View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11612_low_5 (Length: 518)
Name: NF11612_low_5
Description: NF11612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11612_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 19 - 510
Target Start/End: Original strand, 44433356 - 44433847
Alignment:
| Q |
19 |
ataacattactatttgctctataattttgatcacaactttagcacatatttgctctactattttctcatcagtttcacaataatcatttgtctattgtgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44433356 |
ataacattactatttgctctataattttgatcacaactttagcacatatttgctctactattttctcatcagtttcacgataatcatttgtctattgtgt |
44433455 |
T |
|
| Q |
119 |
tgaaatctgctatcttgtaggagcttagggaacaagatagaagtgtcgcatgaagcgagaaggcgagctgcttcattaccaattttacagtgtcacggaa |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44433456 |
tgaaatctgctatcttctaggagcttagggaacaagatagaagtgtcacatgaagcgagaaggcgagctgcttcattaccaattttacagtgtcacggaa |
44433555 |
T |
|
| Q |
219 |
tcagtacgcatctataaatcttatatgctgatataactaggtcgagcattttcaatctcaactgtctgatctcaaattaacagtcgagattgctttaact |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44433556 |
tcagtacgcatctataaatcttatatgctgatataactaggtcgagcattttcaatctcaactgtctgatctcaaattaacagtcgagattgctttaact |
44433655 |
T |
|
| Q |
319 |
gattttgttattctgtaatctaaaccgtacaatctcatattaacggtcaatatcgtttacagcataaaaacacatgtttttatcgctgcatgaaatctgg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44433656 |
gattttgttattctgtaatctaaaccgtacaatctcatattaacggtcaatatcgtttacagcgtaaaaacacatgtttttatcactgcatgaaatctgg |
44433755 |
T |
|
| Q |
419 |
attctgttcacatatgtaacactaacttttactgcattagattctagcagtcacaaattttttatagcatatttggaatggttccctttgct |
510 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44433756 |
attctgttcacagatgtaacactaacttttactgcattagattctagcagtcacaaattttttatagcatatttggaacggttccctttgct |
44433847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 25552081 - 25552137
Alignment:
| Q |
268 |
tttcaatctcaactgtctgatctcaaattaacagtcgagattgctttaactgatttt |
324 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||| | || |||||||||| |
|
|
| T |
25552081 |
tttcaatctcaaccgtccgatctcaaattaacagtcgagatagtttaaactgatttt |
25552137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 287 - 365
Target Start/End: Complemental strand, 23713535 - 23713456
Alignment:
| Q |
287 |
atctcaaattaacagtcgagattgctttaa-ctgattttgttattctgtaatctaaaccgtacaatctcatattaacggt |
365 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||||||||||||| |||||||| ||| || |||||||| ||||||||| |
|
|
| T |
23713535 |
atctcaagttaacagtcgagatctttttaaactgattttgttattgtgtaatctgaactgtccaatctcagattaacggt |
23713456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 2716629 - 2716559
Alignment:
| Q |
134 |
tgtaggagcttagggaacaagatagaagtgtcgcatgaagcgagaaggcgagctgcttcattaccaatttt |
204 |
Q |
| |
|
|||||||||||| || |||||||||| | || |||||||| |||||| ||||||||||||||||| |||| |
|
|
| T |
2716629 |
tgtaggagcttaaagagcaagatagaattatcacatgaagcaagaaggagagctgcttcattaccagtttt |
2716559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 33554262 - 33554311
Alignment:
| Q |
267 |
ttttcaatctcaactgtctgatctcaaattaacagtcgagattgctttaa |
316 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| ||||||| ||||| |
|
|
| T |
33554262 |
ttttcgatctcaactgtccgatctcaaattaacagttgagattgttttaa |
33554311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 310
Target Start/End: Original strand, 30000653 - 30000687
Alignment:
| Q |
276 |
tcaactgtctgatctcaaattaacagtcgagattg |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
30000653 |
tcaactgtctgatctcaaattaacggtcgagattg |
30000687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 3356761 - 3356701
Alignment:
| Q |
134 |
tgtaggagcttagggaacaagatagaagtgtcgcatgaagcgagaaggcgagctgcttcattac |
197 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||| |||||||| |||| ||||||||||||||| |
|
|
| T |
3356761 |
tgtaggagcttaaggagcaagatagaattgtcacatgaagc---aaggagagctgcttcattac |
3356701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University