View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11614_high_13 (Length: 536)
Name: NF11614_high_13
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 35 - 531
Target Start/End: Complemental strand, 7842630 - 7842121
Alignment:
| Q |
35 |
gctcatgtagttgcaatattctccaatacaagatctcacaatatactgttagaaaattgtcgatgaaaatgatgcaacacttgaacaaagaagatgataa |
134 |
Q |
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| T |
7842630 |
gctcatgtagttgcaatattctccaatacaagatctcacaatatactgttagaaaattgtctatgaaaatgatgcaacacttgaacaaagaagatgataa |
7842531 |
T |
|
| Q |
135 |
tgtcgattgcactaatgaattccaaggcatgtgtgtcagtgtgtcacaccaagttgtaggttcaattctccctaccaatctatgaatattggatgcaagt |
234 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7842530 |
tgtcgattgcaccaatgaattccaaggcatgtgtgtcagtgtgtcacaccaagttgtaggttcaattctccctaccaatctatgaatattggatgcaagt |
7842431 |
T |
|
| Q |
235 |
gggaagaaggctgaaccccctttaggatactttagaaaattttgaagtgtattcaacactcacttcaagcctattt-------ag-------aaaaagtt |
320 |
Q |
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|||||||||| |||| |||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
7842430 |
gggaagaaggatgaatcccctttaggatgcttaag-aaattttgaagtgtattcaacactcacttcaagcctatttttttgaaagtaaccgaaaaaagtt |
7842332 |
T |
|
| Q |
321 |
tctttcacttgctctcatgcattagagaagnnnnnnntcatttagagaatgattttgtatctaactcaagtaatgcaattgctttaatttgtttgtatgt |
420 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7842331 |
tctttcacttgctctcatgcattagagaagaaaaaaatcatttagagaatgattttgtatctaactcaagtaatgcaattgctttaatttgtttgtatgt |
7842232 |
T |
|
| Q |
421 |
ataggagcttctgagtatgctttgcagaaggctagagataccaaggaagcaatttcaggagccatgtcatacggaagggaaaaaacatcggagtcttata |
520 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7842231 |
ataggagcttctgagtatgcttcgcagaaggctagagataccaaggaagcaatttcaggagccatttcatacggaagggaaaaaacatcggagtcttata |
7842132 |
T |
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| Q |
521 |
atcgaattgga |
531 |
Q |
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| T |
7842131 |
atcgaattgga |
7842121 |
T |
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