View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11613_low_9 (Length: 314)
Name: NF11613_low_9
Description: NF11613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11613_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 3293441 - 3293730
Alignment:
| Q |
17 |
aagtgtaagagcaacatcactgtttagttaaaatgtcgttgtatgatattatgagaaaataacactacat--cataagtaaatcgtaaagatcaatgcta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
3293441 |
aagtgtaagagcaacatcactgtttagttaaaatgtcgttgtatgatattatgagaaaataacactacatatcatatgtaaatcgtaaagatcaatgcta |
3293540 |
T |
|
| Q |
115 |
tattacataaatatgttgtgtgctagaatgttcggactatcagaattttaaatcatgaaccatttaaattgacatgannnnnnnnngacaatcatttaaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3293541 |
tattacataaatatgttgtgtgctagaatgttcggactatcagaattttaaatcatgaaccatttaaattgacatgattttttttt-acaatcatttaaa |
3293639 |
T |
|
| Q |
215 |
ttgacatgatattaattggtgaagtgaatgtacacaaaatatattgtaaagtggatgaattacgctttctctgtttattagcgtcctttgc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3293640 |
ttgacatgatattaattggtgaagtgaatgtacacaaaatatattgtaaagtggatgaattacgctttctctgtttattagcgtcctttgc |
3293730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 301
Target Start/End: Original strand, 3305610 - 3305698
Alignment:
| Q |
218 |
acatgatattaattggtgaagtgaatgtacacaaaata-----tattgtaaagtggatgaattacgctttctctgtttattagcgtcct |
301 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||| | ||||||||||||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
3305610 |
acatgatgttaattggtgaagtgaatgtatacaaaaaaaaaaatattgtaaagtggatgaattaagctttctctgttcattagggtcct |
3305698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 3305271 - 3305340
Alignment:
| Q |
47 |
aaatgtcgttgtatgatattatgagaaaataacactacatcataagtaaatcgtaaagatcaatgctata |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| || ||| | ||||||||| ||||| |
|
|
| T |
3305271 |
aaatgtcattgtatgatattatgagaaaataacactacatcatatgtgaataatgaagatcaatactata |
3305340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 3305356 - 3305395
Alignment:
| Q |
151 |
ctatcagaattttaaatcatgaaccatttaaattgacatg |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3305356 |
ctatcagaattttaaatcatgaaccatttaaattcacatg |
3305395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University