View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11613_high_8 (Length: 328)

Name: NF11613_high_8
Description: NF11613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11613_high_8
NF11613_high_8
[»] chr4 (3 HSPs)
chr4 (19-112)||(37799026-37799119)
chr4 (198-286)||(37799205-37799293)
chr4 (198-255)||(50607078-50607135)


Alignment Details
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 37799026 - 37799119
Alignment:
Q  19 tataatcttctaaataagtaatgtgattaaccttctttccaaaggttttaaataatggtctcagtcacgctaaggttttcgtgatttcgacttt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  37799026 tataatcttctaaataagtaatgtgattaaccttctttccaaaggttttaaataatggtctcagtcacgctaagattttcgtgatttcaacttt 37799119  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 37799205 - 37799293
Alignment:
Q  198 ggtcactcactctaactctatgtctcgatcattattctctgtttttctttttcatcaccaagagagttgcaacacaatcaaaaccctaa 286  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37799205 ggtcattcactctaactctatgtctcgatcattattttctgtttttctttttcatcaccaagagagttgcaacacaatcaaaaccctaa 37799293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 50607135 - 50607078
Alignment:
Q  198 ggtcactcactctaactctatgtctcgatcattattctctgtttttctttttcatcac 255  Q
    |||||||||||||||||||||||||| |||||  |||||| |||| ||||||||||||    
T  50607135 ggtcactcactctaactctatgtctctatcatcgttctctattttcctttttcatcac 50607078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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