View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11612_low_4 (Length: 622)
Name: NF11612_low_4
Description: NF11612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11612_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 40093228 - 40092880
Alignment:
| Q |
1 |
aaaaacaagaaaagctgaacctgaagtccaactgttaaactcagcagatcaattttattctttccagaaagaactgtgatcgggatgtcctcattaagct |
100 |
Q |
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| T |
40093228 |
aaaaacaagaaaagctgaacctgaagtccaactgttaaactcagcagatcaattttattctttccagaaagaactgtgatcgggatgtcctcattaagct |
40093129 |
T |
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| Q |
101 |
taggtttttctttgttcccggtttgactccctaagaattcatcaataatatcatagaaagttattatttaataattcaagaacttaattgaaacaataaa |
200 |
Q |
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| T |
40093128 |
taggtttttctttgttcccggtttgactccctaagaattcatcaataatatcatagaaagttattatttaataattcaagaacttaattgaaaaaataaa |
40093029 |
T |
|
| Q |
201 |
ttatgaacatttttaaaaggaacatccatcatcaactctccctccnnnnnnnnnnnnnnnnnnntcaacgatcaactcatgttttaacttgttttaaaat |
300 |
Q |
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| T |
40093028 |
ttatgaacatttttagaaggaacatccatcatcaactctccct-aaaaaaaataaaaaaaaaaatcaatgatcaactcatgttttaacttgttttaaaat |
40092930 |
T |
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| Q |
301 |
caacctcaacttcatttgagtttcaataacacagggtctttgagagtttc |
350 |
Q |
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| T |
40092929 |
caacctcgacttcatttgagtttcaataacacaggctctttgagactttc |
40092880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 347 - 608
Target Start/End: Complemental strand, 40088077 - 40087817
Alignment:
| Q |
347 |
tttcaaaatataaaaaccatatccttgtgaataaattacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggac |
446 |
Q |
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| T |
40088077 |
tttcaaaatataaaaaccatatccttgtgaataa-ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggac |
40087979 |
T |
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| Q |
447 |
agtttgagaaccaggatcatccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaatcatcagtcagggaaaatatcttt |
546 |
Q |
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| T |
40087978 |
agtttgagaaccaggatcatccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaatcatcagtcagggaaaatatcttt |
40087879 |
T |
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| Q |
547 |
caaatttggaggcttgtataccttaatgagtaccacaagtagtcacttctatcagctgtgat |
608 |
Q |
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| T |
40087878 |
caaatttggaggcttgtataccttaatgagtaccacaagtagtcacttctatcagctgtgat |
40087817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 270 - 608
Target Start/End: Complemental strand, 40062311 - 40061970
Alignment:
| Q |
270 |
gatcaactcatgtttt-aacttgttttaaaatcaacctcaacttcatttgagtttcaataacacagggtctttgagagtttcaaaatataaaaaccata- |
367 |
Q |
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| T |
40062311 |
gatcaactcatatttttaacttgttttaaaatcaaccttgacttcatttgagtttcaataatacaggctctttgagactttcaaaacattagaaccataa |
40062212 |
T |
|
| Q |
368 |
--tccttgtgaataaattacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttgagaaccaggatca |
465 |
Q |
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| T |
40062211 |
aattctagtgaataa-ttacctgcaagctttccgtttacgaaagcatgaagggcatggccgagtgattcaatgtgaagtacagtttgagaaccaagatca |
40062113 |
T |
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| Q |
466 |
tccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaatcatcagtcagggaaaatatctttcaaatttggaggcttgtat |
565 |
Q |
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| T |
40062112 |
tccttaagatcaacgcttcaaaagaatataatagaagtgttatcgagaagtacagaatcatcgttcagggaaaatatctttcaaatttggaggcttgtat |
40062013 |
T |
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| Q |
566 |
accttaatgagtaccacaagtagtcacttctatcagctgtgat |
608 |
Q |
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| T |
40062012 |
accttaatgagtaccacaagtagtcacttctatcagcggtgat |
40061970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 3 - 243
Target Start/End: Complemental strand, 40062569 - 40062329
Alignment:
| Q |
3 |
aaacaagaaaagctgaacctgaagtccaactgttaaactcagcagatcaattttattctttccagaaagaactgtgatcgggatgtcctcattaagctta |
102 |
Q |
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||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||| ||| ||| |||| ||||||||| ||||||||||| |
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| T |
40062569 |
aaacacgaaaatctgaacctgaagtccaactgttagactcagcagatcaatttggttatttccataaattactttgattgggatgtccacattaagctta |
40062470 |
T |
|
| Q |
103 |
ggtttttctttgttcccggtttgactccctaagaattcatcaataatatcatagaaagttattatttaataattcaagaacttaattgaaacaataaatt |
202 |
Q |
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| T |
40062469 |
ggtttgtctttgttcccggtgtgactccctaagaattcatcaataatatcatcgaaagttataatttaataattcaagaacttaatggaaacaataaatt |
40062370 |
T |
|
| Q |
203 |
atgaacatttttaaaaggaacatccatcatcaactctccct |
243 |
Q |
| |
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|||||||||||| | |||||||||| ||||||||||||| |
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| T |
40062369 |
atgaacatttttggacggaacatccaagatcaactctccct |
40062329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 382 - 606
Target Start/End: Complemental strand, 40080330 - 40080107
Alignment:
| Q |
382 |
ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttgagaaccaggatcatccttaagatcaacgc |
481 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||| |||||||| || |
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| T |
40080330 |
ttaccagcaagcttgccgtttatgaaagcatgaagggcatggccaagtgattcaatgtgcaggacagtttgagaaccgggatcatccgcaagatcaaggc |
40080231 |
T |
|
| Q |
482 |
ttcaaaagaatacaatagaagtgttatcgagaagtacagaatcatcagtcagggaaaatatctttcaaatttggaggcttgtataccttaatgagtacca |
581 |
Q |
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|| |||| ||||||| |||||||||||| ||||||||| ||||||| |||| | ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40080230 |
tttaaaa-aatacaagagaagtgttatcaagaagtacataatcatcggtcaaagcaaatatctttcaaatttggaggcttgtgtaccttaatgagtacca |
40080132 |
T |
|
| Q |
582 |
caagtagtcacttctatcagctgtg |
606 |
Q |
| |
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||| || |||||||||||||||||| |
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| T |
40080131 |
caaataatcacttctatcagctgtg |
40080107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 40080895 - 40080793
Alignment:
| Q |
1 |
aaaaacaagaaaagctgaacctgaagtccaactgttaaactcagcagatcaattttattctttccagaaagaactgtgatcgggatgtcctcattaagct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| | || ||| ||||||||| ||||||||| |
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| T |
40080895 |
aaaaacaagaaaagctgaacctgaagtccaactgttaaactcagtagatcaattttgttctttccggaaactagtgcgattgggatgtccacattaagct |
40080796 |
T |
|
| Q |
101 |
tag |
103 |
Q |
| |
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||| |
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| T |
40080795 |
tag |
40080793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 382 - 453
Target Start/End: Original strand, 22013454 - 22013525
Alignment:
| Q |
382 |
ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttga |
453 |
Q |
| |
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||||| |||||||| || |||| |||||||||||||||||||| || |||||||||||||| |||| |||| |
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| T |
22013454 |
ttaccagcaagcttcccatttacaaaagcatgaagggcatggccaagggattcaatgtgaagaacaggttga |
22013525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 563 - 602
Target Start/End: Original strand, 22013633 - 22013672
Alignment:
| Q |
563 |
tataccttaatgagtaccacaagtagtcacttctatcagc |
602 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| |
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| T |
22013633 |
tataccttaatgagtaccataagtagtcacttctatcagc |
22013672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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