View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11614_high_11 (Length: 550)
Name: NF11614_high_11
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_high_11 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 237 - 550
Target Start/End: Original strand, 49532697 - 49533010
Alignment:
| Q |
237 |
cgtacgtatacagcaaagtgtgttcttcagaggtgaaatgaggctcaggaaagccttctagaatgttctggagcttcttgattcccttctgcataatact |
336 |
Q |
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| T |
49532697 |
cgtacgtatacagcaaagtgtgttcttcagaggtgaaatgaggctcaggaaagccttctagaatgttctggagcttcttgattcccttctgcataatact |
49532796 |
T |
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| Q |
337 |
ccatccttgttcaaagttgataatgtttgacattttgacgaattgggaaaaataccaccaaaatctgctgcaatcgaaagaaattcacaagaaaatagaa |
436 |
Q |
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| T |
49532797 |
ccatccttgttcaaagttgataatgtttgacattttgacgaattgggaaaaataccaccaaaatctgctgcaatcgaaagaaattcacaagaaaatagaa |
49532896 |
T |
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| Q |
437 |
ttgagaatgcaaatgtggaaaaaagtggaagtgttcaaagatctaaatagaaaaggtgaacgaatcctggctaaaggaatcggagacagtgatgaaggag |
536 |
Q |
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| T |
49532897 |
ttgagaatgcaaatgtggaaaaaagtggaagtgttcaaagatctaaatagaaaaggtgaacgaatcctggctaacggaatcggagacagtgatgaaggag |
49532996 |
T |
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| Q |
537 |
aagaaaaacagcgc |
550 |
Q |
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| T |
49532997 |
aagaaaaacggcgc |
49533010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 49532483 - 49532635
Alignment:
| Q |
23 |
attcagtgttgtttgtactcaccgtcgaaacgatgtaatcttgaaatgtttccttatacttttcatacagtggctgagaatagtcatgaggcggcttttg |
122 |
Q |
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| T |
49532483 |
attcagtgttgtttgtactcactgtcgaaacgatgtaatcttgaaatgtttccttatacttttcatacagtggctgagaatagtcatgaggcggcttttg |
49532582 |
T |
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| Q |
123 |
agtacacatattgtaaacggtcctgcattgcaattttaaaatcaattaaaccc |
175 |
Q |
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| T |
49532583 |
agtacacatattgtaaacggtcctgcattgcaattttaaaatcaattaaaccc |
49532635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 49478561 - 49478659
Alignment:
| Q |
39 |
actcaccgtcgaaacgatgtaatcttgaaatgtttccttatacttttcatacagtggctgagaatagtcatgaggcggcttttgagtacacatattgta |
137 |
Q |
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| T |
49478561 |
actcaccgttgacacgatgtactcttcgaacgcttccttgtacttgtcatacaatggctgagaatagtcattaggaggcttttgagtacacatattgta |
49478659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 49703168 - 49703260
Alignment:
| Q |
66 |
aaatgtttccttatacttttcatacagtggctgagaatagtcatgaggcggcttttgagtacacatattgtaaacggtcctgcattgcaattt |
158 |
Q |
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| T |
49703168 |
aaatgtttccttgtacttttcatacaattgttcggaatattcatgaggaggcttttgagtacacataacgtaaatggtcctgcattacaattt |
49703260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 386
Target Start/End: Original strand, 49522388 - 49522505
Alignment:
| Q |
269 |
gtgaaatgaggctcaggaaagccttctagaatgttctggagcttcttgattcccttctgcataatactccatccttgttcaaagttgataatgtttgaca |
368 |
Q |
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| T |
49522388 |
gtgaactgagtctcatgaaagccttctagattattcttgagtttcttgataccttgctggataaaaccccatccttcttcaaagttgataatctttgaca |
49522487 |
T |
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| Q |
369 |
ttttgacgaattgggaaa |
386 |
Q |
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| T |
49522488 |
tgttggtgaattgagaaa |
49522505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 49486188 - 49486292
Alignment:
| Q |
54 |
gatgtaatcttgaaatgtttccttatacttttcatacagtggctgagaatagtcatgaggcggcttttgagtacacatattgtaaacggtcctgcattgc |
153 |
Q |
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| T |
49486188 |
gatgtactcttcaaatgtttccttgtacttttcatacaattgttcggaatattcatgaggaggcctttgagtgcacatagtgtagatggtcctgtattgc |
49486287 |
T |
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| Q |
154 |
aattt |
158 |
Q |
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| T |
49486288 |
aattt |
49486292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 49486668 - 49486708
Alignment:
| Q |
263 |
tcagaggtgaaatgaggctcaggaaagccttctagaatgtt |
303 |
Q |
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| T |
49486668 |
tcagaggtgaattgaggctccggcaagccttctagaatgtt |
49486708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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