View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11613_high_18 (Length: 224)

Name: NF11613_high_18
Description: NF11613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11613_high_18
NF11613_high_18
[»] chr1 (27 HSPs)
chr1 (1-208)||(7635646-7635853)
chr1 (1-208)||(16056716-16056926)
chr1 (3-165)||(27355648-27355809)
chr1 (1-204)||(16060886-16061092)
chr1 (20-165)||(27331738-27331882)
chr1 (1-208)||(16062128-16062338)
chr1 (14-208)||(16055481-16055678)
chr1 (1-165)||(13430918-13431082)
chr1 (1-204)||(21434394-21434599)
chr1 (11-189)||(34065095-34065275)
chr1 (1-205)||(11666920-11667124)
chr1 (1-161)||(1950420-1950578)
chr1 (1-176)||(45941417-45941590)
chr1 (1-165)||(49498458-49498620)
chr1 (1-176)||(21107241-21107414)
chr1 (14-108)||(30938578-30938672)
chr1 (21-146)||(34732340-34732463)
chr1 (1-161)||(23021888-23022046)
chr1 (1-176)||(21018417-21018590)
chr1 (1-176)||(21111108-21111281)
chr1 (1-164)||(37183825-37183986)
chr1 (1-165)||(20398854-20399016)
chr1 (1-165)||(28111057-28111219)
chr1 (14-165)||(29643182-29643331)
chr1 (21-164)||(31204859-31205000)
chr1 (1-176)||(41058252-41058425)
chr1 (35-176)||(21114448-21114587)
[»] chr3 (45 HSPs)
chr3 (1-201)||(22993607-22993808)
chr3 (4-208)||(18542638-18542844)
chr3 (1-128)||(17545940-17546067)
chr3 (1-161)||(10884941-10885099)
chr3 (1-165)||(28008019-28008181)
chr3 (28-164)||(30219954-30220088)
chr3 (1-162)||(18641723-18641882)
chr3 (1-162)||(18644719-18644878)
chr3 (1-162)||(35412594-35412753)
chr3 (21-203)||(55031904-55032090)
chr3 (1-165)||(7486655-7486817)
chr3 (1-176)||(2775566-2775739)
chr3 (1-176)||(2778809-2778982)
chr3 (1-128)||(3292943-3293069)
chr3 (1-176)||(16243957-16244130)
chr3 (1-176)||(45896465-45896638)
chr3 (1-162)||(10106551-10106709)
chr3 (1-165)||(2873648-2873810)
chr3 (1-165)||(24125583-24125745)
chr3 (1-165)||(24128860-24129022)
chr3 (4-176)||(25584764-25584934)
chr3 (1-165)||(53815912-53816074)
chr3 (1-176)||(29343811-29343984)
chr3 (1-176)||(43926919-43927092)
chr3 (1-164)||(50461497-50461658)
chr3 (14-112)||(282191-282288)
chr3 (2-208)||(47051581-47051788)
chr3 (21-203)||(55034764-55034950)
chr3 (4-165)||(23298563-23298722)
chr3 (16-176)||(22783702-22783859)
chr3 (16-176)||(22788066-22788223)
chr3 (21-165)||(32287271-32287413)
chr3 (21-165)||(54723846-54723988)
chr3 (1-164)||(16184636-16184797)
chr3 (21-176)||(20728584-20728737)
chr3 (21-164)||(43809684-43809825)
chr3 (21-164)||(47055030-47055171)
chr3 (23-165)||(17141514-17141654)
chr3 (21-204)||(19301413-19301595)
chr3 (23-176)||(31549278-31549429)
chr3 (1-165)||(6434726-6434888)
chr3 (1-173)||(8461427-8461597)
chr3 (21-162)||(19304640-19304779)
chr3 (21-165)||(11190631-11190773)
chr3 (21-165)||(28266021-28266163)
[»] chr6 (22 HSPs)
chr6 (1-208)||(13021170-13021377)
chr6 (1-208)||(12988043-12988248)
chr6 (1-208)||(11192499-11192701)
chr6 (1-208)||(9839312-9839517)
chr6 (1-164)||(2846304-2846466)
chr6 (13-204)||(23008074-23008265)
chr6 (13-204)||(23780099-23780290)
chr6 (1-165)||(23384713-23384875)
chr6 (1-165)||(26942396-26942558)
chr6 (1-165)||(3596742-3596904)
chr6 (1-88)||(28848842-28848929)
chr6 (23-88)||(5259957-5260021)
chr6 (1-128)||(20185745-20185870)
chr6 (1-128)||(22150121-22150246)
chr6 (21-165)||(2379251-2379393)
chr6 (21-165)||(6513277-6513419)
chr6 (13-128)||(11247774-11247888)
chr6 (21-176)||(17106560-17106713)
chr6 (1-176)||(30655445-30655618)
chr6 (1-165)||(22561124-22561286)
chr6 (132-204)||(24371348-24371422)
chr6 (21-163)||(9953984-9954124)
[»] chr2 (26 HSPs)
chr2 (1-204)||(34682680-34682883)
chr2 (1-204)||(26365915-26366119)
chr2 (1-204)||(5105708-5105911)
chr2 (21-204)||(25820767-25820950)
chr2 (4-108)||(35521378-35521482)
chr2 (1-176)||(30926522-30926695)
chr2 (1-208)||(45457143-45457351)
chr2 (1-163)||(25959652-25959812)
chr2 (1-165)||(24235077-24235239)
chr2 (1-165)||(24238349-24238511)
chr2 (1-165)||(8888617-8888779)
chr2 (1-165)||(9185386-9185548)
chr2 (4-176)||(40781456-40781626)
chr2 (1-208)||(31427457-31427665)
chr2 (1-176)||(31585891-31586064)
chr2 (21-165)||(9188614-9188756)
chr2 (21-165)||(22021069-22021211)
chr2 (1-165)||(37279638-37279800)
chr2 (1-164)||(33310648-33310809)
chr2 (1-163)||(30274732-30274892)
chr2 (1-165)||(22630822-22630984)
chr2 (1-85)||(38015500-38015583)
chr2 (21-204)||(25138851-25139035)
chr2 (23-165)||(12219799-12219939)
chr2 (1-163)||(43207854-43208013)
chr2 (23-164)||(36808405-36808544)
[»] chr5 (20 HSPs)
chr5 (1-208)||(21915121-21915328)
chr5 (2-189)||(31575415-31575604)
chr5 (1-162)||(22936901-22937060)
chr5 (1-176)||(41876714-41876887)
chr5 (1-204)||(42062921-42063125)
chr5 (29-147)||(18239474-18239591)
chr5 (1-162)||(21335662-21335821)
chr5 (1-165)||(21332641-21332803)
chr5 (21-176)||(34831783-34831936)
chr5 (3-176)||(4099467-4099638)
chr5 (1-165)||(26752662-26752824)
chr5 (21-165)||(31863734-31863876)
chr5 (1-165)||(37215044-37215205)
chr5 (58-112)||(18765654-18765708)
chr5 (23-165)||(23044163-23044303)
chr5 (21-174)||(22131249-22131400)
chr5 (21-165)||(20055793-20055935)
chr5 (1-176)||(7271015-7271188)
chr5 (1-163)||(17664551-17664710)
chr5 (1-147)||(41306506-41306650)
[»] chr4 (43 HSPs)
chr4 (1-208)||(37739678-37739882)
chr4 (1-190)||(22172307-22172497)
chr4 (21-164)||(53094526-53094669)
chr4 (21-164)||(33408279-33408420)
chr4 (1-85)||(5677448-5677532)
chr4 (22-164)||(8877462-8877603)
chr4 (1-162)||(18911497-18911656)
chr4 (1-162)||(5706390-5706550)
chr4 (31-165)||(48014027-48014161)
chr4 (1-161)||(37103181-37103339)
chr4 (1-165)||(40616769-40616931)
chr4 (1-176)||(19820726-19820899)
chr4 (1-176)||(52006481-52006654)
chr4 (1-162)||(12238264-12238423)
chr4 (21-173)||(3797761-3797911)
chr4 (1-173)||(5681426-5681596)
chr4 (1-112)||(8874774-8874884)
chr4 (1-176)||(40903033-40903206)
chr4 (1-164)||(56195526-56195687)
chr4 (1-165)||(19859483-19859645)
chr4 (21-165)||(24150691-24150833)
chr4 (1-165)||(39501647-39501809)
chr4 (21-165)||(52530896-52531038)
chr4 (1-164)||(15405043-15405204)
chr4 (21-208)||(34319832-34320020)
chr4 (21-163)||(15432097-15432237)
chr4 (21-163)||(27014282-27014422)
chr4 (1-88)||(33493729-33493818)
chr4 (39-165)||(39498346-39498470)
chr4 (4-176)||(24044091-24044261)
chr4 (1-165)||(34017742-34017904)
chr4 (1-85)||(44808995-44809078)
chr4 (1-165)||(48637504-48637666)
chr4 (1-164)||(33926971-33927132)
chr4 (23-165)||(11195696-11195836)
chr4 (21-55)||(12782923-12782957)
chr4 (1-122)||(27677059-27677178)
chr4 (1-165)||(5670576-5670738)
chr4 (1-165)||(5672894-5673056)
chr4 (1-53)||(15446807-15446859)
chr4 (1-85)||(29324824-29324907)
chr4 (1-53)||(44164781-44164833)
chr4 (157-185)||(48013955-48013983)
[»] scaffold0233 (1 HSPs)
scaffold0233 (1-208)||(9938-10146)
[»] chr7 (22 HSPs)
chr7 (1-208)||(5796538-5796746)
chr7 (1-192)||(18562468-18562661)
chr7 (14-176)||(13809472-13809632)
chr7 (1-204)||(48645460-48645663)
chr7 (1-165)||(5242116-5242279)
chr7 (13-112)||(7227526-7227624)
chr7 (1-176)||(20594249-20594422)
chr7 (1-165)||(45290446-45290608)
chr7 (1-208)||(16165735-16165943)
chr7 (28-161)||(4695494-4695625)
chr7 (1-165)||(23224871-23225033)
chr7 (1-165)||(45287035-45287197)
chr7 (1-112)||(4546855-4546964)
chr7 (1-165)||(13842626-13842788)
chr7 (1-204)||(2441202-2441406)
chr7 (1-176)||(4542783-4542956)
chr7 (1-176)||(11919820-11919993)
chr7 (21-176)||(17730820-17730973)
chr7 (2-165)||(37415389-37415550)
chr7 (2-163)||(14683412-14683571)
chr7 (4-128)||(6603448-6603570)
chr7 (1-85)||(9864771-9864854)
[»] chr8 (18 HSPs)
chr8 (1-173)||(4868249-4868420)
chr8 (1-165)||(30784915-30785078)
chr8 (1-165)||(16953773-16953935)
chr8 (1-163)||(25594620-25594780)
chr8 (4-161)||(18721246-18721401)
chr8 (16-176)||(5613668-5613825)
chr8 (21-165)||(25231097-25231239)
chr8 (21-207)||(33883265-33883453)
chr8 (1-164)||(18825849-18826010)
chr8 (21-164)||(36710598-36710739)
chr8 (23-165)||(33419674-33419814)
chr8 (1-165)||(10498175-10498337)
chr8 (21-176)||(12583024-12583180)
chr8 (1-165)||(17930977-17931139)
chr8 (1-85)||(18824434-18824517)
chr8 (4-182)||(5980258-5980433)
chr8 (1-163)||(25591442-25591602)
chr8 (13-97)||(23643828-23643911)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-181)||(48349-48526)
[»] scaffold0015 (1 HSPs)
scaffold0015 (21-176)||(198166-198319)
[»] scaffold0962 (1 HSPs)
scaffold0962 (1-162)||(3246-3405)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-204)||(62516-62717)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-165)||(293022-293184)
[»] scaffold0412 (1 HSPs)
scaffold0412 (4-165)||(133-292)
[»] scaffold0427 (1 HSPs)
scaffold0427 (1-165)||(3749-3911)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-204)||(118367-118568)
[»] scaffold0757 (1 HSPs)
scaffold0757 (1-176)||(5351-5524)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-164)||(89769-89930)
[»] scaffold0080 (1 HSPs)
scaffold0080 (1-176)||(27108-27281)
[»] scaffold0381 (1 HSPs)
scaffold0381 (21-163)||(5361-5501)
[»] scaffold0250 (1 HSPs)
scaffold0250 (1-165)||(19395-19557)
[»] scaffold0084 (1 HSPs)
scaffold0084 (23-165)||(29386-29526)
[»] scaffold1755 (1 HSPs)
scaffold1755 (4-176)||(123-293)
[»] scaffold0270 (1 HSPs)
scaffold0270 (4-164)||(25-183)
[»] scaffold0007 (1 HSPs)
scaffold0007 (28-176)||(248544-248690)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 7635646 - 7635853
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7635646 aggaattatggactgtaatctgagaagagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 7635745  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaactttattttctgatatttac 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7635746 agtaggtgcagtgtaccaattatgggaatttagagaattcgaaagacctagtctaatctctctctatcttttctaaacaactttattttctgatatttac 7635845  T
Q  201 tttttatg 208  Q
    ||||||||    
T  7635846 tttttatg 7635853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 16056926 - 16056716
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| |||  |||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||| |||||||||||||||||||  ||    
T  16056926 aggaattagggatcgtaatctgagaagagggtcctaagtcaagggattgattagagctattttagttaatcatcgtaaaactagagaaatattcatgaga 16056827  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc--tatcttttctaaacaa-ctttattttctgatatt 197  Q
    | |||||| ||||||  ||||| ||||| | | || ||||||||||| ||||||||||||||||  || |||||| |||||| |||||||||||| ||||    
T  16056826 aataggtgtagtgtatcaattaggggaaatcaaagtattcgaaagacctagtctcatctctctccataacttttccaaacaatctttattttctgttatt 16056727  T
Q  198 tactttttatg 208  Q
    || ||||||||    
T  16056726 taatttttatg 16056716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 27355809 - 27355648
Alignment:
Q  3 gaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaag 102  Q
    |||||| |||||||||| |||||| ||||||||||||||||| ||||||||||  |||||||||||| |||||||||||||||||||||||||||||||     
T  27355809 gaattagggactgtaatatgagaagagggtcctaagtcaagggattgattaggcctattttagttaaccatcgtgaaactagagaaatattcataggaaa 27355710  T
Q  103 taggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    |||||||||||||| ||||| || || | |||  ||||||||||| |||| ||||||||||||    
T  27355709 taggtgcagtgtaccaattagggaaactcaga-tattcgaaagacctagtttcatctctctct 27355648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 16061092 - 16060886
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| ||| |||||| |||||| ||  ||||||||||| | ||||||||||| ||||||||||||||||||| |||||||||||||||||||  ||    
T  16061092 aggaattagggattgtaatatgagaagagaatcctaagtcaatggattgattagggctattttagttaatcatcgtaaaactagagaaatattcatgaga 16060993  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctat--cttttctaaacaa-ctttattttctgatatt 197  Q
    | |||||||||||||| ||||| || || | | |  ||||||||||| |||||||||||||||| ||  |||||| |||||| |||||||||||| ||||    
T  16060992 aataggtgcagtgtaccaattagggaaaatcaaatgattcgaaagacctagtctcatctctctccattacttttccaaacaatctttattttctgttatt 16060893  T
Q  198 tactttt 204  Q
    || ||||    
T  16060892 taatttt 16060886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 27331882 - 27331738
Alignment:
Q  20 ctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaa 119  Q
    ||||||| ||| ||||||||||||| ||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||    
T  27331882 ctgagaagaggttcctaagtcaagggatttattagggctattttagttaaccatcgtgaaactagagaaatattcataggaaataggtgcattgtaccaa 27331783  T
Q  120 ttatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    ||| || || | |||| ||||||||||| ||||||| |||||||||    
T  27331782 ttagggaaactcagaggattcgaaagacctagtctc-tctctctct 27331738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 16062338 - 16062128
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| ||| ||||||||||||| ||||| |||||| |||| ||| |||| || ||||||||||||||||||| |||||||||||||||||||  ||    
T  16062338 aggaattagggattgtaatctgagaagagggttctaagttaagggattaattatggctattttagttaatcatcgtaaaactagagaaatattcatgaga 16062239  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc--tatcttttctaaacaa-ctttattttctgatatt 197  Q
    | |||||| ||||||| |||||||| || | | |  ||||||||||| ||||||||||||| ||  || |||||  |||||| |||||||||||  ||||    
T  16062238 aataggtgtagtgtaccaattatggaaaatcaaatgattcgaaagacctagtctcatctctttccataactttttcaaacaatctttattttctattatt 16062139  T
Q  198 tactttttatg 208  Q
    || ||||||||    
T  16062138 taatttttatg 16062128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 16055678 - 16055481
Alignment:
Q  14 tgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtg 113  Q
    ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||| | ||||||||||  |||||||||| ||||    
T  16055678 tgtaatctgagaagagggtcctaagtcaagggattgattagggctattttagttaatcatcataaaactaaaaaaatattcatgagaagtaggtgtagtg 16055579  T
Q  114 tacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc--tatcttttctaaacaa-ctttattttctgatatttactttttatg 208  Q
    ||| ||||| || || | | |  ||||| ||||| ||||||||||||||||  || |||||| ||||||  ||||||| ||| |||||| ||||||||    
T  16055578 taccaattaaggaaaatcaaatgattcggaagacctagtctcatctctctccataacttttccaaacaatatttatttactgttatttaatttttatg 16055481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 13431082 - 13430918
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    ||||||||  ||||||||| |||||| || |||||||||||||| ||||||||||| ||||| |||||| |||||| |||||||||||||||||||  ||    
T  13431082 aggaattagagactgtaatatgagaagagagtcctaagtcaagggattgattagggctatttaagttaaccatcgtaaaactagagaaatattcatgaga 13430983  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | || ||||||||||| ||||| ||||| | |||| ||||||||| | |  ||||||||||||||    
T  13430982 actaagtgcagtgtaccaattaggggaactcagaggattcgaaagccctgatctcatctctctct 13430918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 21434599 - 21434394
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| ||||||||||||||||| || ||| |||||||| | |||||||| || ||||||||||||   |||||||| ||||||| |||||||||||    
T  21434599 aggaattagggactgtaatctgagaagagtgtcttaagtcaatggattgattatggctattttagttaactgtcgtgaaagtagagaagtattcatagga 21434500  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaa--ctttattttctgatattt 198  Q
    | |||||| ||||||| ||||| | ||| | | || ||||||| ||| ||||||||||||||  ||| ||||| || |||  ||||| |||||| |||||    
T  21434499 aataggtgtagtgtaccaattaggagaactcataggattcgaatgacctagtctcatctctccatatattttccaagcaaatctttactttctgttattt 21434400  T
Q  199 actttt 204  Q
    | ||||    
T  21434399 aatttt 21434394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 34065275 - 34065095
Alignment:
Q  11 gactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgca 110  Q
    ||||||||| |||||  |||||||||||| |||  ||||||||||| |||||  ||||| ||||||||||||||| || |||||||||||| ||| ||||    
T  34065275 gactgtaatatgagaggagggtcctaagttaagagattgattagggctatttg-gttaaccatcgtgaaactagataagtattcataggaaatagatgca 34065177  T
Q  111 gtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc--tatcttttctaaacaa-ctttatttt 189  Q
     ||||| ||||| |  || | |||| ||||||||||| ||||||||||||||||  ||||||||| |||||| |||||||||    
T  34065176 ttgtaccaattaggaaaactcagaggattcgaaagacctagtctcatctctctccatatcttttccaaacaatctttatttt 34065095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 11667124 - 11666920
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || |||||||||||||| ||| ||||||||||||| ||||||||||| |||||| ||||| ||| |||||| ||||||   |||| || ||    
T  11667124 aggaattaggggctgtaatctgagaagaggatcctaagtcaagggattgattagggctatttt-gttaaccattgtgaaattagagattcattcgtaaga 11667026  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaa--ctttattttctgatattt 198  Q
    | |||||||||| ||| ||||| ||||| | |||| ||||||||||| |  || ||||| | ||||| |||||||| |||  ||||| |||||| |||||    
T  11667025 aataggtgcagtataccaatta-gggaaatcagaggattcgaaagacatgatcccatctttgtctatattttctaatcaaatctttactttctgttattt 11666927  T
Q  199 acttttt 205  Q
    | |||||    
T  11666926 aattttt 11666920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 1950578 - 1950420
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||| ||||||||||| ||||||||||  |||||| |||||  |||||||||||||| ||  ||||||| ||    
T  1950578 aggaattaggggctgtagtttgagaagagggttctaagtcaagggattgattaggactatttt-gttaactatcgtgaaactagaaaatcattcataaga 1950480  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctct 161  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |||||||||||||    
T  1950479 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctagtctcatctct 1950420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 45941417 - 45941590
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | ||||||||||||||||| |||||| ||||||||||  |||||| |||||  |||||||||||||| ||  ||||||| ||    
T  45941417 aggaattaggggctgtagtttgagaaaagggtcctaactcaagggattgattaggactatttt-gttaactatcgtgaaactagaaaatcattcataaga 45941515  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  45941516 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 45941590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 49498620 - 49498458
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||| | ||  ||||||| ||    
T  49498620 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactataaaatcattcataaga 49498522  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| ||||| |||||  ||||||||||| || ||||||||||||||    
T  49498521 a-taggtgcagtataccaattaggggaacttagatgattcgaaagacctaatctcatctctctct 49498458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 21107414 - 21107241
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||||||||||||||| ||||||||||  |||||| |||||  |||||||||||||| ||  ||||||| ||    
T  21107414 aggaattaggggctgtagtttgagaagagggtcctaagtcaagggattgattaggactatttt-gttaactatcgtgaaactagaaaatcattcataaga 21107316  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||||||| ||| ||||| | |||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  21107315 a-taggtgcagtataccaattaggtgaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 21107241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 30938672 - 30938578
Alignment:
Q  14 tgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtg 108  Q
    |||||||| | || ||| ||||||||||||| |||||||| |  |||||||||||| ||||||||||||||| |||||||||||| || ||||||    
T  30938672 tgtaatcttataagaggatcctaagtcaagggattgattatgactattttagttaaccatcgtgaaactagataaatattcatagaaaataggtg 30938578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 34732463 - 34732340
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| ||||||||||||||||| |||||| |||| |||||| ||||| ||||||||||||||||||  |||| || ||| ||  |||||| ||| |||    
T  34732463 tgagaagagggtcctaagtcaagggattgat-agggctatttt-gttaaccatcgtgaaactagagaatcattcgtaagaaataattgcagtataccaat 34732366  T
Q  121 tatgggaatttagagaattcgaaaga 146  Q
    || ||||| | |||| ||||||||||    
T  34732365 taggggaactcagaggattcgaaaga 34732340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 23022046 - 23021888
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||  ||| |||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| |||||||  |  ||||||| ||    
T  23022046 aggaattaggggctgtggtctaagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaatatcattcataaga 23021948  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctct 161  Q
    | |||||||||| ||| ||||| ||||| |||||  ||||||||||| || ||||||||||    
T  23021947 a-taggtgcagtataccaattaggggaacttagatgattcgaaagacctaatctcatctct 23021888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 21018590 - 21018417
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||| |||||||||| ||||||||||  |||||| |||||  |||||| ||||| | ||  ||||||| ||    
T  21018590 aggaattaggggctgtagtttgagaagagggtcataagtcaagggattgattaggactatttt-gttaactatcgtggaactaaaaaaccattcataaga 21018492  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | ||||| |||| ||||||||| |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  21018491 a-taggttcagtatacaaattaggggaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 21018417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 21111281 - 21111108
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||||| |||| |||||||| |  |||||| |||||  |||||||||||||| ||  ||||||| ||    
T  21111281 aggaattaggggctgtagtttgagaagagggtcctaagttaagggattgattaagactatttt-gttaactatcgtgaaactagaaaatcattcataaga 21111183  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||||||| ||| ||||| | |||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  21111182 a-taggtgcagtataccaattaggagaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 21111108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 37183986 - 37183825
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||| |||||| |||||  |||||| ||||||| ||  ||| ||| ||    
T  37183986 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattagggctatttt-gttaactatcgtggaactagaaaatcattaatacga 37183888  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc 164  Q
    | |||||||||| ||| ||||| |||||  | ||  ||||||||||| |  |||||||||||||    
T  37183887 a-taggtgcagtataccaattaggggaacatcgatgattcgaaagacctgatctcatctctctc 37183825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 20398854 - 20399016
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| ||  |||| |||||||| ||||| |||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  20398854 aggaattaggggttgtagtctgagaagagggttctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 20398952  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  | ||||||||| |  ||||||||||||||    
T  20398953 a-taggtgcagtataccaattaggggaacatagatgactcgaaagacctgatctcatctctctct 20399016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 28111057 - 28111219
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  | |||| |||||  |||||| ||||||| ||  ||||||| ||    
T  28111057 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactgtttt-gttaactatcgtggaactagaaaatcattcataaga 28111155  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||  |  ||||||||||||||    
T  28111156 a-taggtgcagtataccaattaggggaacatagatgattcgaaagatctgatctcatctctctct 28111219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 29643331 - 29643182
Alignment:
Q  14 tgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtg 113  Q
    |||||||  |||| |||||||||| |||||| ||||||||||| |||||| |||||  |||||| ||||||| ||  ||||||| ||| ||||||||||     
T  29643331 tgtaatcctagaagagggtcctaactcaagggattgattagggctatttt-gttaactatcgtggaactagaaaatcattcataagaa-taggtgcagta 29643234  T
Q  114 tacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    ||| | ||| |||||  | ||  ||||||||||| ||  |||||||||||||    
T  29643233 tactagttaggggaacatcgatgattcgaaagacctaaactcatctctctct 29643182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 31204859 - 31205000
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||||||| |||||| ||||||||||| |||||| |||||  |||||| || |||| ||  ||| ||| ||| |||||||||| ||| |||    
T  31204859 tgagaagagggtcctaactcaagggattgattagggatatttt-gttaactatcgtggaattagaaaatcattaatacgaa-taggtgcagtataccaat 31204956  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctc 164  Q
    || |||||  | ||  ||||||||||| |  |||||||||||||    
T  31204957 taggggaacatcgatgattcgaaagacctgatctcatctctctc 31205000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 41058425 - 41058252
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| |||||||| |  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  41058425 aggaattaggggctgtagtttgagaagagggtcctaaatcaagggattgattatgactatttt-gttaactatcgtggaactagaaaatcattcataaga 41058327  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||||||  ||| |||||  ||||  ||||  ||||||||||| || |||| |||||||  || ||||||||    
T  41058326 a-taggtgcagcataccaattagaggaacatagatgattcgaaagacctaatctcttctctcttcatattttctaa 41058252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 176
Target Start/End: Complemental strand, 21114587 - 21114448
Alignment:
Q  35 taagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaattatgggaatttaga 134  Q
    |||||||||| |||||||| |  |||||| |||||  |||||||||||||| ||  ||||||| ||| |||||||||| ||| ||||| | |||  ||||    
T  21114587 taagtcaagggattgattaagactatttt-gttaactatcgtgaaactagaaaatcattcataagaa-taggtgcagtataccaattaggagaacataga 21114490  T
Q  135 gaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
      ||||||||||| |  ||||||||||||  || ||||||||    
T  21114489 tgattcgaaagacctgatctcatctctcttcatattttctaa 21114448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 22993808 - 22993607
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| |||||||||| |||||| ||||||||||||||||| ||||||||||| |||||||||||| |||||| ||||||||||| ||||||||| |    
T  22993808 aggaattagggactgtaatttgagaagagggtcctaagtcaagggattgattagggatattttagttaaccatcgtaaaactagagaagtattcatagta 22993709  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaacttt-attttctgatattta 199  Q
    | |||||||||||||| ||||| ||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||  ||||||    
T  22993708 aataggtgcagtgtaccaattaggggaacttagaggattcgaaagacctagtctcatctctctctatcttttctaaacaactttaattttctattattta 22993609  T
Q  200 ct 201  Q
    ||    
T  22993608 ct 22993607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 4 - 208
Target Start/End: Original strand, 18542638 - 18542844
Alignment:
Q  4 aattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagt 103  Q
    ||||| ||||||||||||||||| | |||| |||||||||| ||||||||||  |||||||||||| ||||||||| |||||| | |||||||||||| |    
T  18542638 aattagggactgtaatctgagaagaaggtcttaagtcaagggattgattaggactattttagttaaccatcgtgaagctagaggagtattcataggaaat 18542737  T
Q  104 a-ggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaa-caactttattttctgatatttact 201  Q
    | ||||||||| || || || ||||| | |||| ||||||||||| |  |||||||||||| ||| |||||||||  |||||||  ||||| ||||||||    
T  18542738 agggtgcagtgaaccaaataggggaactcagaggattcgaaagacatgatctcatctctctttatattttctaaagaaactttaacttctgttatttact 18542837  T
Q  202 ttttatg 208  Q
    |||||||    
T  18542838 ttttatg 18542844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 17545940 - 17546067
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| ||| ||||||||||||| |||||| |||||||||| ||||||||||| |||||||||||| ||||||||||||||||||  ||||||| ||    
T  17545940 aggaattagggattgtaatctgagaagagggtcataagtcaagggattgattagggctattttagttaaccatcgtgaaactagagaatcattcataaga 17546039  T
Q  101 agtaggtgcagtgtacaaattatgggaa 128  Q
    | |||||||||| ||| ||||| |||||    
T  17546040 aataggtgcagtataccaattaggggaa 17546067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 10884941 - 10885099
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||| ||||||||||| ||||||||||  |||||| |||||  |||||||||||||| ||  ||||||| ||    
T  10884941 aggaattaggggctgtagtttgagaagagggttctaagtcaagggattgattaggactatttt-gttaactatcgtgaaactagaaaatcattcataaga 10885039  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctct 161  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |||||||||||||    
T  10885040 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctagtctcatctct 10885099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 28008181 - 28008019
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||| ||| |||||| ||||||||||  |||||| |||||  |||||||||||||||||  ||||||| ||    
T  28008181 aggaattaggggctgtagtttgagaagagggtcataactcaagggattgattaggactatttt-gttaactatcgtgaaactagagaataattcataaga 28008083  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||||||||  |||||  ||||  ||||||||||| || ||||||||||||||    
T  28008082 a-taggtgcagtatacaaatttggggaacatagatgattcgaaagacctaatctcatctctctct 28008019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 30220088 - 30219954
Alignment:
Q  28 agggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaattatggga 127  Q
    ||||||||||||||||| ||||||||||| |||||| |||||  |||||||||||||||||  ||||||| ||| ||||||||||  || ||||| ||||    
T  30220088 agggtcctaagtcaagggattgattagggctatttt-gttaactatcgtgaaactagagaatcattcataagaa-taggtgcagttgaccaattagggga 30219991  T
Q  128 atttagagaattcgaaagacgtagtctcatctctctc 164  Q
    | |||||  ||||||||||| |  |||||||||||||    
T  30219990 acttagatgattcgaaagacatgatctcatctctctc 30219954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 18641882 - 18641723
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| ||||||||||||||||| || ||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  18641882 aggaattagggactgtaatctgagaagagtgtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 18641784  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctc 162  Q
    | |||||||||| ||| ||||| |||||  | ||  | ||||||||| ||||||||||||||    
T  18641783 a-taggtgcagtataccaattaggggaacattgatgactcgaaagacctagtctcatctctc 18641723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 18644878 - 18644719
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| ||||||||||||||||| || ||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  18644878 aggaattagggactgtaatctgagaagagtgtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 18644780  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctc 162  Q
    | |||||||||| ||| ||||| |||||  | ||  | ||||||||| ||||||||||||||    
T  18644779 a-taggtgcagtataccaattaggggaacattgatgactcgaaagacctagtctcatctctc 18644719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 35412594 - 35412753
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| ||||||||||||||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  35412594 aggaattagggactgtaatctgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 35412692  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctc 162  Q
    | |||||||||| ||| |||||  ||||  | ||  | ||||||||| ||||||||||||||    
T  35412693 a-taggtgcagtataccaattagaggaacattgatgactcgaaagacctagtctcatctctc 35412753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 55032090 - 55031904
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaag---taggtgcagtgtaca 117  Q
    |||||| ||||| |||| |||||| ||||||||||  |||||| |||||  |||||| ||||||||||  ||||||| |||    |||||||||| |||     
T  55032090 tgagaagagggttctaactcaagggattgattaggactatttt-gttaactatcgtggaactagagaatcattcataagaatgaataggtgcagtatacc 55031992  T
Q  118 aattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaa--ctttattttctgatatttacttt 203  Q
    ||||| |||||  | ||  ||||||||||| ||||||||||||||  ||| ||||| |||||   |||||||||||||||||||||||    
T  55031991 aattaggggaacatcgatgattcgaaagacctagtctcatctctccgtatattttccaaacatatctttattttctgatatttacttt 55031904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 7486655 - 7486817
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  7486655 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 7486753  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||||    
T  7486754 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctctct 7486817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 2775566 - 2775739
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  2775566 aggaattaggggctgtagtttgagaagagggtcctaattcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 2775664  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  2775665 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 2775739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 2778809 - 2778982
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  2778809 aggaattaggggctgtagtttgagaagagggtcctaattcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 2778907  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  2778908 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 2778982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 3293069 - 3292943
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| ||  ||||||| |||||  ||||| |||||||||| ||||||||||| |||||| ||||| ||||||||||||| ||||  ||||||| ||    
T  3293069 aggaattaggggttgtaatcggagaagtgggtcttaagtcaagggattgattagggctatttt-gttaaccatcgtgaaactatagaatcattcataaga 3292971  T
Q  101 agtaggtgcagtgtacaaattatgggaa 128  Q
    | |||||||| | ||| ||||| |||||    
T  3292970 aataggtgcaatataccaattaggggaa 3292943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 16243957 - 16244130
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||| |||||||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  16243957 aggaattaggggctgtagtttgagaagagggtcttaagtcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 16244055  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  16244056 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 16244130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 45896465 - 45896638
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  45896465 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 45896563  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  45896564 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 45896638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 10106709 - 10106551
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||| ||||||||||| ||||||||||  |||||| |||||  |||||||||||||| ||  ||||||| ||    
T  10106709 aggaattaggggctgtagtttgagaagagggttctaagtcaagggattgattaggactatttt-gttaactatcgtgaaactagaaaatcattcataaga 10106611  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctc 162  Q
    | |||||||||| ||| ||||| || ||  ||||  |||| |||||| ||||||||||||||    
T  10106610 a-taggtgcagtataccaatta-ggaaacatagatgattcaaaagacctagtctcatctctc 10106551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 2873648 - 2873810
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| || |||| ||  ||||||| ||    
T  2873648 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaattagaaaatcattcataaga 2873746  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||||    
T  2873747 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctctct 2873810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 24125583 - 24125745
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  24125583 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 24125681  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| || ||  ||||  ||||||||||| |  ||||||||||||||    
T  24125682 a-taggtgcagtataccaattagggaaacatagatgattcgaaagacctgatctcatctctctct 24125745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 24128860 - 24129022
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  24128860 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 24128958  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| || ||  ||||  ||||||||||| |  ||||||||||||||    
T  24128959 a-taggtgcagtataccaattagggaaacatagatgattcgaaagacctgatctcatctctctct 24129022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 176
Target Start/End: Original strand, 25584764 - 25584934
Alignment:
Q  4 aattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagt 103  Q
    ||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||| |    
T  25584764 aattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataagaa-t 25584861  T
Q  104 aggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    ||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  25584862 aggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 25584934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 53815912 - 53816074
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||| |||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  53815912 aggaattaggggctgtagtttgagaagagggttctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 53816010  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||||    
T  53816011 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctctct 53816074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 29343984 - 29343811
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  29343984 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 29343886  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||||| | ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  29343885 a-taggtgcaatataccaattaggggaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 29343811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 43926919 - 43927092
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  ||| || ||||||| ||  ||||||| ||    
T  43926919 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcatggaactagaaaatcattcataaga 43927017  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  43927018 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacatgatctcatctctcttcatattttctaa 43927092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 50461658 - 50461497
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||| |||||| |||||  |||||| ||||||| ||  ||| ||| ||    
T  50461658 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattagggctatttt-gttaactatcgtggaactagaaaatcattaatacga 50461560  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc 164  Q
    | |||||||||| ||| ||||| |||||  | ||  ||||||||||| |  |||||||||||||    
T  50461559 a-taggtgcagtataccaattaggggaacatcgatgattcgaaagacctgatctcatctctctc 50461497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 282288 - 282191
Alignment:
Q  14 tgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagt 112  Q
    ||||||||||||| ||||| ||||||||| | |||||||||   ||||||| |||| |||||| ||||||||| |||||||||| ||  ||||||||||    
T  282288 tgtaatctgagaagagggttctaagtcaatg-attgattagaactattttaattaaccatcgtaaaactagaggaatattcataagacataggtgcagt 282191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 208
Target Start/End: Original strand, 47051581 - 47051788
Alignment:
Q  2 ggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaa 101  Q
    ||||||| || ||||| | |||||| |||||||||| |||||| ||||||||| | |||||| |||||  |||||| ||||||| ||  ||| ||| |||    
T  47051581 ggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattagagctatttt-gttaactatcgtggaactagaaaatcattaatacgaa 47051679  T
Q  102 gtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc--tatctttt-ctaaacaactttattttctgatattt 198  Q
     |||||||||| ||| | ||| |||||  ||||  ||||||||||| |  |||||||||||||  | |||||| | |||| |  |||||||||| |||||    
T  47051680 -taggtgcagtataccagttaggggaacatagatgattcgaaagacctgatctcatctctctcattgtcttttccaaaactatcttattttctgttattt 47051778  T
Q  199 actttttatg 208  Q
    ||||||||||    
T  47051779 actttttatg 47051788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 55034950 - 55034764
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaag---taggtgcagtgtaca 117  Q
    |||||| ||| | |||| |||||| ||||||||||  |||||| |||||  |||||| ||||||||||  ||||||| |||    |||||||||| |||     
T  55034950 tgagaagaggattctaactcaagggattgattaggactatttt-gttaactatcgtggaactagagaatcattcataagaatgaataggtgcagtatacc 55034852  T
Q  118 aattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaa--ctttattttctgatatttacttt 203  Q
    ||||| |||||  | ||  ||||||||||| ||||||||||||||  | | ||||| |||||   |||||||||||||||||||||||    
T  55034851 aattaggggaacatcgatgattcgaaagacctagtctcatctctccatgtattttccaaacatatctttattttctgatatttacttt 55034764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 165
Target Start/End: Complemental strand, 23298722 - 23298563
Alignment:
Q  4 aattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagt 103  Q
    ||||| || ||||| | |||||| |||||||||| |||||| |||||||| |  |||||| |||||  |||||| ||||||| |   ||||||| ||| |    
T  23298722 aattaggggctgtagtttgagaagagggtcctaactcaagggattgattaagactatttt-gttaactatcgtggaactagaaagtcattcataagaa-t 23298625  T
Q  104 aggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    ||||||||  ||| ||||| ||||| |||||  ||||||||||| || ||||||||||||||    
T  23298624 aggtgcagcataccaattaagggaacttagatgattcgaaagacctaatctcatctctctct 23298563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 22783702 - 22783859
Alignment:
Q  16 taatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgta 115  Q
    ||||||||||| ||||||||||||||||| ||| ||||||  |||| | |||||  |||||||||||||||||  ||||||| ||| || |||  ||||     
T  22783702 taatctgagaagagggtcctaagtcaagggatttattaggactattat-gttaactatcgtgaaactagagaatcattcataagaa-tatgtgatgtgtg 22783799  T
Q  116 caaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | ||||| |||||   |||| ||||||||||| |  ||||||||||||| || ||||||||    
T  22783800 ccaattaggggaa-acagaggattcgaaagacctgatctcatctctctccatattttctaa 22783859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 22788066 - 22788223
Alignment:
Q  16 taatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgta 115  Q
    ||||||||||| ||||||||||||||||| ||| ||||||  |||| | |||||  |||||||||||||||||  ||||||| ||| || |||  ||||     
T  22788066 taatctgagaagagggtcctaagtcaagggatttattaggactattat-gttaactatcgtgaaactagagaatcattcataagaa-tatgtgatgtgtg 22788163  T
Q  116 caaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | ||||| |||||   |||| ||||||||||| |  ||||||||||||| || ||||||||    
T  22788164 ccaattaggggaa-acagaggattcgaaagacctgatctcatctctctccatattttctaa 22788223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 32287413 - 32287271
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||| ||||| |||||| |||||||| |  |||||| |||||  |||||| ||||||||||  ||||||| ||| |||||||||| ||| |||    
T  32287413 tgagaagagggccctaactcaagggattgattatgactatttt-gttaactatcgtggaactagagaatcattcataagaa-taggtgcagtataccaat 32287316  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    || |||||  ||||  ||||||||||| |  ||||||||||||||    
T  32287315 taggggaacatagatgattcgaaagacctgatctcatctctctct 32287271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 54723846 - 54723988
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| ||||| |||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||| |||||||||| ||| |||    
T  54723846 tgagaagagggttctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataagaa-taggtgcagtataccaat 54723943  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    ||||||||  ||||  ||||| ||||| |  ||||||||||||||    
T  54723944 tatgggaacatagatgattcggaagacctgatctcatctctctct 54723988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 16184797 - 16184636
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | | |||||| |||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  16184797 aggaattaggggctgtagtttaagaaaaaggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 16184699  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc 164  Q
    | |||||||||| ||| ||||| |||||  | ||  ||||||||||| |  |||||||||||||    
T  16184698 a-taggtgcagtataccaattaggggaacatcgatgattcgaaagacctgatctcatctctctc 16184636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 20728737 - 20728584
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| ||||||||||||||||| ||||||||||| |||||| |||||  ||| |  ||||||| ||  ||||||| ||| || ||||||| ||| |||    
T  20728737 tgagaagagggtcctaagtcaagggattgattagggctatttt-gttaaatatcatcgaactagaaaatcattcataagaa-tatgtgcagtataccaat 20728640  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    || |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  20728639 taggggaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 20728584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 43809684 - 43809825
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| || ||||||||||| ||| |||    
T  43809684 tgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga-gtaggtgcagtataccaat 43809781  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctc 164  Q
    || |||||  | ||  ||||||||||| |  |||||||||||||    
T  43809782 taggggaacatcgatgattcgaaagacctgatctcatctctctc 43809825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 47055030 - 47055171
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||||||| |||||| ||||||||| | |||||| |||||  |||||| ||||||| ||  ||| ||| ||| |||||||||| ||| | |    
T  47055030 tgagaagagggtcctaactcaagggattgattagagctatttt-gttaactatcgtggaactagaaaatcattaatacgaa-taggtgcagtatactagt 47055127  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctc 164  Q
    ||||||||  ||||  ||||||||||| |  |||||||||||||    
T  47055128 tatgggaacatagatgattcgaaagacctgatctcatctctctc 47055171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 17141514 - 17141654
Alignment:
Q  23 agaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaatta 122  Q
    |||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| |||||| |||  ||||||| ||| |||||||| | ||| |||||    
T  17141514 agaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagcgaatcattcataagaa-taggtgcaatataccaatta 17141611  T
Q  123 tgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
     |||||  |||| ||||| |||||| ||  |||||||||||||    
T  17141612 ggggaacatagataattcaaaagacctaagctcatctctctct 17141654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 19301595 - 19301413
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||||||| |||||| ||| |||||   |||||| |||||  |||||  ||||||| ||  ||||||| ||| |||||||||||||  ||     
T  19301595 tgagaagagggtcctaactcaagggatttattagaactatttt-gttaactatcgtagaactagaaaatcattcataagaa-taggtgcagtgtagcaaa 19301498  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaa--ctttattttctgatatttactttt 204  Q
    || ||||| | |||| ||||||||||| ||||||||||||||  ||| ||||  ||||||  |||||||||||| |||||| ||||    
T  19301497 tacgggaactcagaggattcgaaagacctagtctcatctctc-atatatttttcaaacaaatctttattttctgttatttaatttt 19301413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 31549278 - 31549429
Alignment:
Q  23 agaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaatta 122  Q
    |||| ||||||||||||||||| |||||||| |  |||||| |||||  |||||| ||||||| || |||||||| ||| |||||||||| ||| |||||    
T  31549278 agaagagggtcctaagtcaagggattgattatgactatttt-gttaactatcgtggaactagaaaattattcataagaa-taggtgcagtataccaatta 31549375  T
Q  123 tgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
     || || |||||  |||| |||||| |  ||| ||||||||  || ||||||||    
T  31549376 gggaaacttagatgattcaaaagacctgatcttatctctcttcatattttctaa 31549429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 6434888 - 6434726
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||| |||  |||||| |||||||| |  |||||| |||||  |||||| ||||||| ||  |||||||  |    
T  6434888 aggaattaggggctgtagtttgagaagagggttctatctcaagggattgattatgactatttt-gttaactatcgtggaactagaaaatcattcataaaa 6434790  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| || ||||||||||||||    
T  6434789 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctaatctcatctctctct 6434726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 8461597 - 8461427
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||| | |||| |||||| ||||||||||  |||||| |||||  ||| || ||||| ||||  ||||| | ||    
T  8461597 aggaattaggggctgtagtttgagaagaggatactaaatcaagggattgattaggactatttt-gttaactatcatggaactatagaatcattcacaaga 8461499  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttc 173  Q
    | |||||||||| ||| ||||| || ||  ||||  ||||||||||| || |||||||||||| |||||||||    
T  8461498 a-taggtgcagtataccaattagggaaacatagatgattcgaaagacctaatctcatctctctttatcttttc 8461427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 19304779 - 19304640
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||| ||| ||| || |||||||| |  |||||| |||||  |||||| ||||||| ||  ||||||| ||| |||||||||||||| ||     
T  19304779 tgagaagagggtcgtaactcaggggattgattatgactatttt-gttaactatcgtggaactagaaaatcattcataagaa-taggtgcagtgtaccaag 19304682  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctc 162  Q
     | ||||| | |||| ||| ||||||| ||||||||||||||    
T  19304681 caggggaactcagaggatttgaaagacctagtctcatctctc 19304640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 11190631 - 11190773
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| ||||| |||| |||||| ||||||||||  |||||| |||||  |||||| ||| ||| ||  ||||||| ||| |||||||| | ||| |||    
T  11190631 tgagaagagggttctaactcaagggattgattaggactatttt-gttaactatcgtggaacaagaaaatcattcataagaa-taggtgcaatataccaat 11190728  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    || |||||  ||||  ||||||||||| |  ||||||||||||||    
T  11190729 taggggaacatagatgattcgaaagacctgatctcatctctctct 11190773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 28266021 - 28266163
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| ||||| |||  |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  |||||||  || |||||||||| ||| |||    
T  28266021 tgagaagagggttctatctcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaaaa-taggtgcagtataccaat 28266118  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    || |||||  ||||  ||||||||||| |  ||||||||||||||    
T  28266119 taggggaacatagatgattcgaaagacctgatctcatctctctct 28266163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 13021377 - 13021170
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||| ||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||  ||    
T  13021377 aggagttagggactataatctgagaagagggtcctaagtcaagggattgattagggctattttagttaatcatcgtaaaactagagaaatattcatgaga 13021278  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaactttattttctgatatttac 200  Q
    | |||||||||||||| ||||| ||||| |||||| |||| |||||| || |||||||||||||||| |||| ||||||||||||||||||| |||||||    
T  13021277 aataggtgcagtgtaccaattaggggaacttagaggattcaaaagacctactctcatctctctctatattttataaacaactttattttctgctatttac 13021178  T
Q  201 tttttatg 208  Q
    || |||||    
T  13021177 ttgttatg 13021170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 12988248 - 12988043
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcat-agg 99  Q
    |||||||| |||||||||| || ||| ||||||||||||||||| ||||||||| | ||| |  |||||||||||| ||||||||||||||||||| |||    
T  12988248 aggaattagggactgtaatatgcgaagagggtcctaagtcaagggattgattagagctatgtatgttaatcatcgtaaaactagagaaatattcatgagg 12988149  T
Q  100 aagtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaactttattttctgatattta 199  Q
    || |||||||||||||| ||||| ||||| |||||| |||| |||||| ||||| ||  ||||||||| |||| ||||||||||||||||||  ||||||    
T  12988148 aa-taggtgcagtgtaccaattacgggaacttagaggattcaaaagacctagtcaca--tctctctatattttataaacaactttattttctactattta 12988052  T
Q  200 ctttttatg 208  Q
    |||||||||    
T  12988051 ctttttatg 12988043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 11192701 - 11192499
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| |||||||| |||||||| || ||| ||||||||||      |||||| ||||||||||||||||||| |||||| ||||||||||||  ||    
T  11192701 aggaattagggactgtagtctgagaagagagtcttaagtcaaggg-----ttagggctattttagttaatcatcgtaaaactatagaaatattcatgaga 11192607  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaactttattttctgatatttac 200  Q
    | |||||||| ||||| ||||| ||||  | |||| ||||||||||| || ||  |||||||||||||||||||||||||||||||||| || |||||||    
T  11192606 aataggtgcattgtaccaattaggggacctcagaggattcgaaagacctaatcatatctctctctatcttttctaaacaactttattttatgttatttac 11192507  T
Q  201 tttttatg 208  Q
    ||||||||    
T  11192506 tttttatg 11192499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 9839517 - 9839312
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| |||||||| | |||||| ||||||||||||||||| ||||||||||| || ||| |||||  |||||||||||||| ||  ||||||| ||    
T  9839517 aggaattagggactgtagtttgagaagagggtcctaagtcaagggattgattagggctacttt-gttaactatcgtgaaactagaaaatcattcataaga 9839419  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaac-aactttattttctgatattta 199  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||| || |||||||||| |||||||||||||  ||||||    
T  9839418 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctctc-atattttctaaacaaactttattttcttttattta 9839321  T
Q  200 ctttttatg 208  Q
     ||||||||    
T  9839320 atttttatg 9839312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 2846304 - 2846466
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||||||| ||||||| |||||||| || |||||| ||||| ||||||||||||||||||  |||| || ||    
T  2846304 aggaattaggggctgtagtttgagaagagggtcctatgtcaagggattgattatggctatttt-gttaaccatcgtgaaactagagaatcattcgtaaga 2846402  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc 164  Q
    | |||||||||| ||| ||||| ||| | |||||| ||||||||||| |  |||||||| ||||    
T  2846403 aataggtgcagtataccaattagggggacttagaggattcgaaagacttgatctcatctatctc 2846466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 23008074 - 23008265
Alignment:
Q  13 ctgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagt 112  Q
    ||||||||||| || ||||||||||||||||| ||||||||||| |||||| |||||  |||||||||||| ||||  ||||| | ||| ||||||  ||    
T  23008074 ctgtaatctgataagagggtcctaagtcaagggattgattagggctatttt-gttaactatcgtgaaactaaagaatcattcacaagaa-taggtgttgt 23008171  T
Q  113 gtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaa--ctttattttctgatatttactttt 204  Q
    | || |||||||| || | |||| ||||||||||| |  ||||||||||||   | ||||| ||||||  ||||||||| || |||||||||||    
T  23008172 ggaccaattatggaaactcagaggattcgaaagacttgatctcatctctcttcttattttccaaacaaatctttattttatgttatttactttt 23008265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 23780290 - 23780099
Alignment:
Q  13 ctgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagt 112  Q
    ||||||||||| || ||||||||||||||||| ||||||||||| |||||| |||||  |||||||||||| ||||  ||||| | ||| ||||||  ||    
T  23780290 ctgtaatctgataagagggtcctaagtcaagggattgattagggctatttt-gttaactatcgtgaaactaaagaatcattcacaagaa-taggtgttgt 23780193  T
Q  113 gtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaa--ctttattttctgatatttactttt 204  Q
    | || |||||||| || | |||| ||||||||||| |  ||||||||||||   | ||||| ||||||  ||||||||| || |||||||||||    
T  23780192 ggaccaattatggaaactcagaggattcgaaagacttgatctcatctctcttcttattttccaaacaaatctttattttatgttatttactttt 23780099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 23384875 - 23384713
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||| ||||||| ||    
T  23384875 aggaattaggggctgtagtttgagaagagggtcctaaatcaagggattgattaggactatttt-gttaactatcgtggaactagaaaaacattcataaga 23384777  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  | ||||||||| || ||||||||||||||    
T  23384776 a-taggtgcagtataccaattaggggaacatagatgaatcgaaagacctaatctcatctctctct 23384713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 26942558 - 26942396
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||||| |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||||||    
T  26942558 aggaattaggggctgtaatttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcatagga 26942460  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  | ||||||||| |  ||||||||||||||    
T  26942459 a-taggtgcagtataccaattaggggaacatagatgaatcgaaagacctgatctcatctctctct 26942396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 3596904 - 3596742
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  3596904 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 3596806  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  || |  ||||||||||| || ||||||||||||||    
T  3596805 a-taggtgcagtataccaattaggggaacataaatgattcgaaagacctaatctcatctctctct 3596742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 28848842 - 28848929
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaa 88  Q
    |||||||| |||||||||| |||||| |||| |||||||||||| ||| || |||  |||||||||||| |||||| |||||||||||    
T  28848842 aggaattagggactgtaatttgagaagagggccctaagtcaagggatttatcaggactattttagttaaccatcgtaaaactagagaa 28848929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 5259957 - 5260021
Alignment:
Q  23 agaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaa 88  Q
    |||| ||||||||||||||||| ||||||||||| |||||| ||||| ||||||||||||||||||    
T  5259957 agaagagggtcctaagtcaagggattgattagggctatttt-gttaaccatcgtgaaactagagaa 5260021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 20185745 - 20185870
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||||||||||||||| |||||||| |  |||||| |||||  |||||||||||||| ||  ||||||| ||    
T  20185745 aggaattaggggctgtagtttgagaagagggtcctaagtcaagggattgattatgactatttt-gttaactatcgtgaaactagaaaatcattcataaga 20185843  T
Q  101 agtaggtgcagtgtacaaattatgggaa 128  Q
    | |||||||||| ||| ||||| |||||    
T  20185844 a-taggtgcagtataccaattaggggaa 20185870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 22150246 - 22150121
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||||||||||||||| |||||||| |  |||||| |||||  |||||||||||||| ||  ||||||| ||    
T  22150246 aggaattaggggctgtagtttgagaagagggtcctaagtcaagggattgattatgactatttt-gttaactatcgtgaaactagaaaatcattcataaga 22150148  T
Q  101 agtaggtgcagtgtacaaattatgggaa 128  Q
    | |||||||||| ||| ||||| |||||    
T  22150147 a-taggtgcagtataccaattaggggaa 22150121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 2379251 - 2379393
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||| |||||||||| ||| |||    
T  2379251 tgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataagaa-taggtgcagtataccaat 2379348  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    || |||||  ||||  ||| ||||||| |  ||||||||||||||    
T  2379349 taggggaacatagatgatttgaaagacctgatctcatctctctct 2379393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 6513277 - 6513419
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| || ||||||| |||||| |||||||| |  |||||| |||||  |||||| ||||||||||  ||||||| ||| |||||||||| ||  |||    
T  6513277 tgagaagagagtcctaactcaagggattgattaagactatttt-gttaactatcgtggaactagagaatcattcataagaa-taggtgcagtatatcaat 6513374  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    || |||||| ||||  ||||||||||| |  ||||||||||||||    
T  6513375 taggggaatatagatgattcgaaagacctgatctcatctctctct 6513419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 11247774 - 11247888
Alignment:
Q  13 ctgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagt 112  Q
    ||||||||||| || || || ||||||||||| |||||||| || |||||| ||||| |||| |||||||||||||  |||| || ||| || ||| |||    
T  11247774 ctgtaatctgataagagagttctaagtcaagggattgattaaggatatttt-gttaaccatcatgaaactagagaatcattcgtaagaaataagtgtagt 11247872  T
Q  113 gtacaaattatgggaa 128  Q
     ||||||||| |||||    
T  11247873 atacaaattaggggaa 11247888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 17106713 - 17106560
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| ||||||||||||||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||| || ||||| | ||| |||    
T  17106713 tgagaagagggtcctaagtcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataagaa-tatgtgcaatataccaat 17106616  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    || |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  17106615 taggggaacatagatgattcgaaagacttgatctcatctctcttcatattttctaa 17106560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 30655445 - 30655618
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  ||  || ||||||||||  ||||||| ||    
T  30655445 aggaattaggggctgtagtttgagaagagggtcctaattcaagggattgattaggactatttt-gttaactattatggaactagagaatcattcataaga 30655543  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | || ||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  30655544 a-taagtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 30655618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 22561286 - 22561124
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| |||||||| |  |||||| ||| |  |||||||||| ||| ||  ||||||| ||    
T  22561286 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaagactatttt-gttgactatcgtgaaaccagaaaatcattcataaga 22561188  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  ||| ||||||| |  ||||||||||||||    
T  22561187 a-taggtgcagtataccaattaggggaacgtagatgatttgaaagacctgatctcatctctctct 22561124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 24371348 - 24371422
Alignment:
Q  132 agagaattcgaaagacgtagtctcatctctctctatcttttctaaacaa--ctttattttctgatatttactttt 204  Q
    |||| |||||||| || ||||||||||||||  ||| ||||| ||||||  |||||||||||| |||||||||||    
T  24371348 agaggattcgaaatacctagtctcatctctccatatattttccaaacaaatctttattttctgttatttactttt 24371422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 9953984 - 9954124
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||||||| |||||| |||||||| |  |||||| |||||  |||||| || |||| || |||||||| ||| |||||||||| ||| |||    
T  9953984 tgagaagagggtcctaactcaagggattgattaagactatttt-gttaactatcgtggaattagaaaattattcataagaa-taggtgcagtataccaat 9954081  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctct 163  Q
    || |||||  ||||  ||||||||||  |  ||||||||||||    
T  9954082 taggggaacatagatgattcgaaagagctgatctcatctctct 9954124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 1e-61; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 34682680 - 34682883
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| ||||||||||||||||| || |||||||||||||| ||||||||||| |||||| ||||| ||||||||||||||||||||| ||||||||    
T  34682680 aggaattagggactgtaatctgagaagagagtcctaagtcaagggattgattagggctattttggttaaccatcgtgaaactagagaaatactcatagga 34682779  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaactttattttctgatatttac 200  Q
    | || ||||||||||| ||||| || || | |||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||| || |||||||    
T  34682780 aatacgtgcagtgtaccaattagggaaactcagaggattcgaaagacatagtctcatttctctctatcttttctaaacaactttaatttatgttatttac 34682879  T
Q  201 tttt 204  Q
    ||||    
T  34682880 tttt 34682883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 26365915 - 26366119
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||||||  ||||||| ||    
T  26365915 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagagaatcattcataaga 26366013  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctc-tctatcttttctaaa--caactttattttctgatatt 197  Q
    | ||||| || | ||| ||||| |||||  |||| ||||| |||||| |||||||||||||| | ||| ||||| |||   | |||||||||||| ||||    
T  26366014 a-taggtacactataccaattaggggaacatagataattcaaaagacctagtctcatctctcatatatattttccaaaactatctttattttctgttatt 26366112  T
Q  198 tactttt 204  Q
    |||||||    
T  26366113 tactttt 26366119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5105708 - 5105911
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  5105708 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcatatga 5105806  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaa--ctttattttctgatattt 198  Q
    | |||||||||| ||| ||||| |||||  |||| |||| ||||||| |  ||||||||||||  || |||||||| |||  ||||||||| || |||||    
T  5105807 a-taggtgcagtataccaattaggggaacatagataatttgaaagacctgatctcatctctcttcatattttctaaccaaatctttattttatgttattt 5105905  T
Q  199 actttt 204  Q
    | ||||    
T  5105906 aatttt 5105911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 25820950 - 25820767
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||| |||||||||| ||  |||    
T  25820950 tgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataagaa-taggtgcagtatatcaat 25820853  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaac--aactttattttctgatatttactttt 204  Q
    || |||||  | ||  ||||||||||| ||||||||||||||  ||| ||||| ||||  | |||||||||||| |||||||||||    
T  25820852 taggggaacatcgatgattcgaaagacctagtctcatctctccatatattttccaaacatatctttattttctgttatttactttt 25820767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 35521482 - 35521378
Alignment:
Q  4 aattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagt 103  Q
    ||||| ||| ||||||||||||| ||||||||||||||| |  ||||||||   |||||||||||| |||||  |||||||||||||||| | ||||| |    
T  35521482 aattagggattgtaatctgagaagagggtcctaagtcaatgagttgattagaactattttagttaaccatcgaaaaactagagaaatatttacaggaaat 35521383  T
Q  104 aggtg 108  Q
    |||||    
T  35521382 aggtg 35521378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 30926522 - 30926695
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| ||  ||| ||||||||| ||||||||||||||| | ||||||||||  |||||| | ||| ||||||||||||||| ||  |||| ||| |    
T  30926522 aggaattaggggttgtcatctgagaagagggtcctaagtcaatggattgattaggactatttt-gctaaccatcgtgaaactagaaaatcattcgtagaa 30926620  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||||||| ||  ||||| |||||   |||| ||||||||||| |  | |||||||||||||| ||||||||    
T  30926621 aataggtgcagtatatcaatta-gggaaaccagaggattcgaaagacctgatttcatctctctctatattttctaa 30926695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 45457143 - 45457351
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||| ||| |||||| ||||||||||| |||||| |||||  |||||| ||||||| ||  ||| ||| ||    
T  45457143 aggaattaggggctgtagtttgagaagagggtcttaactcaagggattgattagggctatttt-gttaactatcgtggaactagaaaatcattaatacga 45457241  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc--tatctttt-ctaaacaactttattttctgatatt 197  Q
    | |||||||||| ||  ||||| ||||| |||||  ||||||||||| |  |||||||||||||  | |||||| | |||| |  |||||||||| ||||    
T  45457242 a-taggtgcagtataacaattaggggaacttagatgattcgaaagacctgatctcatctctctccttgtcttttccaaaactatcttattttctgttatt 45457340  T
Q  198 tactttttatg 208  Q
    |||||||||||    
T  45457341 tactttttatg 45457351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 25959812 - 25959652
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| ||  |||| |||||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  25959812 aggaattaggggttgtagtctgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 25959714  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctct 163  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||    
T  25959713 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctct 25959652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 24235077 - 24235239
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaat-attcatagg 99  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| |||||| ||||| ||||||| |    
T  24235077 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactag-gaaatcattcataag 24235174  T
Q  100 aagtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    || |||||||||| ||| ||||| |||||  |||| |||||||||||| |  |||||||| |||||    
T  24235175 aa-taggtgcagtataccaattaggggaacatagataattcgaaagacctgatctcatctttctct 24235239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 24238349 - 24238511
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaat-attcatagg 99  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| |||||| ||||| ||||||| |    
T  24238349 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggtatatttt-gttaactatcgtggaactag-gaaatcattcataag 24238446  T
Q  100 aagtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    || |||||||||| ||| ||||| |||||  |||| |||||||||||| |  |||||||| |||||    
T  24238447 aa-taggtgcagtataccaattaggggaacatagataattcgaaagacctgatctcatctttctct 24238511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 8888617 - 8888779
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| |||||||||   |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  8888617 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattagaactatttt-gttaactatcgtggaactagaaaatcattcataaga 8888715  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  ||| ||||||| || ||||||||||||||    
T  8888716 a-taggtgcagtataccaattaggggaacatagatgatttgaaagacctaatctcatctctctct 8888779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 9185548 - 9185386
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    ||||||||  ||||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  9185548 aggaattagagactgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 9185450  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | || ||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||||    
T  9185449 a-tatgtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctctct 9185386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 176
Target Start/End: Original strand, 40781456 - 40781626
Alignment:
Q  4 aattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagt 103  Q
    ||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||| |    
T  40781456 aattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataagaa-t 40781553  T
Q  104 aggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    ||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  40781554 aggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 40781626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 31427665 - 31427457
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||| |||||| |||||  |||||| || |||| ||  ||| ||| ||    
T  31427665 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattagggctatttt-gttaactatcgtggaattagaaaatcattaatacga 31427567  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc--tatctttt-ctaaacaactttattttctgatatt 197  Q
    | |||||||||| ||| ||||| |||||  | ||  ||||||||||| |  |||||||||||||  | |||||| | |||| |  |||||||||| ||||    
T  31427566 a-taggtgcagtataccaattaggggaacatcgatgattcgaaagacctgatctcatctctctccttgtcttttccaaaactatcttattttctgttatt 31427468  T
Q  198 tactttttatg 208  Q
    |||||||||||    
T  31427467 tactttttatg 31427457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 31586064 - 31585891
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  31586064 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 31585966  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | ||| |||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  31585965 a-tagatgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 31585891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 9188756 - 9188614
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||||||| |||||| ||||||||||  |||||| ||| |  |||||| ||||||| ||  ||||||| ||| |||||||||| ||| |||    
T  9188756 tgagaagagggtcctaactcaagggattgattaggactatttt-gttgactatcgtggaactagaaaatcattcataagaa-taggtgcagtataccaat 9188659  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    || |||||  ||||  ||||||||||| |  ||||||||||||||    
T  9188658 taggggaacatagatgattcgaaagacctgatctcatctctctct 9188614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 22021069 - 22021211
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| ||||| |||| |||||| ||||||||||  |||||| |||||  |||||| ||||||||||  ||||||| ||| |||||||||| ||| |||    
T  22021069 tgagaagagggttctaactcaagggattgattaggactatttt-gttaactatcgtggaactagagaatcattcataagaa-taggtgcagtataccaat 22021166  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    || || ||  ||||  ||||||||||| |  ||||||||||||||    
T  22021167 tagggtaacatagatgattcgaaagaccttatctcatctctctct 22021211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 37279800 - 37279638
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||| |||||| |||||| |||||||| |  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  37279800 aggaattaggggctgtagtttgagaagaggatcctaactcaagggattgattatgactatttt-gttaactatcgtggaactagaaaatcattcataaga 37279702  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||||    
T  37279701 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctctct 37279638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 33310648 - 33310809
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||| |||||| |||||  | |||| ||||||| || |||| ||| ||    
T  33310648 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattagggctatttt-gttaactaccgtggaactagaaaattattaatatga 33310746  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc 164  Q
    | ||| |||||| ||| ||||| |||||  | ||  ||||||||||| |  |||||||||||||    
T  33310747 a-tagttgcagtataccaattaggggaacatcgatgattcgaaagacctgatctcatctctctc 33310809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 30274892 - 30274732
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||| ||| |||||| |||||||| |  |||||| |||||  |||||||||||||| ||  ||||||| ||    
T  30274892 aggaattaggggctgtagtttgagaagagggtcttaactcaagggattgattatgactatttt-gttaactatcgtgaaactagaaaatcattcataaga 30274794  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctct 163  Q
    | |||||||||| ||| ||||| | |||  ||||  ||||||||||| |  ||||||||||||    
T  30274793 a-taggtgcagtataccaattaggagaacatagatgattcgaaagacatgctctcatctctct 30274732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 22630822 - 22630984
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || |||||| |  |||||| |||||||| |||||| |||||||| |  |||||| |||||  |||||| |||||| |||  ||||||| ||    
T  22630822 aggaattaggggctgtaaccctagaaaatggtcctaactcaagggattgattatgactatttt-gttaactatcgtggaactagggaatcattcataaga 22630920  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  || |  ||||||||||| ||  |||||||||||||    
T  22630921 a-taggtgcagtataccaattaagggaacataaatgattcgaaagacctaaactcatctctctct 22630984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 38015500 - 38015583
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactaga 85  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||| |||||| |||||  |||||| |||||||    
T  38015500 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattagggctatttt-gttaactatcgtggaactaga 38015583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 25139035 - 25138851
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||||||| |||||| |||||||| |  |||||| |||||  |||||| |||| || ||   |||||| ||| |||||||||| ||| |||    
T  25139035 tgagaagagggtcctaactcaagggattgattatgactatttt-gttaactatcgtggaacttgaaaatcgttcataagaa-taggtgcagtataccaat 25138938  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctc-tatcttttctaaacaa--ctttattttctgatatttactttt 204  Q
    || || ||| | || |||||||||||| |  ||||||||||||| ||| ||||| ||||||  ||||||||| || |||||| ||||    
T  25138937 tagggaaatatcgataattcgaaagacctgatctcatctctctcttatattttccaaacaaatctttattttatgttatttaatttt 25138851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 12219799 - 12219939
Alignment:
Q  23 agaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaatta 122  Q
    |||| |||||||||| |||||| |||||||| |  |||||| | |||  |||||| ||||||| ||| ||||| | ||| |||||||||| ||| |||||    
T  12219799 agaagagggtcctaactcaagggattgattatgactatttt-gctaactatcgtggaactagaaaaacattcacaagaa-taggtgcagtataccaatta 12219896  T
Q  123 tgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
     |||||  ||||  ||||||||||| ||  |||||||||||||    
T  12219897 ggggaacatagatgattcgaaagacctaaactcatctctctct 12219939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 43208013 - 43207854
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||  |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  43208013 aggaattaggggctgtagtttgagaagagggtcctac-tcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 43207916  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctct 163  Q
    | ||| |||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||    
T  43207915 a-tagatgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctct 43207854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 36808544 - 36808405
Alignment:
Q  23 agaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaatta 122  Q
    |||| |||||| ||| |||||| |||||||||   |||||| |||||  || ||| ||||||| ||  ||||||| ||| |||||||||||||| |||||    
T  36808544 agaagagggtcttaactcaagggattgattagaactatttt-gttaactattgtggaactagaaaatcattcataagaa-taggtgcagtgtaccaatta 36808447  T
Q  123 tgggaatttagagaattcgaaagacgtagtctcatctctctc 164  Q
     ||||| ||| || ||| ||||||| |  |||||||||||||    
T  36808446 ggggaacttaaaggatttgaaagacctgatctcatctctctc 36808405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 21915121 - 21915328
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| ||||||||||||||||| |||||| |||||||||| ||||||||||| |||||||||||| |||||||||| |||||||||||||||| ||    
T  21915121 aggaattagggactgtaatctgagaagagggtcataagtcaagggattgattagggctattttagttaaccatcgtgaaattagagaaatattcataaga 21915220  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaactttattttctgatatttac 200  Q
    | |||||| ||||||| ||||| ||||| | | || ||||||||||| ||||| ||||||||||||||||||| || |||  |||||||||  |||||||    
T  21915221 aataggtgtagtgtaccaattaggggaactcaaaggattcgaaagacctagtcacatctctctctatcttttccaatcaatcttattttctattatttac 21915320  T
Q  201 tttttatg 208  Q
    ||||||||    
T  21915321 tttttatg 21915328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 189
Target Start/End: Original strand, 31575415 - 31575604
Alignment:
Q  2 ggaattatggactgtaatctgagaaaagggtcctaagtcaa-ggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||  ||||||||| |||||| || |||| ||||||| || ||||||||| | |||||||||||| ||||||||||||||||||||||||||| ||    
T  31575415 ggaattagagactgtaatttgagaagagagtcccaagtcaaagggattgattagagctattttagttaaccatcgtgaaactagagaaatattcatatga 31575514  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaac-aactttatttt 189  Q
    | ||| |||||||||| || || ||||| | | || ||||||||||| ||||||||||||||  ||||||||| |||| |||||||||||    
T  31575515 aatagctgcagtgtaccaaataggggaagtcataggattcgaaagacctagtctcatctctccatatcttttccaaacaaactttatttt 31575604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 22937060 - 22936901
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| ||||||||||||||||| |||||||||| | |||| ||||||||||  |||||| |||||  |||||||||||||| ||  ||||||| ||    
T  22937060 aggaattagggactgtaatctgagaagagggtcctaactaaagggattgattaggactatttt-gttaactatcgtgaaactagaaaatcattcataaga 22936962  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctc 162  Q
    | |||||||||| ||| ||||| |||||  | ||  | ||||||||| ||||||||||||||    
T  22936961 a-taggtgcagtataccaattaggggaacattgatgactcgaaagacctagtctcatctctc 22936901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 41876887 - 41876714
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| || |||||||| ||    
T  41876887 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaattattcataaga 41876789  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  41876788 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 41876714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 42062921 - 42063125
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| |||||||||| |||||| |||||||||| |||||  ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  42062921 aggaattagggactgtaatatgagaagagggtcctaactcaagagattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 42063019  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctc-tctatcttttctaaa--caactttattttctgatatt 197  Q
    | |||||||||| ||| ||||| || ||  ||||  |||| |||||| |||||||||||||| | ||| ||||| |||   | |||||||||||| ||||    
T  42063020 a-taggtgcagtataccaattagggaaacatagatgattcaaaagacctagtctcatctctcatatatattttccaaaactatctttattttctgttatt 42063118  T
Q  198 tactttt 204  Q
    |||||||    
T  42063119 tactttt 42063125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 18239591 - 18239474
Alignment:
Q  29 gggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaattatgggaa 128  Q
    |||||||||||||||| ||||||||||| |||||| |||||| |||||||||||||||||  ||||  | ||| ||||||||||  || ||||| |||||    
T  18239591 gggtcctaagtcaagggattgattagggctatttt-gttaattatcgtgaaactagagaatcattcgaaagaaataggtgcagtacaccaattaggggaa 18239493  T
Q  129 tttagagaattcgaaagac 147  Q
     | |||| |||||||||||    
T  18239492 ctcagaggattcgaaagac 18239474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 21335821 - 21335662
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| | ||| ||||||||| | ||||||||||  |||||| |||||  |||||| ||||||||||  ||||||| ||    
T  21335821 aggaattaggggctgtagtttgagaagacggttctaagtcaaaggattgattaggactatttt-gttaactatcgtggaactagagaatcattcataaga 21335723  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctc 162  Q
    | |||||||||| ||||||||| |||||  ||||  ||||||||||| | ||||||||||||    
T  21335722 a-taggtgcagtatacaaattaggggaacatagatgattcgaaagacttggtctcatctctc 21335662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 21332803 - 21332641
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||| ||||||||| | ||||||||||  ||||||| ||||  |||||| ||||||||||  ||||||| ||    
T  21332803 aggaattaggggctgtagtttgagaagagggttctaagtcaatgaattgattaggactatttta-ttaactatcgtggaactagagaatcattcataaga 21332705  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||||    
T  21332704 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctctct 21332641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 34831783 - 34831936
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| || |||||||| ||| |||||||| | ||| |||    
T  34831783 tgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaattattcataagaa-taggtgcattataccaat 34831880  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    || ||||| | |||  ||||||||||| || ||||||||||||  || ||||||||    
T  34831881 taggggaactcagaagattcgaaagacctaatctcatctctcttcatattttctaa 34831936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 176
Target Start/End: Complemental strand, 4099638 - 4099467
Alignment:
Q  3 gaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaag 102  Q
    |||||| || ||||| | |||||| |||||| |||||||||| |||||||| |  |||||| | |||  |||||| ||||||| ||  ||||||| |||     
T  4099638 gaattaggggctgtagtttgagaagagggtcttaagtcaagggattgattatgactatttt-gctaactatcgtgcaactagaaaatcattcataagaa- 4099541  T
Q  103 taggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    |||||||||| ||| ||||| |||||  ||||  ||||||||||| ||||||||||| |||  || ||||||||    
T  4099540 taggtgcagtataccaattaggggaacatagatgattcgaaagacctagtctcatctttcttcatattttctaa 4099467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 26752824 - 26752662
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  26752824 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 26752726  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    |  ||||||||| ||| ||||| |||||  || |  ||||||||||| |  ||||||||||||||    
T  26752725 aa-aggtgcagtataccaattaggggaacataaatgattcgaaagacctgatctcatctctctct 26752662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 31863734 - 31863876
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| ||| |||||| |||||| |||||||| |  |||||| |||||  |||||| ||||||| ||  ||||||| ||| |||||||||| ||  |||    
T  31863734 tgagaagaggatcctaactcaagggattgattatgactatttt-gttaactatcgtggaactagaaaatcattcataagaa-taggtgcagtatatcaat 31863831  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    || |||||  ||||  ||||||||||| |||||||||||||||||    
T  31863832 taggggaacatagatgattcgaaagacctagtctcatctctctct 31863876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 37215044 - 37215205
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| |||||||| |  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  37215044 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattatgactatttt-gttaactatcgtggaactagaaaatcattcataaga 37215142  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||| | ||| ||||| ||||| |||||  ||||||||||| || | ||||||||||||    
T  37215143 a-taggtgcaatataccaatta-gggaacttagatgattcgaaagacctaatttcatctctctct 37215205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 18765708 - 18765654
Alignment:
Q  58 tattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagt 112  Q
    |||||||||||| |||||| ||||||||||| ||| |||||||| ||||||||||    
T  18765708 tattttagttaaccatcgtaaaactagagaagtatgcataggaaataggtgcagt 18765654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 23044163 - 23044303
Alignment:
Q  23 agaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaatta 122  Q
    |||| |||||||||| |||||| |||||||| | ||||||| |||||  ||||||||||||  |||  ||||||| ||| |||||||||| ||| |||||    
T  23044163 agaagagggtcctaactcaaggcattgattaagattatttt-gttaactatcgtgaaactactgaatcattcataagaa-taggtgcagtataccaatta 23044260  T
Q  123 tgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
     |||||  ||||  |||| |||||| ||  |||||||||||||    
T  23044261 ggggaacatagatgattcaaaagacctaaactcatctctctct 23044303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 22131249 - 22131400
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||||||| |||||  ||||||||||  |||||| |||||  |||||  ||||||||||  ||||||| ||| |||||||||| ||| |||    
T  22131249 tgagaagagggtcctaactcaagagattgattaggaatatttt-gttaactatcgtagaactagagaatcattcatacgaa-taggtgcagtataccaat 22131346  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttct 174  Q
    || |||||  | ||  ||||||||||| |  ||||||||||||| || ||||||    
T  22131347 taggggaacatcgatgattcgaaagacctgatctcatctctctccatattttct 22131400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 20055793 - 20055935
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| | |||||||| ||| || |||||||||| ||||||| |||||  |||||| ||||||| ||  ||||||| ||| |||||||||| ||| |||    
T  20055793 tgagaagacggtcctaactcacgggattgattaggattatttt-gttaactatcgtggaactagaaaatcattcataagaa-taggtgcagtataccaat 20055890  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    || |||||  ||||  ||||||||||| |  |||||| |||||||    
T  20055891 taggggaacatagatgattcgaaagacctcatctcatatctctct 20055935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 7271015 - 7271188
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| |||||||||   |||||| |||||  ||| || ||||||| ||  ||||||| ||    
T  7271015 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattagaactatttt-gttaactatcatggaactagaaaatcattcataaga 7271113  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  |||||| |||||  || ||||||||    
T  7271114 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatttctcttcatattttctaa 7271188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 17664551 - 17664710
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| ||  |||||||| |||| |||||||||| |||||| |||||||| |  |||||| |||||  |||||| |||||| |||  || ||||| |    
T  17664551 aggaattaggggttgtaatcttagaagagggtcctaactcaagggattgattatgactatttt-gttaactatcgtggaactagtgaatcatacatagaa 17664649  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctct 163  Q
      |||||||||| ||| ||||| |||||  |||| ||||| |||||| |  ||||||||||||    
T  17664650 --taggtgcagtataccaattaggggaacatagataattcaaaagacctgatctcatctctct 17664710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 41306650 - 41306506
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | ||| || |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  |||||||  |    
T  41306650 aggaattaggggctgtagtttgaaaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaaa 41306552  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagac 147  Q
    | |||||||||| ||| ||||| |||||  ||||  |||||||||||    
T  41306551 a-taggtgcagtataccaattaggggaacatagatgattcgaaagac 41306506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 8e-51; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 37739882 - 37739678
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| |||| ||||||||| || ||||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||||||| ||    
T  37739882 aggaattagggacagtaatctgataagagggtcctaagtcaagggattgattagggctattttagctaaccatcgtgaaactagagaaatattcataaga 37739783  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaactttattttctgatatttac 200  Q
      |||||||||||||| |||||  |||| |  ||  ||||||||||| |||||   |||| ||||||||||||||||||||||||||||||| || ||||    
T  37739782 cataggtgcagtgtaccaattagaggaactctgatgattcgaaagacctagtc---tctccctctatcttttctaaacaactttattttctgctacttac 37739686  T
Q  201 tttttatg 208  Q
    ||||||||    
T  37739685 tttttatg 37739678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 22172497 - 22172307
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||  ||||| ||| |||||||||||| |||||     
T  22172497 aggaattagggactgtaatctgagaagagggtcctaagtcaagggattgattatggctattttagttaactatcgttaaattagagaaatatttataggg 22172398  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaa-ctttattttc 190  Q
    | ||||| |||||| | || || |  || | |||| |||| |||||| ||||||||||||||| ||||||||| ||| || ||||||||||    
T  22172397 aataggtacagtgtgccaaataggaaaactcagaggattcaaaagacctagtctcatctctctatatcttttccaaaaaatctttattttc 22172307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 53094526 - 53094669
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| ||||||||||||||||| ||||||||||  |||||| ||||||||||||||||||||||||  |||| || ||| |||||||||| ||| |||    
T  53094526 tgagaagagggtcctaagtcaagggattgattaggcctatttt-gttaatcatcgtgaaactagagaatcattcgtaagaaataggtgcagtataccaat 53094624  T
Q  121 tatgggaatttagagaattcg-aaagacgtagtctcatctctctc 164  Q
    || ||||| |||||| ||| | |||||| |  |||||||||||||    
T  53094625 taggggaacttagaggatttgaaaagacctgatctcatctctctc 53094669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 33408420 - 33408279
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| ||||||||||||||||| ||||||||||| ||||||| |||| ||||||||||||||| ||  ||||||| ||| |||||||||| |||  ||    
T  33408420 tgagaagagggtcctaagtcaagggattgattagggctatttta-ttaaccatcgtgaaactagaaaatcattcataagaa-taggtgcagtataccgat 33408323  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctc 164  Q
    || ||||| |||||| ||||||||||| ||  |||||| |||||    
T  33408322 taggggaacttagaggattcgaaagacctaaactcatcactctc 33408279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 5677532 - 5677448
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactaga 85  Q
    |||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||  |||||||||||  |||||||||||||||    
T  5677532 aggaattagggactgtaatctgagaagatggtcctaagtcaagggattgattaggactattttagttagccatcgtgaaactaga 5677448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 8877603 - 8877462
Alignment:
Q  22 gagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaatt 121  Q
    ||||| || |||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||||   ||||||| ||| |||||||||| ||| || |    
T  8877603 gagaagagagtcctaagtcaagggattgattagggctatttt-gttaaccatcgtgaaactagagagtcattcataagaaataggtgcagtatactaaat 8877505  T
Q  122 atgggaatttagagaattcgaaagacgtagtctcatctctctc 164  Q
    | ||||| |||||  ||| ||||||| |  |||||||||||||    
T  8877504 aggggaacttagatgatttgaaagacctgatctcatctctctc 8877462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 18911497 - 18911656
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||||||  ||||||| ||    
T  18911497 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagagaatcattcataaga 18911595  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctc 162  Q
    | |||||||||| ||| ||||| |||||  ||||  |||| |||||| ||||||||||||||    
T  18911596 a-taggtgcagtataccaattaggggaacatagatgattcaaaagacctagtctcatctctc 18911656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 5706390 - 5706550
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagg-gttattttagttaatcatcgtgaaactagagaaatattcatagg 99  Q
    |||||||| ||||||||||||||||| || ||||||| |||||| ||||||||||  ||||||| |||||  |||||| ||||||| ||  ||||||| |    
T  5706390 aggaattagggactgtaatctgagaagagtgtcctaactcaagggattgattaggacttatttt-gttaactatcgtggaactagaaaatcattcataag 5706488  T
Q  100 aagtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctc 162  Q
    || |||||||||| ||| ||||| |||||  | ||  | ||||||||| ||||||||||||||    
T  5706489 aa-taggtgcagtataccaattaggggaacattgatgactcgaaagacctagtctcatctctc 5706550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 31 - 165
Target Start/End: Complemental strand, 48014161 - 48014027
Alignment:
Q  31 gtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaattatgggaatt 130  Q
    |||||||||||| | ||| ||| ||| ||||||||||||   |||| |||||||||||||||||||| ||  ||| ||| | |||| ||||| ||||| |    
T  48014161 gtcctaagtcaaaggatttattggggctattttagttaacattcgtaaaactagagaaatattcataagacatagatgcggagtaccaattaggggaact 48014062  T
Q  131 tagagaattcgaaagacgtagtctcatctctctct 165  Q
     |||| |||||||||||  ||||||||||||||||    
T  48014061 cagaggattcgaaagaccaagtctcatctctctct 48014027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 37103339 - 37103181
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||| ||||||||| | ||||||||||  |||||| |||||  |||||||||||||| ||  ||||||| ||    
T  37103339 aggaattaggggctgtagtttgagaagagggttctaagtcaaaggattgattaggactatttt-gttaactatcgtgaaactagaaaatcattcataaga 37103241  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctct 161  Q
    | |||||||||| ||| ||||| || ||  ||||  ||||||||||| |||||||||||||    
T  37103240 a-taggtgcagtataccaattagggaaacatagatgattcgaaagacttagtctcatctct 37103181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 40616931 - 40616769
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  40616931 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaagcattcataaga 40616833  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||||    
T  40616832 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctctct 40616769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 19820726 - 19820899
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||||||||||||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  19820726 aggaattaggggctgtagtttgagaagagggtcctaagtcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 19820824  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||||||| ||| ||||| |||||   |||  ||||||||||| |  ||||||||||||  || ||||||||    
T  19820825 a-taggtgcagtataccaattaggggaacaaagatgattcgaaagacctgatctcatctctcttcatattttctaa 19820899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 52006654 - 52006481
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||| |||||||||| |||||||| |  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  52006654 aggaattaggggctgtagtttgagaagagggtcttaagtcaagggattgattatgactatttt-gttaactatcgtggaactagaaaatcattcataaga 52006556  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| | |||||||||||||  || ||||||||    
T  52006555 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctggtctcatctctcttcatattttctaa 52006481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 12238264 - 12238423
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    ||||||||  |||||||||||||||| ||||| |||| |||||| |||||||| |  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  12238264 aggaattagagactgtaatctgagaagagggttctaactcaagggattgattatgactatttt-gttaactatcgtggaactagaaaatcattcataaga 12238362  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctc 162  Q
    | |||||||||| ||| ||||| |||||  | ||  | ||||||||| ||||||||||||||    
T  12238363 a-taggtgcagtataccaattaggggaacattgatgactcgaaagacctagtctcatctctc 12238423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 3797911 - 3797761
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||| ||| |||||| ||||||||||  |||||| |||||  |||||| |||||| |||  ||| ||| ||| |||||||||| ||| |||    
T  3797911 tgagaagagggtcttaactcaagggattgattaggactatttt-gttaactatcgtggaactagtgaatcattaataagaa-taggtgcagtataccaat 3797814  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttc 173  Q
    || |||||  ||||  ||||||||||| |  ||||||||||||||||||||||    
T  3797813 taggggaacatagatgattcgaaagacctgatctcatctctctctatcttttc 3797761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 5681426 - 5681596
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  5681426 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 5681524  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttc 173  Q
    | ||| | |||| ||| ||||| |||||  | ||  ||||||||||| ||||||||||||||  |||||||||    
T  5681525 a-tagtttcagtataccaattaagggaacatcgatgattcgaaagacctagtctcatctctccttatcttttc 5681596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 8874884 - 8874774
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || |||||||| ||||| ||||| |||||||||   |||||||| || |||||| ||||| |||| |||||||||||||  ||||||| ||    
T  8874884 aggaattaggggctgtaatcggagaagagggttctaagtcaatcgattgattatggctatttt-gttaaccatcttgaaactagagaatcattcataaga 8874786  T
Q  101 agtaggtgcagt 112  Q
    | ||||||||||    
T  8874785 aataggtgcagt 8874774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 40903206 - 40903033
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| || |||||||||||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  40903206 aggaattaagggctgtagtttgagaagagagtcctaagtcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 40903108  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||||||| ||| ||||| |||||  ||||  |||| |||||| |  ||||||||||||  || ||||||||    
T  40903107 a-taggtgcagtataccaattaggggaacatagatgattctaaagacctgatctcatctctcttcatattttctaa 40903033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 56195526 - 56195687
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||| |||||| |||||  |||||| ||||||| ||  ||| ||| ||    
T  56195526 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattagggctatttt-gttaactatcgtggaactagaaaatcattaatacga 56195624  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc 164  Q
    | |||||||||| ||| ||||| |||||  | ||  ||||||||||| |  |||||||||||||    
T  56195625 a-taggtgcagtataccaattaggggaacatcgatgattcgaaagacctgatctcatctctctc 56195687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 19859645 - 19859483
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| |||||||| |  ||||||| ||||| |||||| ||||||| ||  ||||||| ||    
T  19859645 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaagactatttta-ttaattatcgtggaactagaaaataattcataaga 19859547  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | || ||||||| ||| ||||| ||||   ||||  ||||||||||| |  ||||||||||||||    
T  19859546 a-tatgtgcagtataccaattaggggatcatagatgattcgaaagacctgatctcatctctctct 19859483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 24150691 - 24150833
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||| |||||||||| ||| |||    
T  24150691 tgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataagaa-taggtgcagtataccaat 24150788  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    || |||||   |||  ||||||||||| |  ||||||||||||||    
T  24150789 taggggaacacagatgattcgaaagacctgatctcatctctctct 24150833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 39501647 - 39501809
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | ||| || |||||||||| |||| | ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  39501647 aggaattaggggctgtagtttgataagagggtcctaactcaaaggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 39501745  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||||    
T  39501746 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctctct 39501809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 52531038 - 52530896
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| || |||| ||  ||||||| ||| |||||||||| ||| |||    
T  52531038 tgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaattagaaaatcattcataagaa-taggtgcagtataccaat 52530941  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    || |||||  ||||  ||||||||||| |  ||||||||||||||    
T  52530940 taggggaacatagatgattcgaaagacctgatctcatctctctct 52530896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 15405204 - 15405043
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||| | ||||||||||| |||||| |||||  |||||| ||||||| ||  ||| |||  |    
T  15405204 aggaattaggggctgtagtttgagaagagggtcctaactcaatggattgattagggctatttt-gttaactatcgtggaactagaaaatcattaata-ca 15405107  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc 164  Q
    | |||||||||| ||  ||||| ||||| |||||  ||||||||||| |  |||||||||||||    
T  15405106 aataggtgcagtatatcaattaggggaacttagatgattcgaaagacctgatctcatctctctc 15405043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 208
Target Start/End: Complemental strand, 34320020 - 34319832
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||||||| |||||| ||||||||||| |||||| |||||  |||||| || |||| ||  ||| ||| ||| |||||||||| ||| |||    
T  34320020 tgagaagagggtcctaactcaagggattgattagggctatttt-gttaactatcgtggaattagaaaatcattaatacgaa-taggtgcagtataccaat 34319923  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctc--tatctttt-ctaaacaactttattttctgatatttactttttatg 208  Q
    || |||||  | ||  ||||||||||| |  |||||||||||||  | |||||| | |||| |  |||||||||| |||||||||||||||    
T  34319922 taagggaacatcgatgattcgaaagacctgatctcatctctctccttgtcttttccaaaactatcttattttctgttatttactttttatg 34319832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 15432097 - 15432237
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||||||| |||||| |||||||||   |||||| |||||  ||||||  |||||||||  ||||||| ||| |||||||||| ||| |||    
T  15432097 tgagaagagggtcctaactcaagggattgattagaactatttt-gttaactatcgtggtactagagaatcattcataagaa-taggtgcagtataccaat 15432194  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctct 163  Q
    || |||||  | ||  | ||||||||| |||||||||||||||    
T  15432195 taggggaacatcgatgactcgaaagacctagtctcatctctct 15432237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 27014282 - 27014422
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||| ||| |||| | ||||||||||  |||||| |||||  |||||||||||||| ||  ||||||| ||| |||||||||| ||| |||    
T  27014282 tgagaagagggtcttaactcaaaggattgattaggactatttt-gttaactatcgtgaaactagaaaatcattcataagaa-taggtgcagtataccaat 27014379  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctct 163  Q
    || |||||  ||||  ||||||||||| |  ||||||||||||    
T  27014380 taggggaacatagatgattcgaaagacctgatctcatctctct 27014422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 33493818 - 33493729
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaa--tcatcgtgaaactagagaa 88  Q
    |||||||| ||||||||||||||||| | |||||||||| |||| ||| | ||||  ||||||||||||  | ||||| |||||||||||    
T  33493818 aggaattagggactgtaatctgagaagatggtcctaagttaaggaattaaataggactattttagttaactttatcgtaaaactagagaa 33493729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 39498346 - 39498470
Alignment:
Q  39 tcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaattatgggaatttagagaat 138  Q
    |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||| |||||||||| ||| ||||| ||||| |||||  ||    
T  39498346 tcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataagaa-taggtgcagtataccaattaggggaacttagatgat 39498443  T
Q  139 tcgaaagacgtagtctcatctctctct 165  Q
    ||||||||| |  ||||||||||||||    
T  39498444 tcgaaagacctgatctcatctctctct 39498470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 176
Target Start/End: Complemental strand, 24044261 - 24044091
Alignment:
Q  4 aattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagt 103  Q
    ||||| || ||||| | |||||| || |||||||||||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||| |    
T  24044261 aattaggggctgtagtttgagaagagtgtcctaagtcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataagaa-t 24044164  T
Q  104 aggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    ||||| ||| ||| ||||| |||||  |||| ||||  |||||| |  ||||||||||||  || ||||||||    
T  24044163 aggtgtagtataccaattaggggaacatagataatttcaaagacctgatctcatctctcttcatattttctaa 24044091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 34017904 - 34017742
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||| |||| |||||| |||||||| |  |||||| |||||  |||||| ||| ||| ||  ||||||| ||    
T  34017904 aggaattaggggctgtagtttgagaagagggttctaactcaagggattgattaagactatttt-gttaactatcgtggaaccagaaaatcattcataaga 34017806  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||||    
T  34017805 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctctct 34017742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 44809078 - 44808995
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactaga 85  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||| |||||| |||||  |||||| |||||||    
T  44809078 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattagggctatttt-gttaactatcgtggaactaga 44808995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 48637504 - 48637666
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| || |||| ||  ||||||| |     
T  48637504 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaattagaaaatcattcataagc 48637602  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| || ||  ||||  ||||||||||| |  ||||||||||||||    
T  48637603 a-taggtgcagtataccaattagggaaacatagatgattcgaaagacctgatctcatctctctct 48637666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 33926971 - 33927132
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | | |||| |||||||||| |||||| |||||||| || |||||| |||||  |||||| ||||||| ||  ||| ||| ||    
T  33926971 aggaattaggggctgtagttttagaagagggtcctaactcaagggattgattatggctatttt-gttaactatcgtggaactagaaaatcattaatacga 33927069  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc 164  Q
    | |||||||||| ||| ||||| |||||  | ||  ||||||||||| |  |||||||||||||    
T  33927070 a-taggtgcagtataccaattaggggaacatcgatgattcgaaagacctgatctcatctctctc 33927132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 11195696 - 11195836
Alignment:
Q  23 agaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaatta 122  Q
    |||| |||||||||| |||||| ||||||||||  | |||| |||||  |||||| |||||| |||  ||||||| ||| || ||||||| ||| |||||    
T  11195696 agaagagggtcctaactcaagggattgattaggactgtttt-gttaactatcgtggaactagtgaatcattcataagaa-tatgtgcagtataccaatta 11195793  T
Q  123 tgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
     |||||  ||||  ||||||||||| ||  |||||||||||||    
T  11195794 ggggaacatagatgattcgaaagacctaaactcatctctctct 11195836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 12782923 - 12782957
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagg 55  Q
    |||||||||||||||||||||||| ||||||||||    
T  12782923 tgagaaaagggtcctaagtcaagggattgattagg 12782957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 27677178 - 27677059
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||| ||||||||||| ||||||||||  |||||| |||||  || ||| ||||||| ||  ||||||| ||    
T  27677178 aggaattaggggctgtagtttgagaagagggttctaagtcaagggattgattaggactatttt-gttaactatggtggaactagaaaatcattcataaga 27677080  T
Q  101 agtaggtgcagtgtacaaatta 122  Q
    | |||||||||| ||| |||||    
T  27677079 a-taggtgcagtataccaatta 27677059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 5670576 - 5670738
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| |||||||| |  |||||| |||||  |||||| ||||||| ||  ||||| | ||    
T  5670576 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattatgactatttt-gttaactatcgtggaactagaaaagcattcacaaga 5670674  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | || ||||||| ||| ||||| |||||  ||||  ||||||||||| |  || |||||||||||    
T  5670675 a-tatgtgcagtataccaattaggggaacatagatgattcgaaagacctgatcgcatctctctct 5670738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 5672894 - 5673056
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| |||||||| |  |||||| |||||  |||||| ||||||| ||  ||||| | ||    
T  5672894 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattatgactatttt-gttaactatcgtggaactagaaaagcattcacaaga 5672992  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | || ||||||| ||| ||||| |||||  ||||  ||||||||||| |  || |||||||||||    
T  5672993 a-tatgtgcagtataccaattaggggaacatagatgattcgaaagacctgatcgcatctctctct 5673056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15446859 - 15446807
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgatta 53  Q
    |||||||| || ||||| | |||||| ||||||||||||||||| ||||||||    
T  15446859 aggaattaggggctgtagtttgagaagagggtcctaagtcaagggattgatta 15446807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 29324824 - 29324907
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactaga 85  Q
    |||||||| || ||||| | |||||||| |||| ||| |||||| ||||||||||| |||||| |||||  |||||| |||||||    
T  29324824 aggaattaggggctgtagtttgagaaaatggtcataactcaagggattgattagggctatttt-gttaactatcgtggaactaga 29324907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44164781 - 44164833
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgatta 53  Q
    |||||||| ||| |||| | |||||| ||||||||||||||||| ||||||||    
T  44164781 aggaattagggattgtagtttgagaagagggtcctaagtcaagggattgatta 44164833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 185
Target Start/End: Complemental strand, 48013983 - 48013955
Alignment:
Q  157 tctctctctatcttttctaaacaacttta 185  Q
    |||||||||||||||||||||||||||||    
T  48013983 tctctctctatcttttctaaacaacttta 48013955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 9938 - 10146
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||| ||||| |||||||||| |||||||||||||  ||||    
T  9938 aggaattagggactctaatctgagaagagggtcctaagtcaagggattgattagggctattttggttaaccatcgtgaaattagagaaatattcgaagga 10037  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaa-ctttattttctgatattta 199  Q
    | |||||||||||||| ||||| ||||| | |||| |||| |||||| ||||||||||||||  ||||||||| ||||||  |||| ||| || ||||||    
T  10038 aataggtgcagtgtaccaattaggggaactcagaggattcaaaagacatagtctcatctctccttatcttttccaaacaatatttaatttatgttattta 10137  T
Q  200 ctttttatg 208  Q
    |||||||||    
T  10138 ctttttatg 10146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 5796538 - 5796746
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    ||||||||  || |||||| ||| || ||||||||||||||||| ||||||||| | ||||||||||| ||||| ||||||||||||| ||||| || ||    
T  5796538 aggaattagagattgtaatatgataagagggtcctaagtcaagggattgattagagctattttagttagtcatcatgaaactagagaattattcttaaga 5796637  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaac-aactttattttctgatattta 199  Q
    | ||||||  |||||| ||||| |||||   | || | ||||||||| ||||||||||||||  |||||||||||||| |||||||||||||| ||||||    
T  5796638 aataggtgttgtgtaccaattaggggaacccaaaggactcgaaagacttagtctcatctctccatatcttttctaaacaaactttattttctgttattta 5796737  T
Q  200 ctttttatg 208  Q
    |||||||||    
T  5796738 ctttttatg 5796746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 18562661 - 18562468
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| |||||||||| |||||| || |||||||||||| | ||| || |||| ||||||||||||  ||||| ||||||||||| |||||||| ||    
T  18562661 aggaattagggactgtaatatgagaagagagtcctaagtcaaaggattaatcagggctattttagttaactatcgtaaaactagagaagtattcataaga 18562562  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaa--ctttattttctg 192  Q
    |||||||||| ||||  ||||| || || | |||| |||  |||||| | ||||||||||||||||| |||||||| |||  ||||||||||||    
T  18562561 agtaggtgcaatgtatcaattagggaaactcagaggattttaaagacatggtctcatctctctctatattttctaatcaaatctttattttctg 18562468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 13809632 - 13809472
Alignment:
Q  14 tgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtg 113  Q
    |||||| |||||| ||||||||||||||||| |||||| |||| |||||| ||||| ||||||||||||||||||  |||| ||  || ||||||||||     
T  13809632 tgtaatatgagaagagggtcctaagtcaagggattgatcagggctatttt-gttaaccatcgtgaaactagagaatcattcgtaataaataggtgcagta 13809534  T
Q  114 tacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    ||| ||||| ||||| | |||| ||||||||||| |  |||||||||||||||| ||||||||    
T  13809533 taccaattaagggaa-tcagaggattcgaaagacttgatctcatctctctctatattttctaa 13809472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 48645460 - 48645663
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||| |||||| ||||| ||||||||||||||| ||  ||||||| ||    
T  48645460 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattagggctatttt-gttaaccatcgtgaaactagaaaatcattcataaga 48645558  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaac--aactttattttctgatattt 198  Q
    | |||||||||| ||| ||||| |||||  | ||  ||||||||||  ||||||||||||||  ||| ||||| ||||  | |||||||||||| |||||    
T  48645559 a-taggtgcagtataccaattaggggaacatcgatgattcgaaagatctagtctcatctctccatatattttccaaacatatctttattttctgttattt 48645657  T
Q  199 actttt 204  Q
    ||||||    
T  48645658 actttt 48645663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 5242279 - 5242116
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| |||||||| ||||||||||||||||| |||| ||| || |||||| ||||| ||| ||||||||||||||  |||| || ||    
T  5242279 aggaattaggggctgtagtctgagaatagggtcctaagtcaagggattggttatggatatttt-gttaaccatagtgaaactagagaatcattcgtaaga 5242181  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| ||||| | |||  ||||||||||| |  ||||||||||||||    
T  5242180 aataggtgcagtataccaattaagggaactcagaagattcgaaagacctgatctcatctctctct 5242116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 7227526 - 7227624
Alignment:
Q  13 ctgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagt 112  Q
    |||||||  ||||| ||||||||||||||||| |||||||| ||||||||| ||||| ||||||||||||||||||  |||| || ||| ||||||||||    
T  7227526 ctgtaattggagaatagggtcctaagtcaagggattgattatggttatttt-gttaaccatcgtgaaactagagaatcattcgtaagaaataggtgcagt 7227624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 20594249 - 20594422
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||||||||||||||| ||||||||||  |||||| |||||  |||||||||||||| ||  ||||||| ||    
T  20594249 aggaattaggggctgtagtttgagaagagggtcctaagtcaagggattgattaggactatttt-gttaactatcgtgaaactagaaaatcattcataaga 20594347  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | || ||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  20594348 a-tacgtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 20594422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 45290608 - 45290446
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||| |||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  45290608 aggaattaggggctgtagtttgagaagagggttctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 45290510  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| || ||||||||||||||    
T  45290509 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctaatctcatctctctct 45290446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 16165735 - 16165943
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || |||||||||||||| |||||||||| |||||| ||||||||||| |||||| |||||  |||||  || |||||||  ||| |||  |    
T  16165735 aggaattaggggctgtaatctgagaagagggtcctaactcaagggattgattagggctatttt-gttaactatcgttgaattagagaatcattaata-ca 16165832  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc--tatctttt-ctaaacaactttattttctgatatt 197  Q
    | |||||||||| ||| ||||| |||||  | ||  ||||||||||| |  |||||||||||||  | |||||| | |||| |  |||||||||| ||||    
T  16165833 aataggtgcagtataccaattaggggaacatcgatgattcgaaagacctgatctcatctctctccttgtcttttccaaaactatcttattttctgttatt 16165932  T
Q  198 tactttttatg 208  Q
    |||||||||||    
T  16165933 tactttttatg 16165943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 4695494 - 4695625
Alignment:
Q  28 agggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaattatggga 127  Q
    ||||||||||||||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||| ||| ||| |||||||||| ||| ||||| ||||    
T  4695494 agggtcctaagtcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattgataagaa-taggtgcagtataccaattagggga 4695591  T
Q  128 atttagagaattcgaaagacgtagtctcatctct 161  Q
    || ||||  ||||||||||| | |||||||||||    
T  4695592 atatagatgattcgaaagacctggtctcatctct 4695625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 23225033 - 23224871
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  23225033 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 23224935  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | || ||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||||    
T  23224934 a-tatgtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctctct 23224871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 45287197 - 45287035
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||| |||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  45287197 aggaattaggggctgtagtttgagaagagggttctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 45287099  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| || ||  ||||  ||||||||||| || ||||||||||||||    
T  45287098 a-taggtgcagtataccaattagggaaacatagatgattcgaaagacctaatctcatctctctct 45287035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 4546855 - 4546964
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||||||||||||||| |||||||||| ||||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  4546855 aggaattaggggctgtagtttgagaagagggtcctaagtcaagggattgattaggattatttt-gttaactatcgtggaactagaaaatcattcataaga 4546953  T
Q  101 agtaggtgcagt 112  Q
    | ||||||||||    
T  4546954 a-taggtgcagt 4546964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 13842626 - 13842788
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||| | |||||||||| |||||| ||||||||||| |||||| |||||  |||||| || |||| ||  ||| ||| ||    
T  13842626 aggaattaggggctgtagtttgaggagagggtcctaattcaagggattgattagggctatttt-gttaactatcgtggaattagaaaatcattaatacga 13842724  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||| | ||  ||||||||||| |  ||||||||||||||    
T  13842725 a-taggtgcagtataccaattacgggaatatcgatgattcgaaagacctgatctcatctctctct 13842788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 2441406 - 2441202
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| |||||||| | |||||| |||||||||| |||||| ||||||||||| |||||| |||||  |||||  || |||| ||  ||| ||| ||    
T  2441406 aggaattagggactgtagtttgagaagagggtcctaactcaagggattgattagggctatttt-gttaactatcgtagaattagaaaatcattaatacga 2441308  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc--tatcttttctaaac-aactttattttctgatatt 197  Q
    | |||||||||| ||| ||||| | |||  | ||  ||||||||||| |  |||||||||||||  ||| ||| | |||| | |||||||||||| ||||    
T  2441307 a-taggtgcagtataccaattaggagaacatcgatgattcgaaagacctgatctcatctctctccttatttttccaaaactatctttattttctgttatt 2441209  T
Q  198 tactttt 204  Q
    |||||||    
T  2441208 tactttt 2441202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 4542783 - 4542956
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||| ||| ||||||| |||||||||  ||||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  4542783 aggaattaggggctgtagtttgagaagagggttctaggtcaagggattgattagaattatttt-gttaactatcgtggaactagaaaatcattcataaga 4542881  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||| ||||| |  ||||||||||||  || ||||||||    
T  4542882 a-taggtgcagtataccaattaggggaacatagatgattcggaagacctgatctcatctctcttcatattttctaa 4542956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 11919993 - 11919820
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| ||||   |||||| ||||||| ||  ||||||| ||    
T  11919993 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttacctatcgtggaactagaaaatcattcataaga 11919895  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||| ||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  11919894 a-taggtgtagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 11919820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 17730820 - 17730973
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||||||||| |||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||| |||||||||| ||| |||    
T  17730820 tgagaagagggtcctaagttaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataagaa-taggtgcagtataccaat 17730917  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    || || ||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  17730918 tagggaaacatagatgattcgaaagacatgatctcatctctcttcatattttctaa 17730973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 165
Target Start/End: Complemental strand, 37415550 - 37415389
Alignment:
Q  2 ggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaa 101  Q
    ||||||| || ||||| | |||||| ||||| |||| |||||  ||||||||||  |||||| |||||  ||| || ||||||||||  ||||||| |||    
T  37415550 ggaattaggggctgtagtttgagaagagggttctaactcaagagattgattaggactatttt-gttaactatcatggaactagagaatcattcataagaa 37415452  T
Q  102 gtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
     |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||||    
T  37415451 -taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctctct 37415389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 14683571 - 14683412
Alignment:
Q  2 ggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaa 101  Q
    ||||||| || ||||||||  |||| |||||||||| |||||| |||||||| |  |||||| |||||  |||||| |||||| |||  ||||||| |||    
T  14683571 ggaattaggggctgtaatcctagaagagggtcctaactcaagggattgattatgactatttt-gttaactatcgtggaactagtgaatcattcataagaa 14683473  T
Q  102 gtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctct 163  Q
     ||| |||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||    
T  14683472 -tagatgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctct 14683412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 6603448 - 6603570
Alignment:
Q  4 aattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagt 103  Q
    ||||| || ||||| | |||||| |||||||||| |||||| ||||||||||| |||||| |||||  |||||| ||||||| ||  ||| ||| ||| |    
T  6603448 aattaggggctgtagtttgagaagagggtcctaactcaagggattgattagggctatttt-gttaactatcgtggaactagaaaatcattaatacgaa-t 6603545  T
Q  104 aggtgcagtgtacaaattatgggaa 128  Q
    ||||||||| ||| ||||| |||||    
T  6603546 aggtgcagtataccaattaggggaa 6603570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 9864854 - 9864771
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactaga 85  Q
    |||||||||||  |||| | |||||| |||||||||| |||||| ||||||||||| |||||| |||||  |||||| |||||||    
T  9864854 aggaattatgggttgtagtttgagaagagggtcctaactcaagggattgattagggctatttt-gttaactatcgtggaactaga 9864771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 4868249 - 4868420
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||||| ||||||||| ||||| ||||||||||||||||| ||||||||||| || ||||||||| ||||||||||||| || | |||| ||||||    
T  4868249 aggaattatgaactgtaatccgagaagagggtcctaagtcaagggattgattagggcta-tttagttaaccatcgtgaaactataggagtattaatagga 4868347  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttc 173  Q
    | |||||||||| ||| ||  |||| |  |  ||| ||||||||||| ||||||||||||| | |||||||||    
T  4868348 aataggtgcagtataccaaacatggaacatcggaggattcgaaagacctagtctcatctctatatatcttttc 4868420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 30784915 - 30785078
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    ||||||||  |||||||||| ||||| ||||||||| ||| | | |||||||||||||||||| |||||  |||||||||||||||||  |||| || ||    
T  30784915 aggaattagagactgtaatccgagaagagggtcctacgtccatggattgattagggttatttt-gttaactatcgtgaaactagagaatcattcgtaaga 30785013  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | ||||| || | ||| ||||| ||||| |||||| ||||||||||| |  ||||| ||||||||    
T  30785014 aataggtacaatataccaattaggggaacttagaggattcgaaagacctgatctcacctctctct 30785078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 16953773 - 16953935
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  16953773 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 16953871  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||||    
T  16953872 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctctct 16953935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 25594780 - 25594620
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    ||||||||||| ||||| | |||||| || ||| ||| |||||| ||||||||||  |||||| |||||  |||||||||||||| ||  ||||||| ||    
T  25594780 aggaattatgggctgtagtttgagaagagagtcttaactcaagggattgattaggactatttt-gttaactatcgtgaaactagaaaatcattcataaga 25594682  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctct 163  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||    
T  25594681 a-taggtgcagtatactaattaggggaagatagatgattcgaaagacctgatctcatctctct 25594620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 161
Target Start/End: Complemental strand, 18721401 - 18721246
Alignment:
Q  4 aattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagt 103  Q
    ||||| || ||||| | |||||| || ||| ||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||| |    
T  18721401 aattaggggctgtagtatgagaagagagtcataactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataagaa-t 18721304  T
Q  104 aggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctct 161  Q
    ||||||||| ||| ||||| |||||  ||||  ||||||||||| |||||||||||||    
T  18721303 aggtgcagtataccaattaggggaacatagatgattcgaaagacctagtctcatctct 18721246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 5613825 - 5613668
Alignment:
Q  16 taatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgta 115  Q
    ||||||||||| ||||||||||||||||| ||| ||||||  |||| | |||||  |||||||||||||||||  ||||||| ||| || |||  ||||     
T  5613825 taatctgagaagagggtcctaagtcaagggatttattaggactattat-gttaactatcgtgaaactagagaatcattcataagaa-tatgtgatgtgtg 5613728  T
Q  116 caaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | ||||| |||||   |||| ||||||||||| |  ||||||||||||| || ||||||||    
T  5613727 ccaattaggggaa-acagaggattcgaaagacctgatctcatctctctccatattttctaa 5613668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 25231097 - 25231239
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||||||| |||||| |||||||| |  |||||| |||||  |||||| ||||||||||  ||||||| ||| |||||||||| ||| |||    
T  25231097 tgagaagagggtcctaactcaagggattgattaagactatttt-gttaactatcgtggaactagagaatcattcataagaa-taggtgcagtataccaat 25231194  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    || |||||  ||||  ||||||||||| |  ||||| ||||||||    
T  25231195 taggggaacatagatgattcgaaagacctgatctcaactctctct 25231239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 33883453 - 33883265
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| ||||| |||| |||||| |||||||| |  |||||| |||||  |||||| ||||||||||  ||||||| ||| |||||||||| ||| |||    
T  33883453 tgagaagagggttctaactcaagggattgattatgactatttt-gttaactatcgtggaactagagaatcattcataagaa-taggtgcagtataccaat 33883356  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctct--atcttttctaaac--aactttattttctgatatttactttttat 207  Q
    || || ||  ||||  ||||||||||| ||  |||| ||||||||  |||||||| |||   | |||||||||||| ||||||||||||||    
T  33883355 tagggaaacatagatgattcgaaagacttaaactcacctctctctttatcttttccaaaactatctttattttctgttatttactttttat 33883265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 18826010 - 18825849
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||| |||||| |||||  |||||| |||||||  |  ||| ||| ||    
T  18826010 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattagggctatttt-gttaactatcgtggaactagaagatcattaatacga 18825912  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc 164  Q
    | |||||||||| ||| ||||| |||||  | ||  ||||||||||| |  |||||||||||||    
T  18825911 a-taggtgcagtataccaattaggggaacatcgatgattcgaaagacctgatctcatctctctc 18825849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 36710739 - 36710598
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||||||| |||||| ||||||||||| |||||| |||||  |||||| ||||||| ||  ||| ||| ||| |||||||||| ||| |||    
T  36710739 tgagaagagggtcctaactcaagggattgattagggctatttt-gttaactatcgtggaactagaaaatcattaatacgaa-taggtgcagtataccaat 36710642  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctc 164  Q
    || |||||  | ||  ||||||||||| |  |||||||||||||    
T  36710641 taggggaacatcgatgattcgaaagacctgatctcatctctctc 36710598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 33419674 - 33419814
Alignment:
Q  23 agaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaatta 122  Q
    |||| |||||||||| |||||| |||||||| |  |||||| |||||  |||||| |||||| |||  ||||||| ||| |||||||||| |||||||||    
T  33419674 agaagagggtcctaactcaagggattgattatgaatatttt-gttaactatcgtggaactagtgaatcattcataagaa-taggtgcagtatacaaatta 33419771  T
Q  123 tgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
     |||||  || |  ||||||||||| ||  |||||||||||||    
T  33419772 ggggaacataaatgattcgaaagacctaaactcatctctctct 33419814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 10498337 - 10498175
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || |||||| |  |||| |||||||||| |||||| ||||||||||  |||||| |||||  ||||| ||||||| ||   ||||| | ||    
T  10498337 aggaattaggggctgtaaccctagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtaaaactagggactcattcacaaga 10498239  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| ||  |||||||||||||    
T  10498238 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctaaactcatctctctct 10498175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 12583024 - 12583180
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| ||||||||||||||||| ||||||||||  |||||| || ||  |||||| ||||||| ||  ||||||| ||| |||||||||| ||| |||    
T  12583024 tgagaagagggtcctaagtcaagggattgattaggactatttt-gtcaactatcgtggaactagaaaatcattcataagaa-taggtgcagtataccaat 12583121  T
Q  121 tatgggaatttag---agaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    || |||||  |||   |  ||||||||||| | |||||||||||||  || ||||||||    
T  12583122 taggggaacatagatcatgattcgaaagacctggtctcatctctcttcatattttctaa 12583180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 17930977 - 17931139
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||| ||| |||||| |||||||| |  |||||| |||||  |||||| ||||||||||  ||||||| ||    
T  17930977 aggaattaggggctgtagtttgagaagagggtcgtaactcaagggattgattaagactatttt-gttaactatcgtggaactagagaatcattcataaga 17931075  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||| | ||| ||||| || ||  | ||  ||||||||||| || ||||||||||||||    
T  17931076 a-taggtgcaatataccaattacggaaacatcgatgattcgaaagacctaatctcatctctctct 17931139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 18824517 - 18824434
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactaga 85  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||| |||||| |||||  |||||| |||||||    
T  18824517 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattagggctatttt-gttaactatcgtggaactaga 18824434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 182
Target Start/End: Complemental strand, 5980433 - 5980258
Alignment:
Q  4 aattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagt 103  Q
    ||||| |||||||| | |||||| |||||||||| |||||| |||||||| |  |||||| |||||  || ||| ||||||| ||  || |||| ||| |    
T  5980433 aattacggactgtagtttgagaagagggtcctaactcaagggattgattatgactatttt-gttaactattgtggaactagaaaatcatccataagaa-t 5980336  T
Q  104 aggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaact 182  Q
    ||||| ||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||| || |||||||| |||||    
T  5980335 aggtgtagtataccaattaagggaacatagatgattcgaaagacatgatctcatctctctc-atattttctaatcaact 5980258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 25591602 - 25591442
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| || ||| ||| |||||| ||||||||||  |||||| |||||  |||||||||||||| ||  |||||||  |    
T  25591602 aggaattaggggctgtagtttgagaagagagtcttaactcaagggattgattaggactatttt-gttaactatcgtgaaactagaaaatcattcataaaa 25591504  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctct 163  Q
    | |||||||||| ||| ||||| |||||  ||||  |||||||| || |  ||||||||||||    
T  25591503 a-taggtgcagtataccaattaggggaacatagatgattcgaaacacctgatctcatctctct 25591442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 23643828 - 23643911
Alignment:
Q  13 ctgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcata 97  Q
    |||||||||||||| |||||| ||| |||||  ||||||||||  |||||| |||||  |||||| ||||||||||  |||||||    
T  23643828 ctgtaatctgagaagagggtcataactcaagagattgattaggactatttt-gttaactatcgtggaactagagaatcattcata 23643911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 48526 - 48349
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| |||| |||||||||||| ||||||||| ||||||| |||||||| |  |||||||||| | ||||||||||||||||||||||| ||||||    
T  48526 aggaattagggaccgtaatctgagaagagggtcctacgtcaagggattgattatgactattttagttgaccatcgtgaaactagagaaatatttatagga 48427  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaac 181  Q
    | |||||||||| ||| ||  ||   || | |||| ||| ||| ||| ||||||||||||||  ||| |||||||||||||    
T  48426 aataggtgcagtatactaaaaat---aaatcagaggatttgaatgacctagtctcatctctccatatattttctaaacaac 48349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 198166 - 198319
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| ||||||||||||||||| ||||||||||  |||||| |||||  |||||| ||||||| || |||||||| ||| |||||||||| ||| |||    
T  198166 tgagaagagggtcctaagtcaagggattgattaggactatttt-gttaactatcgtggaactagaaaattattcataagaa-taggtgcagtataccaat 198263  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    || |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  198264 taggggaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 198319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0962 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0962
Description:

Target: scaffold0962; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 3405 - 3246
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| |||||||||| |||||| ||||| |||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  3405 aggaattagggactgtaatatgagaagagggttctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 3307  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctc 162  Q
    | |||||||| | ||| |||||||||||  | ||  | ||||||||| ||||||||||||||    
T  3306 a-taggtgcattataccaattatgggaacattgatgactcgaaagacctagtctcatctctc 3246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 62516 - 62717
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  62516 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 62614  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaaacaa-ctttattttctgatattta 199  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  |||| ||||||| | ||||| | |||| | |||||||||||| ||||||    
T  62615 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacctgatctc-tctctctttttctttccaaaactatctttattttctgttattta 62712  T
Q  200 ctttt 204  Q
    |||||    
T  62713 ctttt 62717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 293022 - 293184
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||| |||| |||||| ||||||||||  |||||| |||||  |||||| ||||||||||  ||||||| ||    
T  293022 aggaattaggggctgtagtttgagaagagggttctaactcaagggattgattaggactatttt-gttaactatcgtggaactagagaatcattcataaga 293120  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||||    
T  293121 a-taggtgcagtataccaattaggggaacatagatgattcgaaagacttgatctcatctctctct 293184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0412 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 165
Target Start/End: Original strand, 133 - 292
Alignment:
Q  4 aattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagt 103  Q
    ||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||| |    
T  133 aattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataagaa-t 230  T
Q  104 aggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    ||||||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||||    
T  231 aggtgcagtataccaattaggggaacatagatgattcgaaagacttgatctcatctctctct 292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 3911 - 3749
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||||||| |||||| ||||||||||  |||||| |||||  |||||| ||||||| ||  ||||||| ||    
T  3911 aggaattaggggctgtagtttgagaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtggaactagaaaatcattcataaga 3813  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| ||||| || ||  ||||  ||||||||||| |  ||||||||||||||    
T  3812 a-taggtgcagtataccaattagggtaacatagatgattcgaaagacctgatctcatctctctct 3749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 118568 - 118367
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    ||||||||| |||||||| | | ||| ||||||||||||||||| ||||||||| | |||||| |||||  ||| ||||||||| |||  ||||||| ||    
T  118568 aggaattatagactgtaacccgcgaagagggtcctaagtcaagggattgattagtgctatttt-gttaactatcctgaaactagcgaatcattcataaga 118470  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttcta-aacaactttattttctgatattta 199  Q
    | ||||||||||| || ||||| |||||   |||| ||||||||||| |  | |||||||||   |||||||| | ||| |  |||||||||| ||||||    
T  118469 a-taggtgcagtggaccaattaagggaa-acagaggattcgaaagacctgatatcatctctcctcatcttttccagaactatcttattttctgttattta 118372  T
Q  200 ctttt 204  Q
    |||||    
T  118371 ctttt 118367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 5351 - 5524
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| ||||||||||||||||| ||||||||||  |||||| |||||  |||||| ||||| | ||  ||||||| ||    
T  5351 aggaattaggggctgtagtttgagaagagggtcctaagtcaagggattgattaggactatttt-gttaactatcgtggaactaaaaaatcattcataaga 5449  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | |||||||| | ||  ||||| |||||| ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  5450 a-taggtgcactatatcaattaggggaatatagatgattcgaaagacctgatctcatctctcttcatattttctaa 5524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 89769 - 89930
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| || ||||||| |||||| ||||||||||| |||||| |||||  |||||| ||||||| ||  ||| ||| ||    
T  89769 aggaattaggggctgtagtttgagaagagagtcctaactcaagggattgattagggctatttt-gttaactatcgtggaactagaaaatcattaatacga 89867  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc 164  Q
    | || ||||||| ||| ||||| ||||| |||||  ||||||||||| |  |||||||||||||    
T  89868 a-tatgtgcagtataccaattaggggaacttagatgattcgaaagacctgatctcatctctctc 89930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 27108 - 27281
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| |||||| |||||||| | ||||||||||  |||||| |||||  ||| || ||||||||||  ||||||| ||    
T  27108 aggaattaggggctgtagtttgagaagagggtcttaagtcaatggattgattaggactatttt-gttaactatcatggaactagagaatcattcataaga 27206  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | ||| |||||| ||| ||||| |||||  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  27207 a-tagatgcagtataccaattaggggaacatagatgattcgaaagacctgatctcatctctcttcatattttctaa 27281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 5501 - 5361
Alignment:
Q  21 tgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaat 120  Q
    |||||| |||||| ||| |||| | ||||||||||  |||||| |||||  |||||||||||||| ||  ||||||| ||| |||||||||| ||| |||    
T  5501 tgagaagagggtcttaactcaaaggattgattaggactatttt-gttaactatcgtgaaactagaaaatcattcataagaa-taggtgcagtataccaat 5404  T
Q  121 tatgggaatttagagaattcgaaagacgtagtctcatctctct 163  Q
    || |||||  ||||  ||||||||||| |  ||||||||||||    
T  5403 taggggaacatagatgattcgaaagacctgatctcatctctct 5361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 19395 - 19557
Alignment:
Q  1 aggaattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcatagga 100  Q
    |||||||| || ||||| | |||||| || || |||| |||||| |||||||| |  |||||| |||||  |||||| ||||||||||  ||||||| ||    
T  19395 aggaattaggggctgtagtttgagaagagagttctaactcaagggattgattatgactatttt-gttaactatcgtggaactagagaatcattcataaga 19493  T
Q  101 agtaggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
    | |||||||||| ||| |||||  ||||  ||||  ||||||||||| |  ||||||||||||||    
T  19494 a-taggtgcagtataccaattagaggaacatagatgattcgaaagacctgatctcatctctctct 19557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 29386 - 29526
Alignment:
Q  23 agaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaatta 122  Q
    |||| |||||||||| |||||| ||||||||||  |||||| |||||  ||||| ||||||| ||   ||||| | ||| |||||||||| || ||||||    
T  29386 agaagagggtcctaactcaagggattgattaggactatttt-gttaactatcgtaaaactagggactcattcacaagaa-taggtgcagtataaaaatta 29483  T
Q  123 tgggaatttagagaattcgaaagacgtagtctcatctctctct 165  Q
     |||||  ||||  ||||||||||| ||  |||||||||||||    
T  29484 ggggaacatagatgattcgaaagacctaaactcatctctctct 29526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1755 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1755
Description:

Target: scaffold1755; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 176
Target Start/End: Original strand, 123 - 293
Alignment:
Q  4 aattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagt 103  Q
    ||||| |||||| | | |||||| |||||||||| |||||| ||||||||||  ||| || |||||  |||||| ||||||| ||  ||||||| ||| |    
T  123 aattagggactgaagtttgagaagagggtcctaactcaagggattgattaggactatgtt-gttaactatcgtggaactagaaaatcattcataagaa-t 220  T
Q  104 aggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    | ||||||| ||| ||||| |||||  || |  ||||||||||| |  ||||||||||||  || ||||||||    
T  221 atgtgcagtataccaattaggggaacatatatgattcgaaagacctgatctcatctctcttcatattttctaa 293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 183 - 25
Alignment:
Q  4 aattatggactgtaatctgagaaaagggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagt 103  Q
    ||||| || ||||| | |||||| |||||||||| |||||| ||| ||||||| |||||| |||||  |||||| || |||| ||  ||| ||| ||| |    
T  183 aattaggggctgtagtttgagaagagggtcctaactcaagggatttattagggctatttt-gttaactatcgtggaattagaaaatcattaatacgaa-t 86  T
Q  104 aggtgcagtgtacaaattatgggaatttagagaattcgaaagacgtagtctcatctctctc 164  Q
    ||||||||| ||| ||||| |||||  | ||  ||||||||||| |  |||||||||||||    
T  85 aggtgcagtataccaattaagggaacatcgatgattcgaaagacctgatctcatctctctc 25  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 248544 - 248690
Alignment:
Q  28 agggtcctaagtcaaggtattgattagggttattttagttaatcatcgtgaaactagagaaatattcataggaagtaggtgcagtgtacaaattatggga 127  Q
    ||||||||||||||||| |||||||| |  |||||| |||||   ||||| ||||||| ||  | ||||| ||| |||||||||| ||| ||||| ||||    
T  248544 agggtcctaagtcaagggattgattatgactatttt-gttaactgtcgtggaactagaaaatcactcataagaa-taggtgcagtataccaattagggga 248641  T
Q  128 atttagagaattcgaaagacgtagtctcatctctctctatcttttctaa 176  Q
    |  ||||  ||||||||||| |  ||||||||||||  || ||||||||    
T  248642 acatagatgattcgaaagacctgatctcatctctcttcatattttctaa 248690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University