View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11613_low_19 (Length: 212)
Name: NF11613_low_19
Description: NF11613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11613_low_19 |
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| [»] scaffold0548 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: scaffold0548 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0548
Description:
Target: scaffold0548; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 10611 - 10400
Alignment:
| Q |
1 |
ctcaaaattatcagtgaacaaaatcattatacatctcaagacaaaacaaaatcgttatacactcaaaatctaagcatcataacacattcaactctcaaaa |
100 |
Q |
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| T |
10611 |
ctcaaaattatcagtgaacaaaatcattatacatctcaagacaaaacaaaatcgttatacactcaaaatctaagcatcataacacattcaactctcaaaa |
10512 |
T |
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| Q |
101 |
tctaagcaaaagggtcaccataaacacacaactcgagtgaagtaaattgaatgaacagtaaaaatccaaatccaaatcaaaatatagtgagagaagaaac |
200 |
Q |
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| T |
10511 |
tctaagcaaaagggtcaccataaacacacaaatcgagtgaagtaaattgagtgaacagtaaaaattcaaatccaaatcaaaatatagtgagagaagaaac |
10412 |
T |
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| Q |
201 |
gaaaagagtcaa |
212 |
Q |
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|||||||||||| |
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| T |
10411 |
gaaaagagtcaa |
10400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 15102393 - 15102604
Alignment:
| Q |
1 |
ctcaaaattatcagtgaacaaaatcattatacatctcaagacaaaacaaaatcgttatacactcaaaatctaagcatcataacacattcaactctcaaaa |
100 |
Q |
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| T |
15102393 |
ctcaaaattatcagtgaacaaaatcattatacatctcaagacaaaacaaaatcgttatacactcaaaatctaagcatcataacacattcaactctcaaaa |
15102492 |
T |
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| Q |
101 |
tctaagcaaaagggtcaccataaacacacaactcgagtgaagtaaattgaatgaacagtaaaaatccaaatccaaatcaaaatatagtgagagaagaaac |
200 |
Q |
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| T |
15102493 |
tctaagcaaaagggtcaccataaacacacaaatcgagtgaagtaaattgagtgaacagtaaaaattcaaatccaaatcaaaatatagtgagagaagaaac |
15102592 |
T |
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| Q |
201 |
gaaaagagtcaa |
212 |
Q |
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| T |
15102593 |
gaaaagagtcaa |
15102604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 2027257 - 2027194
Alignment:
| Q |
12 |
cagtgaacaaaatcattatacatctcaagacaaaacaaaatcgttatacactcaaaatctaagc |
75 |
Q |
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| T |
2027257 |
cagtgaacaaaatccttatacagctcaagacaaaacaaaatcattataagctcaaaatcaaagc |
2027194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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