View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11612_low_3 (Length: 718)
Name: NF11612_low_3
Description: NF11612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11612_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 21 - 574
Target Start/End: Original strand, 13924796 - 13925349
Alignment:
| Q |
21 |
taataaggcaaaaatagctttctataagattccttctccaaatcaagagaaacaatgacataatctgaatcataacgtgtcagccaattaacagatccgc |
120 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13924796 |
taataaggcatcaatagctttctgtaagattccttctccaaatcaagaggaacaatgacataatctgaaccataacgtgtcagccaattaacagatccgc |
13924895 |
T |
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| Q |
121 |
atacaaacttacctgattcatcaatagggacaccataagggacatctggaatccttctccatgtcttagcaccgacagtatgaaccttcaccttaacttt |
220 |
Q |
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| T |
13924896 |
atacaaactttcctgattcatcaacagggacaccataagggaaatctggaatccttctccatgtcttagtaccgacagtatgaaccttcaccttaacttt |
13924995 |
T |
|
| Q |
221 |
gaaaaccttgccatccaaactgccactactatagccagaaaaggaaacaaccttaaaagcaccactgaaataatcatagccaaagccatatgttacgtga |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13924996 |
gaaaaccttgccatccaaactgccactactatagccagaaaaggcaacaacctgaaaagcaccactgaaataatcatagccaaagccatatgttacgtga |
13925095 |
T |
|
| Q |
321 |
gctcgcagtcggtgtggatcatccaaagaggaaggcaactcggaaaattttcttatggaagggttccacaatagagtgaaacctcgatccaggtcgaaac |
420 |
Q |
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| T |
13925096 |
gctcgcagtcggtgtggttcatccaaagaggaaggcaactcggaaaattttcttatggaagggttccacaatagagtgaaacctcgatccaggtcgaaac |
13925195 |
T |
|
| Q |
421 |
atatgattccgtggcaagacccaacaatgagatcaaggttttgtttgttcgaagggtattgtgtggcaatggcagtagggcttacttctgtaaagacgga |
520 |
Q |
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| T |
13925196 |
atatgattatatggcaagacccaacaatgagatcaaggttttgtttgttcgaagggtattgtgtggcaatggcagtaggggttacttctgtaaagacgga |
13925295 |
T |
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| Q |
521 |
agagagagggtaggttgtgtggaagaactcgtcaagcgagggattaaataaggt |
574 |
Q |
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| T |
13925296 |
agagaaagggtaggttgtgtggaagaactcgtcaagcgagggattaaataaggt |
13925349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 570 - 710
Target Start/End: Original strand, 13944089 - 13944229
Alignment:
| Q |
570 |
aaggtaaatgataatgtatgtaagaacatcagctataaatttgaaaaaggaagacacacaatgcacacaagaaaaagtgaataatgacaacgagcactga |
669 |
Q |
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| T |
13944089 |
aaggtaaatgataatgtatgtaagaacatcagctataaatttgaaaaaggaagacacacaatgcacaaaagaaaaagtgaataatgacaacgagcactga |
13944188 |
T |
|
| Q |
670 |
tatatctcataacactcccaaaattatagtgccttcatctc |
710 |
Q |
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| T |
13944189 |
tatatctcataacactcccaaaattatagtgccttcatctc |
13944229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 570 - 710
Target Start/End: Original strand, 14085278 - 14085418
Alignment:
| Q |
570 |
aaggtaaatgataatgtatgtaagaacatcagctataaatttgaaaaaggaagacacacaatgcacacaagaaaaagtgaataatgacaacgagcactga |
669 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14085278 |
aaggtaaatgataatgtatgtaagaacatcagctataaatttgaaaaaggaagacacacaatgcacaaaagaaaaagtgaataatgacaacgagcactga |
14085377 |
T |
|
| Q |
670 |
tatatctcataacactcccaaaattatagtgccttcatctc |
710 |
Q |
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| T |
14085378 |
tatatctcataacactcccaaaattatagtgccttcatctc |
14085418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 7160903 - 7160946
Alignment:
| Q |
33 |
aatagctttctataagattccttctccaaatcaagagaaacaat |
76 |
Q |
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| T |
7160903 |
aatagctctcgataagactccttctccaaatcaagagaaacaat |
7160946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 79
Target Start/End: Complemental strand, 33038047 - 33038016
Alignment:
| Q |
48 |
gattccttctccaaatcaagagaaacaatgac |
79 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33038047 |
gattccttctccaaatcaagagaaacaatgac |
33038016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 33020206 - 33020177
Alignment:
| Q |
51 |
tccttctccaaatcaagagaaacaatgaca |
80 |
Q |
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| T |
33020206 |
tccttctccaaatcaagagaaacaatgaca |
33020177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 33026547 - 33026518
Alignment:
| Q |
51 |
tccttctccaaatcaagagaaacaatgaca |
80 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
33026547 |
tccttctccaaatcaagagaaacaatgaca |
33026518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 7430652 - 7430681
Alignment:
| Q |
51 |
tccttctccaaatcaagagaaacaatgaca |
80 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
7430652 |
tccttctccaaatcaagagaaacaatgaca |
7430681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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