View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11613_low_4 (Length: 405)
Name: NF11613_low_4
Description: NF11613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11613_low_4 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr4 (7 HSPs) |
| |
|
| [»] scaffold0336 (1 HSPs) |
| | |
|
| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 6 - 405
Target Start/End: Complemental strand, 25590399 - 25590000
Alignment:
| Q |
6 |
agaagcagagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaa |
105 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
25590399 |
agaagcaaagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttaagaagatttcacaagcaacaagatccaaagaa |
25590300 |
T |
|
| Q |
106 |
acttgggatatactagagaattatcataacgcgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggagg |
205 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25590299 |
acttgggatatgctagagaattatcataacgtgggagaaaaagtgaatcaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggagg |
25590200 |
T |
|
| Q |
206 |
aagatcataaagtaagtgattgcttctccgagatgatttagattgtgactttaatgaaaaattgtggtgaaaacatcttagatcatatggtagttgataa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25590199 |
aagatcataaagtaagtgattgcttctccgagatgatttagattgtgactttaatgaaaaattgtggtgaaaacatcttagatcatatggtagttgataa |
25590100 |
T |
|
| Q |
306 |
agtcttgagatccttaagtccaaagtttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaattgcaaagttcc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25590099 |
agtcttgagatccttaagtccaaagtttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttcc |
25590000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 44540927 - 44540538
Alignment:
| Q |
14 |
agaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggga |
113 |
Q |
| |
|
|||||||||||||||| || |||| |||||||||||||||||| |||||||||||||||| ||||||||| | |||||||||||||||||| | ||||| |
|
|
| T |
44540927 |
agaagaaagattgtaaagctttgttctacattcaacaaaatgttgataatcaacattttgataagatttcaaaagcaacaagatccaaagaagcatggga |
44540828 |
T |
|
| Q |
114 |
tatactagagaattatcataacgcgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggaggaagatcat |
213 |
Q |
| |
|
||| || |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| |||||||| || ||||||||||| ||| |||| |
|
|
| T |
44540827 |
tattctggagaattatcataatgggggagaaaaggtgaaacaagtcaagttgcaatcatatagaaggaagtatgaaatgatgcaaatggaagaatatcag |
44540728 |
T |
|
| Q |
214 |
aaagtaagtgattgcttctccgagatgatttagattgtgactttaatgaaaaattgtggtgaaaacatcttagatcatatggtagttgataaagtcttga |
313 |
Q |
| |
|
|| || ||||||| |||||| |||||||| | ||| ||| ||| ||||| |||||||||||||| |||| ||||| ||| ||||||| |||||||||| |
|
|
| T |
44540727 |
aaggtgagtgattacttctcaaagatgattgaaattttgaatttgatgaagaattgtggtgaaaa-atctctgatcagatgatagttgagaaagtcttga |
44540629 |
T |
|
| Q |
314 |
gatccttaagtccaaagtttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaattgcaaagttc |
404 |
Q |
| |
|
|||| |||||| ||||||||| |||||||| ||||||||| | |||||||||||||| || |||||| || ||||||||||||| ||||| |
|
|
| T |
44540628 |
gatctctaagtcaaaagtttgacttcatagtggtagcaatccaagaagcaaaggatgtgaagactatgaaggttgaagaattgcagagttc |
44540538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 50780824 - 50780434
Alignment:
| Q |
14 |
agaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggga |
113 |
Q |
| |
|
|||||||||||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||||||||| | || || |
|
|
| T |
50780824 |
agaagaaagattgtaaagctatgttctacattcaacaaaatgttgataatcaacattttgagaagatttcaaaagcaaatagatccaaagaagcatgaga |
50780725 |
T |
|
| Q |
114 |
tatactagagaattatcataacgcgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggaggaagatcat |
213 |
Q |
| |
|
||| || |||||||||||||| | ||||||||||||||||||||||||| |||| |||||||||| |||||||| || ||||||||||| ||| |||| |
|
|
| T |
50780724 |
tattctggagaattatcataatgggggagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtatgaaatgatgcaaatggaagaatatcag |
50780625 |
T |
|
| Q |
214 |
aaagtaagtgattgcttctccgagatgatttagattgtgactttaatgaaaaattgtggtgaaaacatcttagatcatatggtagttgataaagtcttga |
313 |
Q |
| |
|
|| || ||||||| |||||| |||||||| | ||||||| ||| ||||| |||| |||||||||||||| ||| | ||| ||||||| |||||||||| |
|
|
| T |
50780624 |
aaggtgagtgattacttctcaaagatgattgaaattgtgaatttgatgaagaattatggtgaaaacatctctgattagatgatagttgagaaagtcttga |
50780525 |
T |
|
| Q |
314 |
gatccttaagtccaaagtttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaattgcaaagttc |
404 |
Q |
| |
|
|||| |||||| ||||||||| |||||||| ||||||||| | |||||||||||| | || |||||| |||||||||||||||| ||||| |
|
|
| T |
50780524 |
gatctctaagtcaaaagtttgacttcatagtggtagcaatccaagaagcaaaggatttgaagactatgaagattgaagaattgcagagttc |
50780434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 400
Target Start/End: Original strand, 36617847 - 36617885
Alignment:
| Q |
362 |
caaaggatgttaaaactatggagattgaagaattgcaaa |
400 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
36617847 |
caaaggatgtgaaaactatgaagattgaagaattgcaaa |
36617885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 405
Target Start/End: Original strand, 25170767 - 25171160
Alignment:
| Q |
14 |
agaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggga |
113 |
Q |
| |
|
||||||||||||| |||||| || ||||||||||||| |||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
25170767 |
agaagaaagattgcaaggcattgatttacattcaacataatgttgataatcaaaattttgagaagatttcaaaggcaacaagatccaaagaagcttggga |
25170866 |
T |
|
| Q |
114 |
tatactagagaattatcataacgcgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaag--tatgagattatgcaaatggaggaagatc |
211 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||| |||||||||||| ||||| | |||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
25170867 |
tatactggagaattatcataatgggggagaaaaaatgaaacaagtcatgttgctgtcatatagaagaaagtatatgagatgatgcaaatggaggaagatc |
25170966 |
T |
|
| Q |
212 |
ataaagtaagtgattgcttctccgagatgatttagattgtgactttaatgaaaaattgtggtgaaaacatcttagatcatatggtagttgataaagtctt |
311 |
Q |
| |
|
| ||||||||||||| |||||| |||||||| ||||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||| |||||||| |
|
|
| T |
25170967 |
aaaaagtaagtgattatttctccaagatgattgagattgtgaatttaatgaagaattttggtgaaaacatctcagatcatatagtagttgagaaagtctt |
25171066 |
T |
|
| Q |
312 |
gagatccttaagtccaaagtttgatttcatagtagtagca-atctaggaagcaaaggatgttaaaactatggagattgaagaattgcaaagttcc |
405 |
Q |
| |
|
||||| |||||||| ||| ||||||||||||||||||||| ||| | ||||||||||||| ||||||||| |||||||||||||||| |||||| |
|
|
| T |
25171067 |
gagattcttaagtcaaaaatttgatttcatagtagtagcagatc-aataagcaaaggatgtgaaaactatgaagattgaagaattgcagagttcc |
25171160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 5725410 - 5725020
Alignment:
| Q |
14 |
agaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggga |
113 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||||||| || |||||||||||||||||||||||||| | ||||| |||||||||||| | ||||| |
|
|
| T |
5725410 |
agaagaaagattgtaaagctctgttctacattcaacaaaatattgataatcaacattttgagaagatttcaaaagcaactagatccaaagaagcatggga |
5725311 |
T |
|
| Q |
114 |
tatactagagaattatcataacgcgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggaggaagatcat |
213 |
Q |
| |
|
||| || |||||||||||||| | ||||||||||||||||||||||||| |||| |||||||||| |||||| | || ||||||||||| |||||||| |
|
|
| T |
5725310 |
tattctggagaattatcataatgggggagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtataaaatgatgcaaatggaagaagatcag |
5725211 |
T |
|
| Q |
214 |
aaagtaagtgattgcttctccgagatgatttagattgtgactttaatgaaaaattgtggtgaaaacatcttagatcatatggtagttgataaagtcttga |
313 |
Q |
| |
|
|| || ||||||| |||||| |||||||| | ||||||| ||| ||||| ||||||||||||||||||| ||||| ||| ||||||| |||||||||| |
|
|
| T |
5725210 |
aaggtgagtgattacttctcaaagatgattgaaattgtgaatttgatgaagaattgtggtgaaaacatctctgatcagatgatagttgagaaagtcttga |
5725111 |
T |
|
| Q |
314 |
gatccttaagtccaaagtttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaattgcaaagttc |
404 |
Q |
| |
|
|||| ||||||| ||| ||||| |||||||| |||||||| | ||||||||||||| || |||| | || ||||||||||||| ||||| |
|
|
| T |
5725110 |
gatctttaagtcaaaattttgacttcatagtggtagcaatgcaacaagcaaaggatgtgaagactacgaaggttgaagaattgcagagttc |
5725020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 32 - 405
Target Start/End: Complemental strand, 6681249 - 6680875
Alignment:
| Q |
32 |
cactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttgggatatactagagaattatca |
131 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||||||||| ||| | ||||||||||| ||||||||||| |
|
|
| T |
6681249 |
cactgttttacattcaacaaaatgttgataatcaacattttgagaatatttcaaaagcaacaagatccaaggaagcatgggatatactggagaattatca |
6681150 |
T |
|
| Q |
132 |
taacgcgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggaggaagatcataaagtaagtgattgcttc |
231 |
Q |
| |
|
||| | | ||||||| |||||| |||||||| | ||| |||||||||| |||||| | || ||||| ||||| ||||| || || || ||||||| |||| |
|
|
| T |
6681149 |
taatgggagagaaaaagtgaaagaagtcaagctacagtcatatagaaggaagtataaaatgatgcagatggaagaagaccagaaggtgagtgattacttc |
6681050 |
T |
|
| Q |
232 |
tccgagatgatttagattgtgactttaatgaaaaattgtggtgaaaacatcttagatcatatggtagttgataaagtcttgagatccttaagtccaaagt |
331 |
Q |
| |
|
|| |||||||| ||||||||| || |||| ||||||||||||||||||| |||||| ||||||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
6681049 |
tcaaagatgattgagattgtgaacttgatgaggaattgtggtgaaaacatctcagatcagatggtagttgagaaagtcttgagatctttaagtcaaaagt |
6680950 |
T |
|
| Q |
332 |
ttgatttcatagtagtagc-aatctaggaagcaaaggatgttaaaactatggagattgaagaattgcaaagttcc |
405 |
Q |
| |
|
||||||| || |||||||| |||| | |||||||||||||| || |||||| ||||||||||||||||||||||| |
|
|
| T |
6680949 |
ttgattttattgtagtagcaaatccaagaagcaaaggatgtgaagactatgaagattgaagaattgcaaagttcc |
6680875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 404
Target Start/End: Original strand, 50912492 - 50912883
Alignment:
| Q |
14 |
agaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaa-cttggg |
112 |
Q |
| |
|
||||||||||||| || || || || |||||||||||||||||| ||||||| |||||||||||||| || |||| ||| |||||||||||| | |||| |
|
|
| T |
50912492 |
agaagaaagattgcaaagctcttttctacattcaacaaaatgttgataatcagcattttgagaagatatccaaggcgacaggatccaaagaaagcatggg |
50912591 |
T |
|
| Q |
113 |
atatactagagaattatcataacgcgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggaggaagatca |
212 |
Q |
| |
|
|||| || ||||||||||| || | ||||||||| ||||||||||| |||||||| |||| || || |||||||| || ||||| ||||| |||||||| |
|
|
| T |
50912592 |
atattctggagaattatcacaatgggggagaaaaagtgaaacaagtgaagttgcaatcatacaggaggaagtatgaaatgatgcagatggaagaagatca |
50912691 |
T |
|
| Q |
213 |
taaagtaagtgattgcttctccgagatgatttagattgtgactttaatgaaaaattgtggtgaaaacatcttagatcatatggtagttgataaagtcttg |
312 |
Q |
| |
|
||||| ||||||| || ||| |||| | | ||||||||| ||| ||||| |||| |||||||||||| | |||| ||||||||||| ||||||||| |
|
|
| T |
50912692 |
gaaagtgagtgattatttttccaagataactgagattgtgaatttgatgaagaattatggtgaaaacatttctcatcagatggtagttgagaaagtcttg |
50912791 |
T |
|
| Q |
313 |
agatccttaagtccaaagtttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaattgcaaagttc |
404 |
Q |
| |
|
||||| || |||| |||||||||||||||||||||||||||| | |||||||||||||| || |||||| ||||||||||| |||| ||||| |
|
|
| T |
50912792 |
agatctttgagtcaaaagtttgatttcatagtagtagcaatccaagaagcaaaggatgtgaagactatgaagattgaagaactgcagagttc |
50912883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 31355626 - 31355700
Alignment:
| Q |
330 |
gtttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaattgcaaagttc |
404 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| |||||||||| || || || |||||||||||||||| ||||| |
|
|
| T |
31355626 |
gtttgatttcattgtagtagcaattcaggaatcaaaggatgtgaagacattgaagattgaagaattgcagagttc |
31355700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 405
Target Start/End: Original strand, 20290450 - 20290524
Alignment:
| Q |
331 |
tttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaattgcaaagttcc |
405 |
Q |
| |
|
|||||||| ||||| || ||||| | ||| |||||||||| |||||| || |||||||||||||| |||||||| |
|
|
| T |
20290450 |
tttgattttatagtggttgcaattcatgaatcaaaggatgtgaaaactttgaagattgaagaattgaaaagttcc |
20290524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 404
Target Start/End: Original strand, 53977805 - 53977878
Alignment:
| Q |
331 |
tttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaattgcaaagttc |
404 |
Q |
| |
|
|||||||| ||||| || ||||| | ||| |||||||||| |||| | || |||||||||||||||||||||| |
|
|
| T |
53977805 |
tttgattttatagtggttgcaattcaagaatcaaaggatgtgaaaaatttgaagattgaagaattgcaaagttc |
53977878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 14 - 404
Target Start/End: Original strand, 29960904 - 29961294
Alignment:
| Q |
14 |
agaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggga |
113 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||||||||| | ||||| |
|
|
| T |
29960904 |
agaagaaagattgtaaagctctgttctacattcaacaaaatgttgataatcaacattttgagaagatttcaaaatcaactagatccaaagaagcatggga |
29961003 |
T |
|
| Q |
114 |
tatactagagaattatcataacgcgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggaggaagatcat |
213 |
Q |
| |
|
||| || |||||||||||||| | ||||||||||||||||||||||||| |||| |||||||||| |||||||| || ||||||||||| |||||||| |
|
|
| T |
29961004 |
tattctggagaattatcataatgggggagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtatgaaatgatgcaaatggaagaagatcag |
29961103 |
T |
|
| Q |
214 |
aaagtaagtgattgcttctccgagatgatttagattgtgactttaatgaaaaattgtggtgaaaacatcttagatcatatggtagttgataaagtcttga |
313 |
Q |
| |
|
|| || ||||||| |||||| |||||||| | ||||||| ||| |||| ||||||||||||||||||| ||||| ||| ||||||| |||||||||| |
|
|
| T |
29961104 |
aaggtgagtgattacttctcaaagatgattaaaattgtgaatttgctgaagaattgtggtgaaaacatctctgatcagatgatagttgagaaagtcttga |
29961203 |
T |
|
| Q |
314 |
gatccttaagtccaaagtttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaattgcaaagttc |
404 |
Q |
| |
|
|||| |||||| ||||||||| |||||||| ||||||||| | |||||||||||||| || |||||| || ||||||||||||| ||||| |
|
|
| T |
29961204 |
gatctctaagtcaaaagtttgacttcatagtggtagcaatccaagaagcaaaggatgtgaagactatgaaggttgaagaattgcagagttc |
29961294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 296308 - 296506
Alignment:
| Q |
14 |
agaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggga |
113 |
Q |
| |
|
|||||||||||||||| || | ||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||||| | ||||| |
|
|
| T |
296308 |
agaagaaagattgtaaagctcagttctacattcaacaaaatgttgataatcaacattttgagaagatttcaaaagcaactagatccaaagaagcatggga |
296407 |
T |
|
| Q |
114 |
tatactagagaattatcataacgcgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggaggaagatca |
212 |
Q |
| |
|
||| || |||||||||||||| | ||||||||||||||||||||||||| |||| |||||||||| |||||||| || ||||||||||| |||||||| |
|
|
| T |
296408 |
tattctggagaattatcataatgtgggagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtatgaaatgatgcaaatggaagaagatca |
296506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 286 - 404
Target Start/End: Original strand, 296527 - 296645
Alignment:
| Q |
286 |
gatcatatggtagttgataaagtcttgagatccttaagtccaaagtttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggaga |
385 |
Q |
| |
|
||||| ||| || |||| |||||||||||||| ||||| ||||||||| |||||||| ||||||||| | |||||||||||||| || |||||| || |
|
|
| T |
296527 |
gatcagatgataattgagaaagtcttgagatctctaagttaaaagtttgacttcatagtggtagcaatccaagaagcaaaggatgtgaagactatgaagg |
296626 |
T |
|
| Q |
386 |
ttgaagaattgcaaagttc |
404 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
296627 |
ttgaagaattgcagagttc |
296645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 18649180 - 18648790
Alignment:
| Q |
14 |
agaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggga |
113 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||||||| || |||||||||||||||||||||||||| | ||||| |||||||||||| | ||||| |
|
|
| T |
18649180 |
agaagaaagattgtaaagctctgttctacattcaacaaaatattgataatcaacattttgagaagatttcaaaagcaactagatccaaagaagcatggga |
18649081 |
T |
|
| Q |
114 |
tatactagagaattatcataacgcgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggaggaagatcat |
213 |
Q |
| |
|
||| || |||||||||||||| | ||||||||||||||||||||||||| |||| |||||||||| |||||| | || ||||||||||| |||||||| |
|
|
| T |
18649080 |
tattctggagaattatcataatgtgggagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtattaaatgatgcaaatggaagaagatcag |
18648981 |
T |
|
| Q |
214 |
aaagtaagtgattgcttctccgagatgatttagattgtgactttaatgaaaaattgtggtgaaaacatcttagatcatatggtagttgataaagtcttga |
313 |
Q |
| |
|
|| || ||||||| |||||| |||||||| | ||||||| ||| ||||| ||||||||||||||||||| ||||| ||| ||||||| |||||||||| |
|
|
| T |
18648980 |
aaggtgagtgattacttctcaaagatgattgaaattgtgaatttgatgaagaattgtggtgaaaacatctctgatcagatgatagttgagaaagtcttga |
18648881 |
T |
|
| Q |
314 |
gatccttaagtccaaagtttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaattgcaaagttc |
404 |
Q |
| |
|
|||| ||||||| ||| ||||| |||||||| |||||||| | ||||||||||||| || |||| | || ||||||||||||| ||||| |
|
|
| T |
18648880 |
gatctttaagtcaaaattttgacttcatagtggtagcaatgcaacaagcaaaggatgtgaagactacgaaggttgaagaattgcagagttc |
18648790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 11748385 - 11747995
Alignment:
| Q |
14 |
agaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggga |
113 |
Q |
| |
|
|||| ||||||||||| || ||||| || ||||||||||||||| |||||||| ||||||||||||||||| | ||||| |||| ||||||| | ||||| |
|
|
| T |
11748385 |
agaataaagattgtaaagctctgttctatattcaacaaaatgttgataatcaatattttgagaagatttcaaaagcaactagattcaaagaagcatggga |
11748286 |
T |
|
| Q |
114 |
tatactagagaattatcataacgcgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggaggaagatcat |
213 |
Q |
| |
|
||| | |||||||||||||| | ||||||||||||||||||||||||| |||| |||||||||| |||||||| | ||||||||||| |||||||| |
|
|
| T |
11748285 |
tattttggagaattatcataatgggggagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtatgaaaggatgcaaatggaagaagatcag |
11748186 |
T |
|
| Q |
214 |
aaagtaagtgattgcttctccgagatgatttagattgtgactttaatgaaaaattgtggtgaaaacatcttagatcatatggtagttgataaagtcttga |
313 |
Q |
| |
|
|| | ||||||| ||||| |||| ||| | ||||||| ||| ||||| ||||||||||||||||||| ||||| ||| ||||||| |||||||||| |
|
|
| T |
11748185 |
aagttgagtgattacttcttaaagattattgaaattgtgaatttgatgaagaattgtggtgaaaacatctatgatcagatgatagttgagaaagtcttga |
11748086 |
T |
|
| Q |
314 |
gatccttaagtccaaagtttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaattgcaaagttc |
404 |
Q |
| |
|
|||| ||||||| ||||||||||||| |||| ||||||||| | |||||||||||| | || |||||| || ||||||||||||| ||||| |
|
|
| T |
11748085 |
gatctttaagtcaaaagtttgatttcgtagtggtagcaatccaagaagcaaaggatttgaagactatgaaggttgaagaattgcagagttc |
11747995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 32371946 - 32371904
Alignment:
| Q |
14 |
agaagaaagattgtaaggcactgttttacattcaacaaaatgt |
56 |
Q |
| |
|
||||||||||||| |||||| |||| ||||||||||||||||| |
|
|
| T |
32371946 |
agaagaaagattgcaaggcattgttctacattcaacaaaatgt |
32371904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 37186357 - 37185967
Alignment:
| Q |
14 |
agaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggga |
113 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||||| | || || |
|
|
| T |
37186357 |
agaagaaagattgtaaagctctgttctacattcaacaaaatgttgataatcaacattttgagaagatttcaaaagcaactagatccaaagaagcatgaga |
37186258 |
T |
|
| Q |
114 |
tatactagagaattatcataacgcgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggaggaagatcat |
213 |
Q |
| |
|
||| || ||||||||||||| | |||||||||||| |||||||||||| |||| |||||||||| |||||||| || ||||||||||| |||||||| |
|
|
| T |
37186257 |
tattctgaagaattatcataatgggggagaaaaggttaaacaagtcaagctgcaatcatatagaaggaagtatgaaatgatgcaaatggaagaagatcag |
37186158 |
T |
|
| Q |
214 |
aaagtaagtgattgcttctccgagatgatttagattgtgactttaatgaaaaattgtggtgaaaacatcttagatcatatggtagttgataaagtcttga |
313 |
Q |
| |
|
|| || ||||||| ||| || |||||||| | ||||||| ||| ||||| |||| |||||||||||||| ||||| ||| ||||||| |||||||||| |
|
|
| T |
37186157 |
aaggtgagtgattacttttcaaagatgattcaaattgtgaatttgatgaagaattatggtgaaaacatctctgatcagatgatagttgagaaagtcttga |
37186058 |
T |
|
| Q |
314 |
gatccttaagtccaaagtttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaattgcaaagttc |
404 |
Q |
| |
|
|||| |||||| ||||||||| |||||||| |||| |||| | |||||||||||||| || |||||| || ||||||||||||| ||||| |
|
|
| T |
37186057 |
gatctctaagtcaaaagtttgacttcatagtggtagtaatccaagaagcaaaggatgtgaagactatgaaggttgaagaattgcagagttc |
37185967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 37790676 - 37790276
Alignment:
| Q |
14 |
agaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggga |
113 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||||||| || ||||||| |||||||||||||||| | ||||| ||||| |||||| | ||||| |
|
|
| T |
37790676 |
agaagaaagattgtaaagctctgttctacattcaacaaaatattgataatca---ttttgagaagatttcaaaagcaactagatctaaagaagcatggga |
37790580 |
T |
|
| Q |
114 |
tatactagagaattatcataacgcgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggaggaagatca- |
212 |
Q |
| |
|
||| || |||||||||||||| | ||||||||||||||||||||||||| |||| ||||||||| |||||||| || ||||| ||||| |||||||| |
|
|
| T |
37790579 |
tattctggagaattatcataatgggggagaaaaggtgaaacaagtcaagctgcaattatatagaaggaagtatgaaatgatgcatatggaagaagatcag |
37790480 |
T |
|
| Q |
213 |
------------taaagtaagtgattgcttctccgagatgatttagattgtgactttaatgaaaaattgtggtgaaaacatcttagatcatatggtagtt |
300 |
Q |
| |
|
|| || ||||||| |||||| |||||||| | ||||||| ||| ||||| |||||| ||||||||||| |||| ||| ||||| |
|
|
| T |
37790479 |
aaggtgagtgattacggtgagtgattacttctcaaagatgattgaaattgtgaatttgatgaagaattgttctgaaaacatctctaatcagatgatagtt |
37790380 |
T |
|
| Q |
301 |
gataaagtcttgagatccttaagtccaaagtttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaattgcaaa |
400 |
Q |
| |
|
|| |||||||||||||| |||||| ||||||||| |||||||| ||||||||| | |||||||||||||| || |||||| || ||||||||||||| | |
|
|
| T |
37790379 |
gagaaagtcttgagatctctaagtcaaaagtttgacttcatagtggtagcaatccaagaagcaaaggatgtgaagactatgcaggttgaagaattgcaga |
37790280 |
T |
|
| Q |
401 |
gttc |
404 |
Q |
| |
|
|||| |
|
|
| T |
37790279 |
gttc |
37790276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 25480389 - 25480490
Alignment:
| Q |
14 |
agaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggga |
113 |
Q |
| |
|
|||||||||| | ||| || |||||||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||| |||||| ||||||| |
|
|
| T |
25480389 |
agaagaaagactataaagctctgttttacattcaacaaaatgttgataatcaacattttgtgaagatatcaaaggcaacaagatctaaagaagcttggga |
25480488 |
T |
|
| Q |
114 |
ta |
115 |
Q |
| |
|
|| |
|
|
| T |
25480489 |
ta |
25480490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 6e-90; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 14 - 397
Target Start/End: Original strand, 43087685 - 43088068
Alignment:
| Q |
14 |
agaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggga |
113 |
Q |
| |
|
|||||||| | ||||| || ||||| || ||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||| |||||| | ||||| |
|
|
| T |
43087685 |
agaagaaaaactgtaaagctctgttctatattcaacaaaatgttgataatcaacattttgagaagatttcaaaagcaactagatctaaagaagcatggga |
43087784 |
T |
|
| Q |
114 |
tatactagagaattatcataacgcgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggaggaagatcat |
213 |
Q |
| |
|
||| | |||||||||||||| | ||||||||||||||||||||||||| |||| |||||||||| |||||||| || ||||||||||| |||||||| |
|
|
| T |
43087785 |
tattttggagaattatcataatgggggagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtatgaaatgatgcaaatggaagaagatcag |
43087884 |
T |
|
| Q |
214 |
aaagtaagtgattgcttctccgagatgatttagattgtgactttaatgaaaaattgtggtgaaaacatcttagatcatatggtagttgataaagtcttga |
313 |
Q |
| |
|
|| |||||||||| |||||| |||||||| | ||||||| ||| ||||| ||||||||||||||||| | ||||| ||| ||||||| |||||||||| |
|
|
| T |
43087885 |
aaggtaagtgattacttctcaaagatgattgaaattgtgaatttgatgaagaattgtggtgaaaacatttctgatcagatgatagttgagaaagtcttga |
43087984 |
T |
|
| Q |
314 |
gatccttaagtccaaagtttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaattgc |
397 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| |||| |||| | |||| ||||||||| || | |||| | |||||||||||| |
|
|
| T |
43087985 |
gatctttaagtcaaaagtttgatttcatagtggtagaaatccaagaagtaaaggatgtgaagattatgatggttgaagaattgc |
43088068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 14 - 303
Target Start/End: Original strand, 293741 - 294030
Alignment:
| Q |
14 |
agaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggga |
113 |
Q |
| |
|
|||||||||||| ||| || || ||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| ||| | || || |
|
|
| T |
293741 |
agaagaaagattataaagctctcttttacattcaacaaaatgttgataatcaacattttgagaagatttcaaaagcaacaagatccaaggaagcatgaga |
293840 |
T |
|
| Q |
114 |
tatactagagaattatcataacgcgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggaggaagatcat |
213 |
Q |
| |
|
||| ||||||||||||||||| | ||||||||| ||||||||||||||| ||||| |||||||||| |||||||| || ||||| ||||| |||||||| |
|
|
| T |
293841 |
tattctagagaattatcataatgggggagaaaaagtgaaacaagtcaagctgcagtcatatagaaggaagtatgaaatgatgcagatggaagaagatcag |
293940 |
T |
|
| Q |
214 |
aaagtaagtgattgcttctccgagatgatttagattgtgactttaatgaaaaattgtggtgaaaacatcttagatcatatggtagttgat |
303 |
Q |
| |
|
|| || ||||||| ||||||| |||||| | ||||||||| ||| ||||| ||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
293941 |
aaggtgagtgattacttctccaagatgactgagattgtgaatttgatgaagaattgtggtaaaaacatctctgatcagatggtagttgat |
294030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 14 - 398
Target Start/End: Original strand, 8266435 - 8266799
Alignment:
| Q |
14 |
agaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggga |
113 |
Q |
| |
|
||||||||||||| ||| || ||||| ||||||| ||||||||| ||||| |||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
8266435 |
agaagaaagattgcaagacattgtttaacattcagcaaaatgttgataattaacattttgagaagatttcaaaggcaacaagat----------ttga-- |
8266522 |
T |
|
| Q |
114 |
tatactagagaattatcataacgcgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggaggaagatcat |
213 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| ||||||||| || | ||||||||||||||| |||| |||||||||||||||||| | |
|
|
| T |
8266523 |
--------agaattatcataatgggggagaaaaggtgaaacatgtcaagttgtagtcttatagaagaaagtatcagatgatgcaaatggaggaagattag |
8266614 |
T |
|
| Q |
214 |
aaagtaagtgattgcttctccgagatgatttagattgtgactttaatgaaaaattgtggtgaaaacatcttagatcatatggtagttgataaagtcttga |
313 |
Q |
| |
|
||||||||||||| ||| || |||||||| ||||||||| ||||||||| |||| |||||||| ||||| | |||| ||||||||||| |||||||||| |
|
|
| T |
8266615 |
aaagtaagtgattatttcaccaagatgattgagattgtgaatttaatgaagaattatggtgaaaccatctcatatcagatggtagttgagaaagtcttga |
8266714 |
T |
|
| Q |
314 |
gatccttaagtccaaagtttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaattgca |
398 |
Q |
| |
|
||||||||||| || |||||||||||||||||| ||| | |||| ||||||||| ||||||||| ||||| |||||||||| |
|
|
| T |
8266715 |
gatccttaagttagaaatttgatttcatagtagtattaattcaagaagtaaaggatgtgaaaactatgaagattaaagaattgca |
8266799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 14 - 283
Target Start/End: Original strand, 35894828 - 35895097
Alignment:
| Q |
14 |
agaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggga |
113 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||||||||||||| | || || |||||||||||| | || || |
|
|
| T |
35894828 |
agaagaaagattgtaaagctctgttctacattcaacaaaatgttgataatcaacattttgagaagatttcaaaagccactagatccaaagaagcatgaga |
35894927 |
T |
|
| Q |
114 |
tatactagagaattatcataacgcgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggaggaagatcat |
213 |
Q |
| |
|
||| || |||||||||||||| | ||||||||||||||||||||| ||| |||| |||||||||| |||||||| || ||||||||||| |||||||| |
|
|
| T |
35894928 |
tattctggagaattatcataatgggggagaaaaggtgaaacaagttaagctgcaatcatatagaaggaagtatgaaatgatgcaaatggaagaagatcag |
35895027 |
T |
|
| Q |
214 |
aaagtaagtgattgcttctccgagatgatttagattgtgactttaatgaaaaattgtggtgaaaacatct |
283 |
Q |
| |
|
|| || ||||||| ||||| |||||||| | ||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
35895028 |
aaggtgagtgattacttcttaaagatgattgaaattgtgaatttgatgaagaattgtggtgaaaacatct |
35895097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 295 - 404
Target Start/End: Original strand, 295107 - 295216
Alignment:
| Q |
295 |
gtagttgataaagtcttgagatccttaagtccaaagtttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaat |
394 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| ||||||||||||||| || ||||||||| | |||||||||||||| || |||||| || ||||||||| |
|
|
| T |
295107 |
gtagttgagaaagtcttgagatctttaagtcaaaagtttgatttcattgtggtagcaatccaagaagcaaaggatgtgaagactatgaaggttgaagaat |
295206 |
T |
|
| Q |
395 |
tgcaaagttc |
404 |
Q |
| |
|
|||| ||||| |
|
|
| T |
295207 |
tgcagagttc |
295216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 404
Target Start/End: Original strand, 35895097 - 35895181
Alignment:
| Q |
320 |
taagtccaaagtttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaattgcaaagttc |
404 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||||||| | |||||||||||| | || |||||| || ||||||||||||| ||||| |
|
|
| T |
35895097 |
taagtcaaaagtttgacttcatagtggtagcaatccaagaagcaaaggatttgaagactatgaaggttgaagaattgcagagttc |
35895181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0336 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0336
Description:
Target: scaffold0336; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 404
Target Start/End: Original strand, 42 - 433
Alignment:
| Q |
14 |
agaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaa-cttggg |
112 |
Q |
| |
|
||||||||||||| || || || || |||||||||||||||||| ||||||| |||||||||||||| || |||| ||| |||||||||||| | |||| |
|
|
| T |
42 |
agaagaaagattgcaaagctcttttctacattcaacaaaatgttgataatcagcattttgagaagatatccaaggcgacaggatccaaagaaagcatggg |
141 |
T |
|
| Q |
113 |
atatactagagaattatcataacgcgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggaggaagatca |
212 |
Q |
| |
|
|||| || ||||||||||| || | ||||||||| ||||||||||| |||||||| |||| || || |||||||| || ||||| ||||| |||||||| |
|
|
| T |
142 |
atattctggagaattatcacaatgggggagaaaaagtgaaacaagtgaagttgcaatcatacaggaggaagtatgaaatgatgcagatggaagaagatca |
241 |
T |
|
| Q |
213 |
taaagtaagtgattgcttctccgagatgatttagattgtgactttaatgaaaaattgtggtgaaaacatcttagatcatatggtagttgataaagtcttg |
312 |
Q |
| |
|
||||| ||||||| || ||| |||| | | ||||||||| ||| ||||| |||| |||||||||||| | |||| ||||||||||| ||||||||| |
|
|
| T |
242 |
gaaagtgagtgattatttttccaagataactgagattgtgaatttgatgaagaattatggtgaaaacatttctcatcagatggtagttgagaaagtcttg |
341 |
T |
|
| Q |
313 |
agatccttaagtccaaagtttgatttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaattgcaaagttc |
404 |
Q |
| |
|
||||| || |||| |||||||||||||||||||||||||||| | |||||||||||||| || |||||| ||||||||||| |||| ||||| |
|
|
| T |
342 |
agatctttgagtcaaaagtttgatttcatagtagtagcaatccaagaagcaaaggatgtgaagactatgaagattgaagaactgcagagttc |
433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 37 - 405
Target Start/End: Complemental strand, 22664344 - 22663976
Alignment:
| Q |
37 |
ttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttgggatatactagagaattatcataacg |
136 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||| || ||| |||||| ||||||||||||| ||||||| || | || |||||||| || | |
|
|
| T |
22664344 |
ttttacattccacaaaatgttgataatcaacattttgagaatatatcaaaggcaataagatccaaagaagcttgggacattatggaaaattatcacaatg |
22664245 |
T |
|
| Q |
137 |
cgggagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggaggaagatcataaagtaagtgattgcttctccga |
236 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| |||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||| | |
|
|
| T |
22664244 |
ggggagaaaaagtgaaacaagtaaagttgcagtcatatagaagaagatatgagattatgcaaatggaagaagatcaaaaagtaagtgaccacttctcaaa |
22664145 |
T |
|
| Q |
237 |
gatgatttagattgtgactttaatgaaaaattgtggtgaaaacatcttagatcatatggtagttgataaagtcttgagatccttaagtccaaagtttgat |
336 |
Q |
| |
|
||||| | ||||||| | ||||| ||||||||||||||||||| ||||| || || ||||| ||||| ||||||| ||||||||||| |||||| |
|
|
| T |
22664144 |
actgattgaaattgtgaatcagatgaagaattgtggtgaaaacatctctgatcaaatagttgttgagaaagtgctgagatctttaagtccaaaatttgat |
22664045 |
T |
|
| Q |
337 |
ttcatagtagtagcaatctaggaagcaaaggatgttaaaactatggagattgaagaattgcaaagttcc |
405 |
Q |
| |
|
||||| ||||| ||||| | ||||| |||||||| ||||||||| | ||||| ||||||||||||||| |
|
|
| T |
22664044 |
ttcatggtagtggcaattcaagaagctaaggatgtgaaaactatgaaaattgaggaattgcaaagttcc |
22663976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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