View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11613_low_2 (Length: 469)
Name: NF11613_low_2
Description: NF11613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11613_low_2 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0184 (1 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Complemental strand, 20454233 - 20453782
Alignment:
| Q |
18 |
catcgaaatgcaagattattggcaatgtaaaggaacaattttcattcaaagctatacctaatcaaaagagtgtgtatgttccaaaccttttggatggcat |
117 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20454233 |
catcaaaatgcaagattattggcaatgtaaaggaacaattttcattcaaagctatacctaatcaaaagagtgtgtatgttccaaaccttttggatggcat |
20454134 |
T |
|
| Q |
118 |
ctcgttttggatcattagcttcttaagtagtatatttctttcaaaagctaatagcatcatgctactgttagttaaaattaatcttctgtgaaactagata |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20454133 |
ctcgttttggatcattagcttcttaagtagtatatttctttcaaaagctaatagcatcatgctactgttagttaaaattaatcttctgtgaaactagata |
20454034 |
T |
|
| Q |
218 |
ccacaaaacacgtattcaaatagagataagaaaagcattggtttcggagacttctgaaccatattcaaaattagatacctcaaattaatttatcaaaata |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20454033 |
ccacaaaacacgtattcaaatagagataagaaaagcattgatttcggagacttctgaaccatattcaaaattagatacctcaaattaatttatcaaaata |
20453934 |
T |
|
| Q |
318 |
aggatttttataatatttctacatctctcccgaattgtaaattcactcgaaagaaaatataacaaagtcaatttaactattcaatcaaacacgttttaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20453933 |
aggatttttataatatttctacatctctcccgaattgtaaattcactcgaaagaaaatataacaaagtcaatttaactatacaatcaaacacgttttaat |
20453834 |
T |
|
| Q |
418 |
cattcaaatataactatgaatctaaggtctatacactgtttttacatcaatc |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20453833 |
cattcaaatataactatgaatctaaggtctatacactgtttttacatcaatc |
20453782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 315
Target Start/End: Complemental strand, 14295199 - 14295009
Alignment:
| Q |
128 |
atcattagcttcttaagtagtatatttctttcaaaagctaatagcatcatgctactgttagttaaaattaatcttctgtgaaactagataccacaaaaca |
227 |
Q |
| |
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||||||||| | ||||| |||||||||||||| |||| || |||||||| |||| |||||||||||||||| || |||||||||||| | ||| | ||| |
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| T |
14295199 |
atcattagcctgttaagcagtatatttctttctaaaggtattagcatcagactac-gttagttaaaattaatgttttgtgaaactagaaatcacgacaca |
14295101 |
T |
|
| Q |
228 |
cgtattcaaatagagataagaaaagcattggtttcggag-acttctgaaccatattcaaa---attagatacctcaaattaatttatcaaaa |
315 |
Q |
| |
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|| ||| ||||||| ||||||||| ||||||| | |||| |||| | |||||||| |||||||| | ||||||||||||||||| |
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| T |
14295100 |
aataaccaattagagatcagaaaagcaccagtttcggtgaacttttgaatcgtattcaaaattattagatagccgaaattaatttatcaaaa |
14295009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 51131037 - 51131123
Alignment:
| Q |
128 |
atcattagcttcttaagtagtatatttctttcaaaagctaatagcatcatgctactgttagttaaaattaatcttctgtgaaactaga |
215 |
Q |
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||||||||| | ||||| |||||||||||||| |||| || |||||||| |||| |||||||||||||||| || |||||||||||| |
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| T |
51131037 |
atcattagcctgttaagcagtatatttctttctaaaggtattagcatcagactac-gttagttaaaattaatgttttgtgaaactaga |
51131123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 41861136 - 41860737
Alignment:
| Q |
18 |
catcgaaatgcaagattattggcaatgtaaaggaacaattttcattcaaagctatacctaatcaaaagagtgtgtatgttccaaaccttttggatggcat |
117 |
Q |
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|||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41861136 |
catcgaaatgcaagatcattggcaatttaaagaaacaattttcattcaaagctatacctaatcaaaagagtgtgtatgttccaaaccttttggatggcat |
41861037 |
T |
|
| Q |
118 |
ctcgttttggatcattagcttcttaagtagtatatttctttcaaaagctaatagcatcatgctactgttagttaaaattaatcttctgtgaaactagata |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41861036 |
ctcgttttggatcattagcttcttaagtagtatatttctttcaataggtaatagcatcatgctactgttagttaaaattaatcttctgtcaaactagata |
41860937 |
T |
|
| Q |
218 |
ccacaaaacacgtattcaaatagagataagaaaagcattggtttcggagacttctgaaccatattcaaaattagatacctcaaattaatttatcaaaata |
317 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41860936 |
ccacaaaacacatattcaaatagagataagaaaagcattggtttcggagacttctgaaccatagtcaaaattagatacctcaaattaatttatcaaaata |
41860837 |
T |
|
| Q |
318 |
aggatttttataatatttcta-----catctctcccgaattgtaaattcactcgaaagaaaatataacaaagtcaatttaactattcaatcaaacacgtt |
412 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
41860836 |
aggatttttataatatttctatgcagtatctctcccgaattgtaaattcactcgaaagaaaatataacaaagtcaatttaattatacaatcaaacacgtt |
41860737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 315
Target Start/End: Original strand, 36315025 - 36315215
Alignment:
| Q |
128 |
atcattagcttcttaagtagtatatttctttcaaaagctaatagcatcatgctactgttagttaaaattaatcttctgtgaaactagataccacaaaaca |
227 |
Q |
| |
|
||||||||| | ||||| |||||||||||||| |||| || |||||||| |||| |||||||||||||||| || |||||||||||| | ||| | ||| |
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| T |
36315025 |
atcattagcctgttaagcagtatatttctttctaaaggtattagcatcagactac-gttagttaaaattaatgttttgtgaaactagaaatcacgacaca |
36315123 |
T |
|
| Q |
228 |
cgtattcaaatagagataagaaaagcattggtttcggag-acttctgaaccatattcaaa---attagatacctcaaattaatttatcaaaa |
315 |
Q |
| |
|
|| ||| ||||||| ||||||||| ||||||| | |||| |||| | |||||||| |||||||| | ||||||||||||||||| |
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| T |
36315124 |
aataaccaattagagatcagaaaagcaccagtttcggtgaacttttgaatcgtattcaaaattattagatagccgaaattaatttatcaaaa |
36315215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 315
Target Start/End: Complemental strand, 718 - 528
Alignment:
| Q |
128 |
atcattagcttcttaagtagtatatttctttcaaaagctaatagcatcatgctactgttagttaaaattaatcttctgtgaaactagataccacaaaaca |
227 |
Q |
| |
|
||||||||| | ||||| |||||||||||||| |||| || |||||||| |||| |||||||||||||||| || |||||||||||| | ||| | ||| |
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|
| T |
718 |
atcattagcctgttaagcagtatatttctttctaaaggtattagcatcagactac-gttagttaaaattaatgttttgtgaaactagaaatcacgacaca |
620 |
T |
|
| Q |
228 |
cgtattcaaatagagataagaaaagcattggtttcggag-acttctgaaccatattcaaa---attagatacctcaaattaatttatcaaaa |
315 |
Q |
| |
|
|| ||| ||||||| ||||||||| ||||||| | |||| |||| | |||||||| |||||||| | ||||||||||||||||| |
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|
| T |
619 |
aataaccaattagagatcagaaaagcaccagtttcggtgaacttttgaatcgtattcaaaattattagatagccgaaattaatttatcaaaa |
528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 315
Target Start/End: Original strand, 30809 - 30999
Alignment:
| Q |
128 |
atcattagcttcttaagtagtatatttctttcaaaagctaatagcatcatgctactgttagttaaaattaatcttctgtgaaactagataccacaaaaca |
227 |
Q |
| |
|
||||||||| | ||||| | |||||||||||| | || || |||||||| |||| |||||||||||||||| || ||||||| |||| | ||||| ||| |
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|
| T |
30809 |
atcattagcctgttaagcaatatatttctttctacaggtattagcatcagactac-gttagttaaaattaatattttgtgaaattagaaatcacaacaca |
30907 |
T |
|
| Q |
228 |
cgtattcaaatagagataagaaaagcattggtttcggag-acttctgaaccatattcaaa---attagatacctcaaattaatttatcaaaa |
315 |
Q |
| |
|
|| ||| ||||||| ||||||||| |||||||| | |||| |||| | |||||||| |||||||| || ||||||||||||||||| |
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|
| T |
30908 |
aataaccaattagagatcagaaaagcaccggtttcggtgaacttttgaatcgtattcaaaattattagatagctgaaattaatttatcaaaa |
30999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 315
Target Start/End: Original strand, 16495874 - 16496064
Alignment:
| Q |
128 |
atcattagcttcttaagtagtatatttctttcaaaagctaatagcatcatgctactgttagttaaaattaatcttctgtgaaactagataccacaaaaca |
227 |
Q |
| |
|
||||||||| | ||||| |||||||||||||| |||| || |||||||| |||| |||||||||||||||| || |||||||||||| | ||| | ||| |
|
|
| T |
16495874 |
atcattagcctgttaagcagtatatttctttctaaaggtattagcatcagactac-gttagttaaaattaatgttttgtgaaactagaaatcacgacaca |
16495972 |
T |
|
| Q |
228 |
cgtattcaaatagagataagaaaagcattggtttcggag-acttctgaaccatattcaaa---attagatacctcaaattaatttatcaaaa |
315 |
Q |
| |
|
|| ||| ||||||| ||||||||| ||||||| | |||| |||| | |||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
16495973 |
aataaccaattagagatcagaaaagcaccagtttcggtgaacttttgaatcgtattcaaaattattagatagccgaaattaatttatcaaaa |
16496064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 315
Target Start/End: Original strand, 28195160 - 28195350
Alignment:
| Q |
128 |
atcattagcttcttaagtagtatatttctttcaaaagctaatagcatcatgctactgttagttaaaattaatcttctgtgaaactagataccacaaaaca |
227 |
Q |
| |
|
||||||||| | ||||| | |||||||||||| | || || |||||||| |||| |||||||||||||||| || |||||||||||| | ||||| ||| |
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|
| T |
28195160 |
atcattagcctgttaagcaatatatttctttctacaggtattagcatcagactac-gttagttaaaattaatgttttgtgaaactagaaatcacaacaca |
28195258 |
T |
|
| Q |
228 |
cgtattcaaatagagataagaaaagcattggtttcggag-acttctgaaccatattcaaa---attagatacctcaaattaatttatcaaaa |
315 |
Q |
| |
|
|| ||| ||||||| ||||||||| | |||||| | |||| |||| | |||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
28195259 |
aataaccaattagagatcagaaaagcaccgctttcggtgaacttttgaatcgtattcaaaattattagatagccgaaattaatttatcaaaa |
28195350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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