View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11613_high_17 (Length: 235)
Name: NF11613_high_17
Description: NF11613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11613_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 47212299 - 47212504
Alignment:
| Q |
16 |
cagattgttcagcaattcactggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggattcaagaatgatgctgcactttactctg |
115 |
Q |
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| T |
47212299 |
cagatttttcagcaattcactggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggatttaagaatgatgctgcactttactctg |
47212398 |
T |
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| Q |
116 |
ctgtgattactggtgcaatcaatgttatctcaactatagtttcaatatattcagtggataaacttggtcgtcgaaagctattactcgaagccggtgttca |
215 |
Q |
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| T |
47212399 |
ctgtgattactggtgcaatcaatgtcatctcaactatagtttcaatatattcagtggataaacttggtcgtcgaaagctattactggaagctggtgttca |
47212498 |
T |
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| Q |
216 |
aatgtt |
221 |
Q |
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|||||| |
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| T |
47212499 |
aatgtt |
47212504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 47185683 - 47185768
Alignment:
| Q |
28 |
caattcactggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggattcaagaatgatgctgcactttactc |
113 |
Q |
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| T |
47185683 |
caattcaccggcatcaatgcaatcatgttctatgctccagtattgttcaacactttgggatttcacaatgatgcttcactttactc |
47185768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 47198219 - 47198307
Alignment:
| Q |
25 |
cagcaattcactggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggattcaagaatgatgctgcactttactc |
113 |
Q |
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| T |
47198219 |
cagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaatgatgcttcactttactc |
47198307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 748980 - 748784
Alignment:
| Q |
28 |
caattcactggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggattcaagaatgatgctgcactttactctgctgtgattactg |
127 |
Q |
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| T |
748980 |
caattcacaggcatcaacgcgatcatgttttatgcaccagttttgttcaatacagtgggattcaagaatgatgcttccctctattcagctgtgattactg |
748881 |
T |
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| Q |
128 |
gtgcaatcaatgttatctcaactatagtttcaatatattcagtggataaacttggtcgtcgaaagctattactcgaagccggtgttcaaatgttctt |
224 |
Q |
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| T |
748880 |
gtgcagttaatgtcctctccacaattgtgtctatctacttcgttgataaacttggtcgtcgtatgttactgttggaagccggtgtacaaatgttctt |
748784 |
T |
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