View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11613_low_5 (Length: 379)
Name: NF11613_low_5
Description: NF11613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11613_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 372
Target Start/End: Original strand, 43163581 - 43163938
Alignment:
| Q |
15 |
catctttcacttccaacataatcacccctaaccaataaacaccattttccttagaaccaccacacctccccgacctgctttctaatattcatcatccatc |
114 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43163581 |
catctttcacttccaacataatcaaccctaaccaataaacaccattttccttagaaccaccacacctccccgacctgctttctaatattcatcatccatc |
43163680 |
T |
|
| Q |
115 |
tgaccaactatccctcttactagccccaaaaaattcaagtccacaatcagaaatcctagcacaacaaattagagaacttaacacaaccatatacaatatt |
214 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43163681 |
tgaccaactatccctcttactaaccccaaaaaattcaagtccacaatcagaaatcctagcacaacaaattagagaacttaacacaaccatatacaatatt |
43163780 |
T |
|
| Q |
215 |
tgatgagtctaaatgaagctaaggtgttagtaactaaacagatggaggaaacacccgcttttgcttaagaaactgtgaagaatcctttgaatgttcttta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43163781 |
tgatgagtctaaatgaagctaaggtgttagtaactaaacagatggaggaaacacccgcttttgcttaagaaactgtgaagaatcctttgaatgttcttta |
43163880 |
T |
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| Q |
315 |
tagtgaggagtgaagaagatatggaaaaagtcctatatatacctcacctttcatctca |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43163881 |
tagtgaggagtgaagaagatatggaaaaagtcctatatatacctcacctttcatctca |
43163938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 128 - 372
Target Start/End: Complemental strand, 30166881 - 30166635
Alignment:
| Q |
128 |
ctcttactagccccaaaaaattcaagtccacaatcagaaatcctagcacaacaaattagagaacttaacacaaccatatacaatatttgatgagtctaaa |
227 |
Q |
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| T |
30166881 |
ctcttactaaccccaaaaaata-aagttcacaatcagaaatcatagcacaaaaaattagagaactcaacacaaaaatgcacaatatttgatgagtctaaa |
30166783 |
T |
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| Q |
228 |
tgaagctaaggtgttagtaactaaacagatggaggaaacacccgcttttgcttaagaaactgt---gaagaatcctttgaatgttctttatagtgaggag |
324 |
Q |
| |
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||||||| | || |||||||||||||||||||||||| |||| |||||||| |||||||| | ||||||||||| ||||| || | | ||||||||| |
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| T |
30166782 |
tgaagctgatgtattagtaactaaacagatggaggaagcaccaacttttgctcaagaaactatgaagaagaatccttagaatgatcctaaaagtgaggag |
30166683 |
T |
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| Q |
325 |
tgaagaagatatggaaaaagtcctatatatacctcacctttcatctca |
372 |
Q |
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| ||||| | |||||||| |||||||||||||||||| ||||||||| |
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| T |
30166682 |
taaagaaaaaatggaaaaggtcctatatatacctcacacttcatctca |
30166635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 4224435 - 4224394
Alignment:
| Q |
26 |
tccaacataatcacccctaaccaataaacaccattttcctta |
67 |
Q |
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||||||| |||||||||||||| ||||||| ||||||||||| |
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| T |
4224435 |
tccaacaaaatcacccctaacccataaacatcattttcctta |
4224394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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