View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11614_high_15 (Length: 502)
Name: NF11614_high_15
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 47126556 - 47126063
Alignment:
| Q |
1 |
ttgaagaacagaaatgggccagtgaaattgccatatacccttctgtttcccaatacctctgattattctagggagggtggactcactggtaagggaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47126556 |
ttgaagaacagaaatgggccagtgaaattgccttatacccttctgtttcccaatacctctgattattctagggagggtggactcactggtaagggaattc |
47126457 |
T |
|
| Q |
101 |
ccaacagcatatccatctgaaaccattctctttgaattcttgctatttatctaaccaaagacttagctttggtatcgaataaactatgtatcaccgacac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47126456 |
ccaacagcatatccatctgaaaccattctctttgaatttttgctatttatctaaccaaagacttagctttggtgtcgaataaactatgtatcaccgacac |
47126357 |
T |
|
| Q |
201 |
tttagattgaag----gtttggtgtccgacacgatccaaacatatgtgggtacattcaattatttca---tcttaaattattattggtgtcatcatgtaa |
293 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47126356 |
tttagattgaaggtgtgtttggtgttcgacacgatccaaacatatgtgggtacattcaattatttcattttcttaaattattattggtgtcatcatgtaa |
47126257 |
T |
|
| Q |
294 |
gtgtcgt-----gtgtctgtgtccgtgcttcatagtgaataaattatgtgtatgcctaccatattcttgtatttttatcttcttgttatgccaagactag |
388 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47126256 |
gtgtcgtgtcaagtgtctgtgtccgtgcttcatagtgaataaattatgtgtatgcctaccatattcttgtatttttatcttcttgttatgccaagactag |
47126157 |
T |
|
| Q |
389 |
agtgtacgaatgaaatatgtaatatcattagtcttcaaattatcatatgttggtgctcctttaattagtccaagctcattcgtaatactttccg |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47126156 |
agtgtacgaatgaaatatgtaatatcattagtcttcaaattatcatatgttggtgctcctttaattagtccaagctcattcgtaatactttccg |
47126063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University