View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11613_low_16 (Length: 244)
Name: NF11613_low_16
Description: NF11613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11613_low_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 507933 - 507709
Alignment:
| Q |
20 |
agagaaatatatattgggtgagacaaggatctatatgtataagtgatgaataatcttcatcttacaaactagtttagtaagtatgagttacaccggtata |
119 |
Q |
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| T |
507933 |
agagaaatatatattgggtgagacgaggatccatatgtataagtgatgaataatcttcatcttacaaactagtttagtaaatatgagttacaccagtata |
507834 |
T |
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| Q |
120 |
aattttaagttgaaaatctatattagaccatttgctattaggtcaaacattcagatattagatgattttacactgatcatgctcaccctctattattagg |
219 |
Q |
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| T |
507833 |
aattttaagttgaaaatctatattaaaccatttgctattaggtcaaacattcagatattagatgatgttacactaatcatgctcacccccgattattagg |
507734 |
T |
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| Q |
220 |
tcacactccataggccattcggact |
244 |
Q |
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| T |
507733 |
tcatactccataggccattcggact |
507709 |
T |
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