View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11613_low_15 (Length: 248)

Name: NF11613_low_15
Description: NF11613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11613_low_15
NF11613_low_15
[»] chr1 (2 HSPs)
chr1 (18-111)||(47211919-47212012)
chr1 (111-204)||(47212051-47212140)
[»] chr5 (1 HSPs)
chr5 (18-87)||(749098-749167)


Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 47211919 - 47212012
Alignment:
Q  18 ctaaagaggtgaaacatccattcagaaatctcctcaagcgcaataaccgacctcaacttgtcatttccattgccctaatggtttgtactaatct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47211919 ctaaagaggtgaaacatccattcagaaatctcctcaagcgcaataaccgacctcaacttgtcatttccattgctctaatggtttgtactaatct 47212012  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 47212051 - 47212140
Alignment:
Q  111 tcatggttgcaatcgcttaacaattcttgttttatatatagagaattgtagtcaaatacgtttaaaagttaaaaccgccctaattggaatagcg 204  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47212051 tcatggttgcaatcgcttaacaattcttgttttata----gagaattgtagtcaaatacgtttaaaagttaaaaccgccctaattggaatagcg 47212140  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 749167 - 749098
Alignment:
Q  18 ctaaagaggtgaaacatccattcagaaatctcctcaagcgcaataaccgacctcaacttgtcatttccat 87  Q
    |||||||||| || || || || || ||||| ||||| ||||| ||||||||||||||| ||||||||||    
T  749167 ctaaagaggtcaagcacccttttaggaatcttctcaaacgcaagaaccgacctcaacttatcatttccat 749098  T

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