View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11614_high_14 (Length: 531)
Name: NF11614_high_14
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_high_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 9 - 531
Target Start/End: Original strand, 1811062 - 1811591
Alignment:
| Q |
9 |
agcataggacgtgtaagggtgcagcaccgagggattcttctcaccgtcaaagggatagtaatcaggtcaggagcaattaagatgcacgaaggagagagga |
108 |
Q |
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| T |
1811062 |
agcataggacgtgtaagggtgcagcaccgagggattcttctcactgtcaaagggatagtaatcaggtcaggagcaattaagatgcacgaaggagagagga |
1811161 |
T |
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| Q |
109 |
agtacatgtgccagaaatgcaatggcaggtacatgcgttctcctcttcccctttttctcccactttataatttgcaaggaaaggatcatctattagtcac |
208 |
Q |
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| T |
1811162 |
agtacatgtgccagaaatgcaatggcaggtacatgcgttctcctcttcccctttttctcccactttataatttgcaaggaaaggatcatctattagtcac |
1811261 |
T |
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| Q |
209 |
tcttggtcattttatcttttgcaaatattagctgtactattaaatgcttaataattttgatattgtactacagtcatcagtaactattatatttaactct |
308 |
Q |
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| T |
1811262 |
tcttggtcattttatcttttgcaaatattagctgtactattaaatgcttaataattttgttattgtactacagtcatcagtaactattatatttaactct |
1811361 |
T |
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| Q |
309 |
atatatctaatgt-------gacaggcatgcatacatatacaatcctaattcatttttgtacacttacttattttcacaataactttgttctccgtcttt |
401 |
Q |
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| T |
1811362 |
atatatctaatgtgacagccgacaggcatgcatacatatacaatcctaattcatttttgtacacttactaattttcacaataactttgttctccgtcttt |
1811461 |
T |
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| Q |
402 |
ttcattaaatgttatcacaagcaagattttaaattgcagtcgtgactacgatttagttgcaacccttcatgttgtggacatatgtggttgatacgattgc |
501 |
Q |
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| T |
1811462 |
ttcattaaatgttatcacaagcaagattttaaattgcagtcgtgactacgatttagttgcaacccttcatgttgtggacatatgtggttgatacgattgc |
1811561 |
T |
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| Q |
502 |
aattgcagtcatacaattttcaaaaacact |
531 |
Q |
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| T |
1811562 |
aattgcagtcatacaattttcaaaaacact |
1811591 |
T |
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