View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11612_low_6 (Length: 439)
Name: NF11612_low_6
Description: NF11612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11612_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 224 - 429
Target Start/End: Complemental strand, 22201704 - 22201498
Alignment:
| Q |
224 |
caagggaacagttagctactatacatttatgttaaagtggtgagctttcttcctgctgttccctagttatgtaggcttcaatatgaaaaatatgatgtgt |
323 |
Q |
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| T |
22201704 |
caagggaacagttagctactatacatttatgttaaagtggtgagctttcttcctgctgttccctagttatgtaggcttcaatatgaaaaatatgatatgt |
22201605 |
T |
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| Q |
324 |
ctctctcaactcaaccatctagaatctagctttgtccagtgctatgagtactttgctggattgagattt-aaatgtagtggaccattagtttaattcttc |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
22201604 |
ctctctcaactcaaccatctagaatctagctttgtccagtgctataagtactttgctggattgagatttaaaatgtagtggaccattagtttaattctcc |
22201505 |
T |
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| Q |
423 |
ccctatg |
429 |
Q |
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||||||| |
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| T |
22201504 |
ccctatg |
22201498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 22202604 - 22202467
Alignment:
| Q |
27 |
gtgtggcatattaatttagtgaccatgttttctgtctctaaaaaatatttcttctttcactaatctcctacagtgaggtaaatataatttcctcttggac |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
22202604 |
gtgtggcatattaatttagtgaccatgttttctgtctctaaaaaatagttcttctttcactaatctcctagagtgtggtaaatataatttcctcttggac |
22202505 |
T |
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| Q |
127 |
caagcataatccccttatgttaaattttttcttataac |
164 |
Q |
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| T |
22202504 |
caagcataatccccttatcttaaattttttcttataac |
22202467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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