View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11614_high_16 (Length: 492)
Name: NF11614_high_16
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 17 - 486
Target Start/End: Complemental strand, 46279208 - 46278739
Alignment:
| Q |
17 |
ctttttgtgtcagtcaggctcagaataaaatgcattatgcattgctgtgttatttctttgctttcctttttggaatgttatgtggtgaggtatcttcaga |
116 |
Q |
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| T |
46279208 |
ctttttgtgtcagtcaggctcagaataaaatgcattatgcattgctgtgttatttctttgctttcctttttggaatgttatgtggtgaggtatcttcaga |
46279109 |
T |
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| Q |
117 |
attttggaaacaatatttcataaatattgttgtgtgtgtatgtcatctctatttaaagtgttgccactttcttgtttgtttctgttctgagttctgacct |
216 |
Q |
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| T |
46279108 |
attttggaaacaatatttcataaatattgttgtgtgtgtatgtcatctctatttaaagtgttgccactttcttgtttgtttctgttctgagttctgacct |
46279009 |
T |
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| Q |
217 |
tgaaattggtacaagtttacaatttatatatgtgtctcttgtaaggggtatttttaattgatgataaagaaaaataactgattgatttttctccctatct |
316 |
Q |
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| T |
46279008 |
tgaaattggtacaagtttacaatttatatatgtgtctcttgtaaggggtatttttaattgatgataaagaaaaataactgattgatttttctccctatct |
46278909 |
T |
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| Q |
317 |
ggtgaatatatgcagtaattagttatatatcattacattttagttttgaaatggaattgaggtgtgttcaatttaatgctgctgctattgatgtcatatc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46278908 |
ggtgaatatatgcagtaattagttatatatcattacattttagttttgaaatggagttgaggtgtgttcaatttaatgctgctgctattgatgtcatatc |
46278809 |
T |
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| Q |
417 |
catttacataacagtgttcctgatcctacctgacatatttccacatgctgtagttgttttttcttctctc |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46278808 |
catttacataacagtgttcctgatcctacctgacatatttccacatgctgtagttgttttttcttctctc |
46278739 |
T |
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