View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11612_low_7 (Length: 392)
Name: NF11612_low_7
Description: NF11612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11612_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 49589026 - 49588661
Alignment:
| Q |
19 |
ggcatgtcaaattgttttgttgtaggatgggtattcaaaagagtcgctatatttattttaagaggaaagagtcgctgtatttaaaataggaaaatgcagc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49589026 |
ggcatgtcaaattgttttgttgtaggatgggtattcaaaagagtcgctatattttttttaagaggaaagagtcactgtatttaaaataggaaaatgcagc |
49588927 |
T |
|
| Q |
119 |
tgatagcttcctgtcactaagttggactatatactcctcttatttcaataatactttcacatatcgcccttcgtacaccttaattttaattaaacttcta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49588926 |
tgatagcttcctgtcactaagttggactatatactcctcttatttcaataatactttcacatttcgcccttcgtacaccttaattttaattaaacttcta |
49588827 |
T |
|
| Q |
219 |
tcgctttttcttggtcgattatatactcctcttatttcaattataacatgattttccactttttaaaacataaacttttgacttacactcgtcagactaa |
318 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49588826 |
tcgctttttcttgatcgattatatactcctcttatttcaattataacgtgattttccactttttaaaacataaacttttgacttacactcgtcaaactaa |
49588727 |
T |
|
| Q |
319 |
tgattgcctcgcccggttaaaagcttgatcggcattttcttagcttctttagctgggcttcatctc |
384 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
49588726 |
tgattgcctcgcccggttaaaagcttgatctgcattttcttagcttctttagctgggcttcttctc |
49588661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 8048080 - 8048120
Alignment:
| Q |
223 |
tttttcttggtcgattatatactcctcttatttcaattata |
263 |
Q |
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|||| |||| ||||||||||||||||||||||| ||||||| |
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| T |
8048080 |
ttttccttgatcgattatatactcctcttattttaattata |
8048120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 261
Target Start/End: Complemental strand, 3854981 - 3854948
Alignment:
| Q |
228 |
cttggtcgattatatactcctcttatttcaatta |
261 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
3854981 |
cttggttgattatatactcctcttatttcaatta |
3854948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 27751038 - 27751083
Alignment:
| Q |
145 |
ctatatactcctcttatttcaataatactttcacatatcgcccttc |
190 |
Q |
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||||| ||||||||||||||||| |||| ||||| ||||||||||| |
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| T |
27751038 |
ctataaactcctcttatttcaattatacattcacctatcgcccttc |
27751083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 18997700 - 18997668
Alignment:
| Q |
233 |
tcgattatatactcctcttatttcaattataac |
265 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |
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| T |
18997700 |
tcgattatatactccttttatttcaattataac |
18997668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 263
Target Start/End: Complemental strand, 55576188 - 55576160
Alignment:
| Q |
235 |
gattatatactcctcttatttcaattata |
263 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
55576188 |
gattatatactcctcttatttcaattata |
55576160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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