View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11613_high_15 (Length: 248)

Name: NF11613_high_15
Description: NF11613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11613_high_15
NF11613_high_15
[»] chr1 (2 HSPs)
chr1 (18-111)||(47211919-47212012)
chr1 (111-204)||(47212051-47212140)
[»] chr5 (1 HSPs)
chr5 (18-87)||(749098-749167)


Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 47211919 - 47212012
Alignment:
Q  18 ctaaagaggtgaaacatccattcagaaatctcctcaagcgcaataaccgacctcaacttgtcatttccattgccctaatggtttgtactaatct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47211919 ctaaagaggtgaaacatccattcagaaatctcctcaagcgcaataaccgacctcaacttgtcatttccattgctctaatggtttgtactaatct 47212012  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 47212051 - 47212140
Alignment:
Q  111 tcatggttgcaatcgcttaacaattcttgttttatatatagagaattgtagtcaaatacgtttaaaagttaaaaccgccctaattggaatagcg 204  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47212051 tcatggttgcaatcgcttaacaattcttgttttata----gagaattgtagtcaaatacgtttaaaagttaaaaccgccctaattggaatagcg 47212140  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 749167 - 749098
Alignment:
Q  18 ctaaagaggtgaaacatccattcagaaatctcctcaagcgcaataaccgacctcaacttgtcatttccat 87  Q
    |||||||||| || || || || || ||||| ||||| ||||| ||||||||||||||| ||||||||||    
T  749167 ctaaagaggtcaagcacccttttaggaatcttctcaaacgcaagaaccgacctcaacttatcatttccat 749098  T

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