View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11613_low_6 (Length: 366)
Name: NF11613_low_6
Description: NF11613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11613_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 15 - 348
Target Start/End: Original strand, 36492594 - 36492927
Alignment:
| Q |
15 |
cacagatacatagattgatgcaaatttatacatgattttcactcctggaatatctttactatatagtgacaaaatagatgacagcaactgagattgatgt |
114 |
Q |
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| T |
36492594 |
cacagatacatagattgatgcaaatttatacatgattttcactcctggaatatctttactatatagtgacaagatagatgacagcaactgagattgatgt |
36492693 |
T |
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| Q |
115 |
ctatctatgcatgccttttttgatcaactcacaaacattatttattcatgaaatttattattaagaaagagtgcatcataacatgatcatagcattatga |
214 |
Q |
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| T |
36492694 |
ctatctatgcatgccattttttatcaactcacaaacattatttattcatgaaatttattattaagaaagagtgcatcataacatgatcatagcattatga |
36492793 |
T |
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| Q |
215 |
tcaattctgagttttgtcctcagcttgcacggcaacaaattcagcatgtgagcagcaatggccatggcaatagtaatggcaaccacctccaccatggtga |
314 |
Q |
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| T |
36492794 |
tcaattctgagttttgtcctcagcttgcacggcaacaaattcagcatgtgagcagcaatggccatggcaatagtaatggcaaccacctccaccatggtga |
36492893 |
T |
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| Q |
315 |
gaaccacctccaccgtgagaaccacctccatagt |
348 |
Q |
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| T |
36492894 |
gaaccacctccaccgtgagaaccacctccatagt |
36492927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 130 - 312
Target Start/End: Original strand, 36475745 - 36475924
Alignment:
| Q |
130 |
ttttttgatcaactcacaaacattatttattcatgaaatttattattaagaaagagtgcatcataacatgatcatagcattatgatcaattctgagtttt |
229 |
Q |
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| T |
36475745 |
ttttttgatcaacacacaa-cattatttattcatggaatttagtacta-gaaagagtgcatcatg-catgatcatagcattatgatcagttttgagtatt |
36475841 |
T |
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| Q |
230 |
gtcctcagcttgcacggcaacaaattcagcatgtgagcagcaatggccatggcaatagtaatggcaaccacctccaccatggt |
312 |
Q |
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| T |
36475842 |
gtccttagcttgcatggcaacaaattcagcatgcgagcagcacctgccatggcaatggtattggcaaccacctccaccgtggt |
36475924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 231 - 348
Target Start/End: Original strand, 36493014 - 36493134
Alignment:
| Q |
231 |
tcctcagcttgcacggcaacaaattcagcatgtgagcagcaatggccatggcaatagtaatggcaaccacctccaccatggtgagaaccacctccacc-- |
328 |
Q |
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| T |
36493014 |
tcctcagtttggacggcaacaaattcagcatatgagcagcaatggccatggcaatagtaatgacaaccacctccaccgtggtgagaaccacctccaccgt |
36493113 |
T |
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| Q |
329 |
-gtgagaaccacctccatagt |
348 |
Q |
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| T |
36493114 |
ggtgagaaccacctccatagt |
36493134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 36475639 - 36475714
Alignment:
| Q |
20 |
atacatagattgatgcaaatttatacatgattttcactcctggaatatctttact--atatagtgacaaaatagat |
93 |
Q |
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| T |
36475639 |
atacatagattgttgcaaatttatacatgatttccactaatgaaatatctatattacatatagtgacaagatagat |
36475714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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