View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11613_high_13 (Length: 273)

Name: NF11613_high_13
Description: NF11613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11613_high_13
NF11613_high_13
[»] chr8 (2 HSPs)
chr8 (126-258)||(20814756-20814888)
chr8 (11-62)||(20814952-20815003)
[»] scaffold0069 (2 HSPs)
scaffold0069 (128-258)||(26533-26663)
scaffold0069 (16-56)||(26327-26368)
[»] scaffold0406 (1 HSPs)
scaffold0406 (126-258)||(7772-7904)
[»] chr6 (3 HSPs)
chr6 (126-258)||(21814420-21814552)
chr6 (126-258)||(22283999-22284131)
chr6 (11-62)||(21814305-21814356)
[»] scaffold0012 (4 HSPs)
scaffold0012 (126-258)||(115751-115883)
scaffold0012 (126-258)||(107934-108066)
scaffold0012 (16-56)||(115642-115682)
scaffold0012 (16-57)||(107836-107877)
[»] scaffold0006 (9 HSPs)
scaffold0006 (126-258)||(109902-110034)
scaffold0006 (126-258)||(218742-218874)
scaffold0006 (128-258)||(168153-168283)
scaffold0006 (126-258)||(56967-57099)
scaffold0006 (127-258)||(144895-145026)
scaffold0006 (126-258)||(139822-139954)
scaffold0006 (16-56)||(168045-168085)
scaffold0006 (13-56)||(144800-144843)
scaffold0006 (16-64)||(139725-139773)
[»] chr1 (23 HSPs)
chr1 (126-258)||(13650061-13650193)
chr1 (126-258)||(20477505-20477637)
chr1 (126-258)||(13543377-13543509)
chr1 (126-258)||(20368433-20368565)
chr1 (128-258)||(13670539-13670669)
chr1 (126-258)||(15899147-15899279)
chr1 (126-258)||(19138253-19138385)
chr1 (127-258)||(13655134-13655265)
chr1 (126-258)||(13420879-13421011)
chr1 (126-258)||(13610339-13610471)
chr1 (126-258)||(13506271-13506403)
chr1 (126-258)||(13684783-13684915)
chr1 (126-258)||(16497093-16497225)
chr1 (126-258)||(16468450-16468582)
chr1 (16-56)||(13670431-13670471)
chr1 (16-56)||(20368324-20368364)
chr1 (16-56)||(20477396-20477436)
chr1 (13-56)||(13655039-13655082)
chr1 (16-50)||(15899338-15899372)
chr1 (16-64)||(13506174-13506222)
chr1 (16-64)||(13610242-13610290)
chr1 (16-64)||(19138442-19138490)
chr1 (17-64)||(13684687-13684734)
[»] chr2 (1 HSPs)
chr2 (126-258)||(38057792-38057924)
[»] scaffold0068 (1 HSPs)
scaffold0068 (127-258)||(40939-41070)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 20814888 - 20814756
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    |||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20814888 cataggttaattttttgaaattagagaaaatcatactgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 20814789  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||||||||||||||||||||    
T  20814788 agtgaacaattgtaagaaaattgtggtggtttt 20814756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 20815003 - 20814952
Alignment:
Q  11 cagagagaaataatgcagtaaaagaggtatggtaattctattattggagcat 62  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  20815003 cagagagaaataatgcaggaaaaaaggtatggtaattctattattggagcat 20814952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 128 - 258
Target Start/End: Original strand, 26533 - 26663
Alignment:
Q  128 taggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttggaag 227  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26533 taggttcattttttgaaattagagaaaatcatattgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttggaag 26632  T
Q  228 tgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||||||||||||||||||    
T  26633 tgaacaattgtaagaaaattgtggtggtttt 26663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 26327 - 26368
Alignment:
Q  16 agaaataatgcagtaaaagaggtat-ggtaattctattattg 56  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  26327 agaaataatgcagtaaaagaggtatgggtaattctattattg 26368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 7904 - 7772
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7904 cataggttcattttttgaaattagagaaaatcatactgaaggatatggacaacttgaagacaatatggcatcaccaatttgaaacatcgaagatgttgga 7805  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||||||||||||||||||||    
T  7804 agtgaacaattgtaagaaaattgtggtggtttt 7772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 21814420 - 21814552
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    |||||||| |||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21814420 cataggttaattttttgaaattagagaaaatcatactgaaggatatggccagcttgaagacaatatggcattaccaatttgaaacatcgaaggtgttgga 21814519  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||||||||||||||||||||    
T  21814520 agtgaacaattgtaagaaaattgtggtggtttt 21814552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 22284131 - 22283999
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||||||||| |||||||||||||||||||  ||||||| |||||| ||||||||||||    
T  22284131 cataggttcattttttgaaattagagaaaatcttactgaaggatatggacaacttgaagacaatatggcatccccaatttaaaacattgaagatgttgga 22284032  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    ||||||||||||||||||||||||||| |||||    
T  22284031 agtgaacaattgtaagaaaattgtggttgtttt 22283999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 21814305 - 21814356
Alignment:
Q  11 cagagagaaataatgcagtaaaagaggtatggtaattctattattggagcat 62  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21814305 cagagagaaataatgcagtaaaataggtatggtaattctattattggagcat 21814356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 109; Significance: 7e-55; HSPs: 4)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 115751 - 115883
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    ||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  115751 cataggttcattttttgaaattagagaaaatcatattgaaggatatggacagcttgaagacaatatggcatcggcaatttgaaacatcgaagatgttgga 115850  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||||||||||||||||||||    
T  115851 agtgaacaattgtaagaaaattgtggtggtttt 115883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 107934 - 108066
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    ||||||||||||||||||||||||| ||||||||||  ||||||||| ||| ||||||| ||||||||||  |||||||||||| || ||||||||||||    
T  107934 cataggttcattttttgaaattagagaaaatcatactcaaggatatgtacaacttgaagtcaatatggcaccaccaatttgaaaaattgaagatgttgga 108033  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||| ||||||||||||||||||    
T  108034 agtgaacaattgtacgaaaattgtggtggtttt 108066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 115642 - 115682
Alignment:
Q  16 agaaataatgcagtaaaagaggtatggtaattctattattg 56  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  115642 agaaataatgcagtaaaagaggtatggtaattctattattg 115682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 107836 - 107877
Alignment:
Q  16 agaaataatgcagtaaaagaggtatggtaattctattattgg 57  Q
    ||||| |||||| ||||||||||||| |||||||||||||||    
T  107836 agaaaaaatgcaataaaagaggtatgataattctattattgg 107877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 109; Significance: 7e-55; HSPs: 9)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 109902 - 110034
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    ||||||||||||||||||||||||| |||||||||   ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  109902 cataggttcattttttgaaattagagaaaatcatatttaaggatatggacatcttgaagacaatatggcatcaccaatttgaaacatcgaagatgttgga 110001  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||||||||||||||||||||    
T  110002 agtgaacaattgtaagaaaattgtggtggtttt 110034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 218742 - 218874
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    ||||||||||||||||||||||||| ||||| |||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  218742 cataggttcattttttgaaattagagaaaattatattgaaggatatggacagcttgaagacaatatggcatcaccaatttgaaacatcgaagatgttgga 218841  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    || |||||||||||| |||||||||||||||||    
T  218842 agcgaacaattgtaacaaaattgtggtggtttt 218874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 128 - 258
Target Start/End: Original strand, 168153 - 168283
Alignment:
Q  128 taggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttggaag 227  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||    
T  168153 taggttcattttttgaaattagagaaaatcatattgaaggatatggacagcttgaagacaatatggcatcagcaatttgaaacatcgaagatgttgaaag 168252  T
Q  228 tgaacaattgtaagaaaattgtggtggtttt 258  Q
    ||||||||||||||||||||||||| |||||    
T  168253 tgaacaattgtaagaaaattgtggttgtttt 168283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 56967 - 57099
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| |||||||||||  ||||||| ||||||| ||| |||||||    
T  56967 cataggttcattttttgaaattagagaaaatcatactgaaggatatggacaacttgaagtcaatatggcatcgccaatttaaaacatcaaagctgttgga 57066  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||||||||||||||||||||    
T  57067 agtgaacaattgtaagaaaattgtggtggtttt 57099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 127 - 258
Target Start/End: Original strand, 144895 - 145026
Alignment:
Q  127 ataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttggaa 226  Q
    |||||||||||| ||||||||||| ||||| |||| |||||||||||||| ||||||| ||||||||||  ||||||||||||||| |||||||||||||    
T  144895 ataggttcatttattgaaattagagaaaattatactgaaggatatggacaacttgaagtcaatatggcaccaccaatttgaaacattgaagatgttggaa 144994  T
Q  227 gtgaacaattgtaagaaaattgtggtggtttt 258  Q
    ||||||||||||||||||||||||||||||||    
T  144995 gtgaacaattgtaagaaaattgtggtggtttt 145026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 139822 - 139954
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    ||||||||| | |||| || |||||||||||||||  |||||||||| ||| |||||||||||||||||||   ||||||||||||||||||||||||||    
T  139822 cataggttcgtcttttaaatttagaaaaaatcatattgaaggatatgaacaacttgaagacaatatggcatcggcaatttgaaacatcgaagatgttgga 139921  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||||||||||||||||||||    
T  139922 agtgaacaattgtaagaaaattgtggtggtttt 139954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 168045 - 168085
Alignment:
Q  16 agaaataatgcagtaaaagaggtatggtaattctattattg 56  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  168045 agaaataatgcagtaaaagaggtatggtaattctattattg 168085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 144800 - 144843
Alignment:
Q  13 gagagaaataatgcagtaaaagaggtatggtaattctattattg 56  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||    
T  144800 gagagaaataatgcattaaaagaggtatggtaattctgttattg 144843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 139725 - 139773
Alignment:
Q  16 agaaataatgcagtaaaagaggtatggtaattctattattggagcatcc 64  Q
    ||||| |||||| | ||||||||||| ||||||||||||||||||||||    
T  139725 agaaacaatgcactgaaagaggtatgctaattctattattggagcatcc 139773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 13650061 - 13650193
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    ||||||||| |||||| || |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13650061 cataggttcgttttttaaatttagaaaaaatcatattgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatccaagatgttgga 13650160  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||||||||||||||||||||    
T  13650161 agtgaacaattgtaagaaaattgtggtggtttt 13650193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 20477505 - 20477637
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    ||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  20477505 cataggttcattttttgaaattagagaaaatcatattgaaggatatggacagcttgaagacaatatggcatcggcaatttgaaacatcgaagatgttgga 20477604  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||||||||||||||||||||    
T  20477605 agtgaacaattgtaagaaaattgtggtggtttt 20477637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 13543377 - 13543509
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    |||||||||| |||||||||||||| |||||||||  |||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||    
T  13543377 cataggttcaatttttgaaattagagaaaatcatattgaaggatatggacaacttgaagacaatatggcatcaccaatttgaaacatcaaagatgttgga 13543476  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||||||||||||||||||||    
T  13543477 agtgaacaattgtaagaaaattgtggtggtttt 13543509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 20368433 - 20368565
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    ||||||||||||||||||||||||| ||||| |||  ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  20368433 cataggttcattttttgaaattagagaaaatgatattgaaggatatggacagcttgaagacaatatggcatcggcaatttgaaacatcgaagatgttgga 20368532  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||||||||||||||||||||    
T  20368533 agtgaacaattgtaagaaaattgtggtggtttt 20368565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 128 - 258
Target Start/End: Original strand, 13670539 - 13670669
Alignment:
Q  128 taggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttggaag 227  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||    
T  13670539 taggttcattttttgaaattagagaaaatcatattgaaggatatggacagcttgaagacaatatggcatcagcaatttgaaacatcgaagatgttgaaag 13670638  T
Q  228 tgaacaattgtaagaaaattgtggtggtttt 258  Q
    ||||||||||||||||||||||||| |||||    
T  13670639 tgaacaattgtaagaaaattgtggttgtttt 13670669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 15899279 - 15899147
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    ||||||||||||| ||||||||||| |||||||||  |||||||||||||| |||||||||| |||||||| |||||||| |||||| ||||||||||||    
T  15899279 cataggttcatttcttgaaattagagaaaatcatattgaaggatatggacaacttgaagacagtatggcatcaccaatttaaaacattgaagatgttgga 15899180  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||||||||||||||||||||    
T  15899179 agtgaacaattgtaagaaaattgtggtggtttt 15899147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 19138385 - 19138253
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    ||||||||| |||||| || |||||||||||||||  |||||||||||||| |||||||||||||||||||  ||||||||||||||||||| |||||||    
T  19138385 cataggttcgttttttaaatttagaaaaaatcatattgaaggatatggacaacttgaagacaatatggcatcgccaatttgaaacatcgaagctgttgga 19138286  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||||||||||||||||||||    
T  19138285 agtgaacaattgtaagaaaattgtggtggtttt 19138253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 127 - 258
Target Start/End: Original strand, 13655134 - 13655265
Alignment:
Q  127 ataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttggaa 226  Q
    |||||||||||| ||||||||||| ||||| |||| |||||||||||||| ||||||| ||||||||||  ||||||||||||||| |||||||||||||    
T  13655134 ataggttcatttattgaaattagagaaaattatactgaaggatatggacaacttgaagtcaatatggcaccaccaatttgaaacattgaagatgttggaa 13655233  T
Q  227 gtgaacaattgtaagaaaattgtggtggtttt 258  Q
    ||||||||||||||||||||||||||||||||    
T  13655234 gtgaacaattgtaagaaaattgtggtggtttt 13655265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 13420879 - 13421011
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    ||||||||||| |||| |||||||| |||||||||  |||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  13420879 cataggttcatcttttaaaattagagaaaatcatattgaaggatatggacaacttgaagacaatatggcatcaccaatttgaaacattgaagatgttgga 13420978  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    ||||||||||||||||||||| || ||||||||    
T  13420979 agtgaacaattgtaagaaaatagttgtggtttt 13421011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 13610339 - 13610471
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    ||||||||| | |||| || |||||||||||||||  |||||||||| ||| |||||||||||||||||||  |||||||||||||||||||||||||||    
T  13610339 cataggttcgtcttttaaatttagaaaaaatcatattgaaggatatgaacaacttgaagacaatatggcatcgccaatttgaaacatcgaagatgttgga 13610438  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||||||||||||||||||||    
T  13610439 agtgaacaattgtaagaaaattgtggtggtttt 13610471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 13506271 - 13506403
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    ||||||||| | |||| || |||||||||||||||  |||||||||| ||| |||||||||||||||||||   ||||||||||||||||||||||||||    
T  13506271 cataggttcgtcttttaaatttagaaaaaatcatattgaaggatatgaacaacttgaagacaatatggcatcgtcaatttgaaacatcgaagatgttgga 13506370  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||||||||||||||||||||    
T  13506371 agtgaacaattgtaagaaaattgtggtggtttt 13506403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 13684783 - 13684915
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    ||||||||| | |||| || |||||||||||||||  |||||||||| ||| |||||||||||||||||||  ||||||||||| || ||||||||||||    
T  13684783 cataggttcgtcttttaaatttagaaaaaatcatattgaaggatatgaacaacttgaagacaatatggcatcgccaatttgaaatattgaagatgttgga 13684882  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||||||||||||||||||||    
T  13684883 agtgaacaattgtaagaaaattgtggtggtttt 13684915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 16497225 - 16497093
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    |||||| ||||||||| ||||| || |||||||||  |||||| ||||||| |||||||||||||||| |  | |||||||||| ||||||||| |||||    
T  16497225 cataggatcattttttcaaattggagaaaatcatattgaaggacatggacaacttgaagacaatatggtaccatcaatttgaaatatcgaagatattgga 16497126  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||| ||||||||||||||||    
T  16497125 agtgaacaattgtaagcaaattgtggtggtttt 16497093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 16468582 - 16468450
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    |||||| | ||||||| ||||| || |||||||||| |||||| ||||| | |||||||||||| ||| |    ||||||||||||  ||||||||||||    
T  16468582 cataggataattttttcaaattggagaaaatcatactgaaggacatggataacttgaagacaatttggtaccgtcaatttgaaacagtgaagatgttgga 16468483  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||||||| ||||||||||||||||    
T  16468482 agtgaacaattgtaagcaaattgtggtggtttt 16468450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 13670431 - 13670471
Alignment:
Q  16 agaaataatgcagtaaaagaggtatggtaattctattattg 56  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13670431 agaaataatgcagtaaaagaggtatggtaattctattattg 13670471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 20368324 - 20368364
Alignment:
Q  16 agaaataatgcagtaaaagaggtatggtaattctattattg 56  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20368324 agaaataatgcagtaaaagaggtatggtaattctattattg 20368364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 20477396 - 20477436
Alignment:
Q  16 agaaataatgcagtaaaagaggtatggtaattctattattg 56  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20477396 agaaataatgcagtaaaagaggtatggtaattctattattg 20477436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 13655039 - 13655082
Alignment:
Q  13 gagagaaataatgcagtaaaagaggtatggtaattctattattg 56  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||    
T  13655039 gagagaaataatgcattaaaagaggtatggtaattctgttattg 13655082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 15899372 - 15899338
Alignment:
Q  16 agaaataatgcagtaaaagaggtatggtaattcta 50  Q
    |||||||||||||||||||||||||||||||||||    
T  15899372 agaaataatgcagtaaaagaggtatggtaattcta 15899338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 13506174 - 13506222
Alignment:
Q  16 agaaataatgcagtaaaagaggtatggtaattctattattggagcatcc 64  Q
    ||||| |||||| | ||||||||||| ||||||||||||||||||||||    
T  13506174 agaaacaatgcactgaaagaggtatgctaattctattattggagcatcc 13506222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 13610242 - 13610290
Alignment:
Q  16 agaaataatgcagtaaaagaggtatggtaattctattattggagcatcc 64  Q
    ||||| |||||| | ||||||||||| ||||||||||||||||||||||    
T  13610242 agaaacaatgcactgaaagaggtatgctaattctattattggagcatcc 13610290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 19138490 - 19138442
Alignment:
Q  16 agaaataatgcagtaaaagaggtatggtaattctattattggagcatcc 64  Q
    ||||| |||||| | ||||||||||| ||||||||||||||||||||||    
T  19138490 agaaacaatgcactgaaagaggtatgctaattctattattggagcatcc 19138442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 13684687 - 13684734
Alignment:
Q  17 gaaataatgcagtaaaagaggtatggtaattctattattggagcatcc 64  Q
    |||| |||||| | ||||||||||| ||||||||||||||||||||||    
T  13684687 gaaacaatgcactgaaagaggtatgctaattctattattggagcatcc 13684734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 38057924 - 38057792
Alignment:
Q  126 cataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttgga 225  Q
    |||||| ||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |    
T  38057924 cataggatcattttttgaaattagaaaaaatcatattgaaggatatggacaacttgaagacaatatggcattaccaatttaaaacattgaagatgttgca 38057825  T
Q  226 agtgaacaattgtaagaaaattgtggtggtttt 258  Q
    |||||||||||| ||||||||||||||||||||    
T  38057824 agtgaacaattgcaagaaaattgtggtggtttt 38057792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 127 - 258
Target Start/End: Complemental strand, 41070 - 40939
Alignment:
Q  127 ataggttcattttttgaaattagaaaaaatcataccgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttggaa 226  Q
    ||||||||| |||||||||||||| |||||||||| |||||||||| ||| ||||||||||||||||||| ||||||||||||||| |||||| ||||||    
T  41070 ataggttcaatttttgaaattagagaaaatcatactgaaggatatgaacaacttgaagacaatatggcatcaccaatttgaaacattgaagattttggaa 40971  T
Q  227 gtgaacaattgtaagaaaattgtggtggtttt 258  Q
    ||||||||||||||||||||||||||||||||    
T  40970 gtgaacaattgtaagaaaattgtggtggtttt 40939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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