/End: Complemental strand, 30214295 - 30214212
Alignment:
Q  217 ttcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgactacacaacgacattaaccttttga 300  Q
    ||||| || |||||||||| || | |||||||||||  || |||| || |||||||||||||| ||||||||||| || |||||    
T  30214295 ttcaaggataaagagaatgtaacagatcattctattaaaaacaaaagattttcgaatgactactcaacgacattatccatttga 30214212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 34062336 - 34062434
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaataaatcattctatttgaagcaaatgaatttcgaatgac 276  Q
    ||||||||||| | |||||||| ||||||||||||| || ||||||| ||    ||||| || |||| ||||| |||||||||||| |||||| ||||||    
T  34062336 tttgtcttcttgtgaccacgtgcagaaacaaacaaagaacttcaaaggcagttggaatgaaacaaataattct-tttgaagcaaataaatttcaaatgac 34062434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 1210182 - 1210216
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||| ||||||||||    
T  1210182 agaatttcttataaactttcatatattagaaattc 1210216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 23520977 - 23521035
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatg 235  Q
    |||||| |||||| |||||||||| ||||| ||||| || ||||| |||||||||||||    
T  23520977 tttgtcatcttttgaccacgtgtaaaaacagacaaaaaacttcaaggacaaagagaatg 23521035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 23584916 - 23584974
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatg 235  Q
    |||||||| || | |||||||||| ||||||||||| || ||||| |||||||||||||    
T  23584916 tttgtcttattctgaccacgtgtataaacaaacaaagaacttcaaggacaaagagaatg 23584974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 24277194 - 24277248
Alignment:
Q  181 tcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatg 235  Q
    ||||||| | ||||||||||||| |||||||| || ||||| |||||||||||||    
T  24277194 tcttcttctaaccacgtgtagaagcaaacaaataacttcaaggacaaagagaatg 24277248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 17678 - 17644
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||||||||||    
T  17678 agaatttcttataaactttcatatcttagaaattc 17644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 2218 - 2252
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||||||||||    
T  2218 agaatttcttataaactttcatatcttagaaattc 2252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 84730 - 84774
Alignment:
Q  33 gatatcgatgcatattgcttcatcgtagcctattgtaaatcggtg 77  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||||    
T  84730 gatatggatgcctattgctttatcgtagcctattgtaaatcggtg 84774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0859 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 2700 - 2666
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  2700 agaatttcttatcaactttcatatcttagaaattc 2666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 9687 - 9653
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  9687 agaatttcttatcaactttcatatcttagaaattc 9653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 9421 - 9455
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||||||||||||||||||| ||||||    
T  9421 agaatttcttataaactttcatatcttacaaattc 9455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 19792 - 19758
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  19792 agaatttcttatcaactttcatatcttagaaattc 19758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 27823 - 27857
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  27823 agaatttcttatcaactttcatatcttagaaattc 27857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 103290 - 103256
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  103290 agaatttcttatcaactttcatatcttagaaattc 103256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 90449 - 90483
Alignment:
Q  437 agaatttcttataaactttcatatcttagaaattc 471  Q
    |||||||||||| ||||||||||||||||||||||    
T  90449 agaatttcttatcaactttcatatcttagaaattc 90483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 16824 - 16885
Alignment:
Q  177 tttgtcttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaagagaatgcaa 238  Q
    ||||||||||||| || || |||||||||||||||| || ||||||   |||||||||||||    
T  16824 tttgtcttcttttgactacatgtagaaacaaacaaaaaacttcaaaataaaagagaatgcaa 16885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University