View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11614_high_1 (Length: 870)
Name: NF11614_high_1
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 173 - 775
Target Start/End: Original strand, 47037019 - 47037627
Alignment:
| Q |
173 |
tcttgatggtccctactcataaaaaacaaatggaatggtaagctccaaaacactctttgagattgagcactactattctttcacctgtctcgctcattct |
272 |
Q |
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| T |
47037019 |
tcttgatggtccctactcataaaaaacaaatggtatggtaagctccaaaacactctttgagattgagcactactattctttcacctgtctcgctcattct |
47037118 |
T |
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| Q |
273 |
acatatcaacaactgcctcttttggtgcttatctcaatatccacttgtttttagcaaccgaatcaatgttaannnnnnnn-gtacgtttcaaactaatgc |
371 |
Q |
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| T |
47037119 |
acatatcaacaactgcctcttttggtgcttatctcaatatccacttgtttttagcaaccgaatcaatgttaaattttttttgtacgtttcaaactaatgc |
47037218 |
T |
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| Q |
372 |
cgctttgttgggccactgccgttcctatgaatcctatctttatctcttcgtcattcgttggcctcttttcacattggttaattgcatttgcacatatttt |
471 |
Q |
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| T |
47037219 |
cgctttgttgggccactgccgttcctatgaatcctatctttatctcttcgtcattcgttggcctcttttcacattggttaattgcatttgcacatatttt |
47037318 |
T |
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| Q |
472 |
gatcaatcatcatcaagataacatagttcacaaaaaacgcaagtgtcttcnnnnnnncatattgctatagagtgattagaatgattttgtttgtcaagca |
571 |
Q |
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| T |
47037319 |
gatctatcatcatcaagataatatagttcacaaaaaacgcaagtgtcttaaaaaaaacatattgatatagagtgattagaatgattttgtttgtcaagca |
47037418 |
T |
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| Q |
572 |
acaactacctcaacgcgaattggagcaatgaccgtcaatatgcgagttgtgagtatttgcacacacttttacgctcaagctaataaaag-----agagtg |
666 |
Q |
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| T |
47037419 |
acaaccgcctcaatgcgaattggagcaataaccgtcaatatgcgagttgtgagtatttgcagacacttttacgctcaagctagtaaaagagcaaagagtg |
47037518 |
T |
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| Q |
667 |
agaggttaaactttatattgttagtaccttttgatggctaacagtgcctttttataggcgttgatggtctattgagttggacctagtgtttggttctaag |
766 |
Q |
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| T |
47037519 |
agaggttaaactttatattgtaattaccttttgatggctaacagtgcctttttataggtgttgatggtctattgacttggacctagtgtttgggtctaag |
47037618 |
T |
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| Q |
767 |
agtagtgtt |
775 |
Q |
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| T |
47037619 |
agtagtgtt |
47037627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 47036851 - 47036954
Alignment:
| Q |
6 |
ggaggagcagagagcattcacatgacaaccgataaacataactgcatttatcataaatataataccgacatgactctgtaattgtgctcctgattctttt |
105 |
Q |
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| T |
47036851 |
ggaggagaagagagcattcacatgacaaccgataaacataactgcatttatcataaatataataccgacatgactctgtaattgtgctcctgattctttt |
47036950 |
T |
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| Q |
106 |
tcat |
109 |
Q |
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|||| |
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| T |
47036951 |
tcat |
47036954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 775 - 850
Target Start/End: Original strand, 47037650 - 47037725
Alignment:
| Q |
775 |
tctttatctgtatttggacttcgcgggattgaacctttgctcgacaggtgttgagtttgagcatttggcatgtcca |
850 |
Q |
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| T |
47037650 |
tctttatctgtatttggacttcgcgggattgaacctttgctcgacaggtgttgagtttgagcatttggcatgtcca |
47037725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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