View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11614_high_19 (Length: 440)

Name: NF11614_high_19
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11614_high_19
NF11614_high_19
[»] chr3 (12 HSPs)
chr3 (151-419)||(23511963-23512231)
chr3 (1-146)||(48191953-48192107)
chr3 (1-146)||(47537422-47537576)
chr3 (1-69)||(33121235-33121303)
chr3 (4-146)||(26846024-26846175)
chr3 (24-101)||(50544401-50544478)
chr3 (99-143)||(17620311-17620355)
chr3 (99-150)||(2364538-2364589)
chr3 (99-150)||(7313037-7313088)
chr3 (99-146)||(31547632-31547679)
chr3 (95-145)||(43121499-43121549)
chr3 (100-146)||(44888166-44888212)
[»] chr5 (7 HSPs)
chr5 (1-146)||(4415532-4415686)
chr5 (24-146)||(6049400-6049531)
chr5 (4-146)||(20208551-20208702)
chr5 (25-146)||(7000597-7000727)
chr5 (99-150)||(30732142-30732193)
chr5 (100-146)||(23878384-23878430)
chr5 (101-150)||(27116989-27117038)
[»] chr4 (11 HSPs)
chr4 (5-146)||(18106388-18106538)
chr4 (1-146)||(34322151-34322305)
chr4 (1-146)||(53486785-53486939)
chr4 (4-146)||(42778395-42778546)
chr4 (1-95)||(30273704-30273798)
chr4 (1-132)||(20395750-20395890)
chr4 (28-146)||(53780226-53780353)
chr4 (28-101)||(10563195-10563268)
chr4 (99-143)||(28713153-28713197)
chr4 (99-150)||(23642419-23642470)
chr4 (98-150)||(47419064-47419116)
[»] chr2 (3 HSPs)
chr2 (5-146)||(2999580-2999730)
chr2 (4-146)||(1380239-1380390)
chr2 (101-143)||(12807985-12808027)
[»] chr7 (9 HSPs)
chr7 (1-146)||(34231853-34232007)
chr7 (28-146)||(7458503-7458630)
chr7 (24-146)||(4077452-4077583)
chr7 (1-38)||(29113498-29113535)
chr7 (99-146)||(22819549-22819596)
chr7 (99-143)||(28173811-28173855)
chr7 (99-150)||(4937956-4938007)
chr7 (99-146)||(9084311-9084358)
chr7 (99-143)||(40682099-40682143)
[»] chr1 (8 HSPs)
chr1 (1-146)||(17708133-17708287)
chr1 (24-146)||(47106513-47106644)
chr1 (1-101)||(10711047-10711147)
chr1 (22-146)||(30110757-30110890)
chr1 (4-101)||(26720818-26720915)
chr1 (99-150)||(6050864-6050915)
chr1 (99-150)||(11908933-11908984)
chr1 (95-146)||(21335202-21335253)
[»] chr6 (6 HSPs)
chr6 (4-146)||(9199084-9199235)
chr6 (1-146)||(17079023-17079177)
chr6 (4-146)||(11060694-11060842)
chr6 (28-146)||(17873650-17873777)
chr6 (1-146)||(18051281-18051435)
chr6 (53-146)||(649898-650000)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-132)||(182283-182423)
[»] chr8 (8 HSPs)
chr8 (4-146)||(23680319-23680470)
chr8 (1-146)||(17658985-17659139)
chr8 (24-146)||(45255661-45255791)
chr8 (95-146)||(36157414-36157465)
chr8 (102-150)||(172367-172415)
chr8 (99-150)||(7924647-7924698)
chr8 (99-146)||(32266823-32266870)
chr8 (99-143)||(33694871-33694915)
[»] scaffold0179 (2 HSPs)
scaffold0179 (4-146)||(7685-7836)
scaffold0179 (4-146)||(12619-12770)
[»] scaffold0912 (1 HSPs)
scaffold0912 (63-146)||(2705-2796)
[»] scaffold0472 (1 HSPs)
scaffold0472 (99-146)||(3513-3560)
[»] scaffold0034 (1 HSPs)
scaffold0034 (99-150)||(105671-105722)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 151 - 419
Target Start/End: Original strand, 23511963 - 23512231
Alignment:
Q  151 gacactattttttattaagaaagagtaggggtgcctctagaaaaacaacaattcatggtagcagtcacataaatgcaacaccttcaattttttgtgttgg 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  23511963 gacactattttttattaagaaagagtaggggtgcctctagaaaaacaacaattcatgctagcagtcacataaatgcaataccttcaattttttgtgttgg 23512062  T
Q  251 aattcttttggtgatttcttaaccaatattttttcaaataaacatgattcatcctcaataaaaaataatgtattgaagagtgtgttgctaatattatttc 350  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23512063 aattcttttggtgatttcttaaccaatagtttttcaaataaacatgattcatcctcaataaaaaataatgtgttgaagagtgtgttgctaatattatttc 23512162  T
Q  351 caatgtacaagggcacaagtttaaaaatgttcttgtggtatttttgggatcattgtggaacttccctcg 419  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23512163 caatgtacaaaggcacaagtttaaaaatgttcttgtggtatttttgggatcattgtggaacttccctcg 23512231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 48191953 - 48192107
Alignment:
Q  1 ccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctac------ 94  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||          
T  48191953 ccacgaacagagtaacccaccaaagggtctggaaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataaggccctacactcct 48192052  T
Q  95 ---actcctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
       ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48192053 ctaactcctcctcctcccaggcccacaacctcctcctccacttccacgcctcccc 48192107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 47537422 - 47537576
Alignment:
Q  1 ccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctac------ 94  Q
    |||||||||| ||||||| | | |||||||||||||||||||||||||||  ||||||||| | ||| | |||||||||||||||| |||||||          
T  47537422 ccacgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctaaaacaaaatctagcagaaaaacatcagtcaataaagccctacactcct 47537521  T
Q  95 ---actcctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
       |||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  47537522 ctaactcctcctcctcccaagcccacaacctcctcctccacttccacgcctcccc 47537576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 33121303 - 33121235
Alignment:
Q  1 ccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaa 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33121303 ccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaa 33121235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 26846024 - 26846175
Alignment:
Q  4 cgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctac--------- 94  Q
    ||||||| ||||||| | | |||||| |||||||||||||||||||| |||||| ||  ||||| |||||||||||||||||| |||||||             
T  26846024 cgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaagccctacactcctcta 26846123  T
Q  95 actcctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
    |||||||||||||||| |||||||||||||| | |||| |||||||||||||    
T  26846124 actcctcctcctcccatgcccacaacctcctcccccacctccacgcctcccc 26846175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 50544401 - 50544478
Alignment:
Q  24 agggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacactcctc 101  Q
    ||||||||||| ||||||||| ||||| |||||||| | ||||| |||||||||||||||||| | | ||||||||||    
T  50544401 agggtctggcagccacacccatctgtctgaaacaaattcttgcagagaaacatcagtcaataaagtcatacactcctc 50544478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 17620311 - 17620355
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctc 143  Q
    ||||| |||||| |||||||||||||| |||||||||||||||||    
T  17620311 ctccttctcccacgcccacaacctcctcctccacttccacgcctc 17620355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 2364538 - 2364589
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctccccgccc 150  Q
    |||||||||||| |||||||||| ||||| |||| || ||||||||||||||    
T  2364538 ctcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgccc 2364589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 7313037 - 7313088
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctccccgccc 150  Q
    |||||||||||| |||||||||| ||||| |||| || ||||||||||||||    
T  7313037 ctcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgccc 7313088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 31547632 - 31547679
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
    |||||||||||| |||||||||| ||||| ||||| ||||||||||||    
T  31547632 ctcctcctcccatgcccacaaccgcctacgccactgccacgcctcccc 31547679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 43121549 - 43121499
Alignment:
Q  95 actcctcctcctcccaggcccacaacctcctactccacttccacgcctccc 145  Q
    |||||||||||||||| |||||||| | ||  |||||||||||||||||||    
T  43121549 actcctcctcctcccacgcccacaatccccgcctccacttccacgcctccc 43121499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 44888166 - 44888212
Alignment:
Q  100 tcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
    ||||||||||| |||||||||| ||||| ||||| ||||||||||||    
T  44888166 tcctcctcccatgcccacaaccgcctacgccactgccacgcctcccc 44888212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 4415686 - 4415532
Alignment:
Q  1 ccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacact--- 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||       
T  4415686 ccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataaggccctacactcct 4415587  T
Q  98 ------cctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
          |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4415586 ctaactcctcctcctcccaggcccacaacctcctcctccacttccacgcctcccc 4415532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 6049400 - 6049531
Alignment:
Q  24 agggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctac---------actcctcctcctcccaggcc 114  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||         ||||||||| |||||| |||    
T  6049400 agggtctggcaaccacacccacctgtcggaaaaaaaatcttgcaaagaaacatcagtcaataaagccctacactcctttaactcctccttctcccaagcc 6049499  T
Q  115 cacaacctcctactccacttccacgcctcccc 146  Q
     | |||||||| ||||||||||||||||||||    
T  6049500 tataacctcctcctccacttccacgcctcccc 6049531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 20208702 - 20208551
Alignment:
Q  4 cgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacact------ 97  Q
    ||||||| ||||||| | | ||||||||||||||||||||||||||| |||||| ||  ||||| |||||||||||||||||| ||||||||||          
T  20208702 cgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctgaaacataaacttgcagagaaacatcagtcaataaagccctacactcctcta 20208603  T
Q  98 ---cctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
       ||||||||||||| |||||||||||||| |||||| |||||||||||||    
T  20208602 actcctcctcctcccatgcccacaacctcctcctccacctccacgcctcccc 20208551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 7000727 - 7000597
Alignment:
Q  25 gggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacact---------cctcctcctcccaggccc 115  Q
    ||||||||||||||||||||| |||| |||||| ||| | ||| |||||||||| ||||||| ||||||||||         |||||| |||||| | ||    
T  7000727 gggtctggcaaccacacccacttgtctgaaacagaatctagcagagaaacatcaatcaataaagccctacactcctctaactcctccttctcccaagacc 7000628  T
Q  116 acaacctcctactccacttccacgcctcccc 146  Q
    ||||||||||  |||||||||||||||||||    
T  7000627 acaacctcctcttccacttccacgcctcccc 7000597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 30732193 - 30732142
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctccccgccc 150  Q
    |||||||||||| |||||||||| ||||| |||| || ||||||||||||||    
T  30732193 ctcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgccc 30732142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 23878430 - 23878384
Alignment:
Q  100 tcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
    ||||||||||| |||||||||||||||| |||||| || ||||||||    
T  23878430 tcctcctcccacgcccacaacctcctacgccactttcaagcctcccc 23878384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 27117038 - 27116989
Alignment:
Q  101 cctcctcccaggcccacaacctcctactccacttccacgcctccccgccc 150  Q
    ||||||||||||||||||||| ||||| |||| || ||||||| ||||||    
T  27117038 cctcctcccaggcccacaaccgcctacgccacctcaacgcctctccgccc 27116989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 7e-56; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 18106538 - 18106388
Alignment:
Q  5 gaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacact------- 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||           
T  18106538 gaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataaggccctacactcctctaa 18106439  T
Q  98 --cctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
      |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18106438 ctcctcctcctcccaggcccacaacctcctcctccacttccacgcctcccc 18106388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 34322305 - 34322151
Alignment:
Q  1 ccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacact--- 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||       
T  34322305 ccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataaggctctacactcct 34322206  T
Q  98 ------cctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
          |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34322205 ctaactcctcctcctcccaggcccacaacctcctcctccacttccacgcctcccc 34322151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 53486939 - 53486785
Alignment:
Q  1 ccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacact--- 97  Q
    |||||||||||||||||||| | |||||||||||||||||| |||||||| |||||||||| | |||||||||||||||||||||||||||||||||       
T  53486939 ccacgaacagagtaacccacaatagggtctggcaaccacactcacctgtctgaaacaaaatctcgcaaagaaacatcagtcaataaggccctacactcct 53486840  T
Q  98 ------cctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
          ||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  53486839 ctaactcctcctcctcccaagcccacaacctcctcctccacttccacgcctcccc 53486785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 42778395 - 42778546
Alignment:
Q  4 cgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctac--------- 94  Q
    ||||||||||||||||| | ||| ||||||||||| |||||||| || |||||| ||| ||||||||||||||||||||||||||||||||             
T  42778395 cgaacagagtaacccacaataggatctggcaaccaaacccacctatctgaaacagaatcttgcaaagaaacatcagtcaataaggccctacactcctcta 42778494  T
Q  95 actcctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  42778495 actcctcctcctcccaagcccacaacctcctcctccacttccacgcctcccc 42778546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 30273798 - 30273704
Alignment:
Q  1 ccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctaca 95  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| ||| |||| ||||||||||||||||    
T  30273798 ccacgaacagagtaacccacaaaagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaaaaaatatcaatcaataaggccctaca 30273704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 20395750 - 20395890
Alignment:
Q  1 ccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacactc-- 98  Q
    |||||||||| ||||||| | | |||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||      
T  20395750 ccacgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagccctacactcct 20395849  T
Q  99 -------ctcctcctcccaggcccacaacctcctactccac 132  Q
           |||||||||||| |||||||||||||| ||||||    
T  20395850 ctaactcctcctcctcccaagcccacaacctcctcctccac 20395890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 53780226 - 53780353
Alignment:
Q  28 tctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacac---------tcctcctcctcccaggcccaca 118  Q
    ||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| |||||| ||         |||||||||||||| |||||||    
T  53780226 tctggcaaccacacccacctgtctgaaacaaaatcttgcagagaaacatcagtcaataaagccctatactcctataattcctcctcctcccatgcccaca 53780325  T
Q  119 acctcctactccacttccacgcctcccc 146  Q
    ||||||| ||||||||||| ||||||||    
T  53780326 acctcctcctccacttccaagcctcccc 53780353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 10563268 - 10563195
Alignment:
Q  28 tctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacactcctc 101  Q
    |||||||||||||||||||||||  ||||||||| ||||| |||||||||||||||||| ||||||||||||||    
T  10563268 tctggcaaccacacccacctgtctaaaacaaaatcttgcagagaaacatcagtcaataaagccctacactcctc 10563195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 28713197 - 28713153
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctc 143  Q
    |||||||||||| ||||||| |||||| |||||||||||||||||    
T  28713197 ctcctcctcccacgcccacagcctcctcctccacttccacgcctc 28713153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 23642470 - 23642419
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctccccgccc 150  Q
    |||||||||||| |||||||||| ||||| |||| || ||||||||||||||    
T  23642470 ctcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgccc 23642419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 47419064 - 47419116
Alignment:
Q  98 cctcctcctcccaggcccacaacctcctactccacttccacgcctccccgccc 150  Q
    ||||||||||||| |||||||||| ||||| ||||  | ||||||||||||||    
T  47419064 cctcctcctcccaagcccacaaccgcctacgccaccgcaacgcctccccgccc 47419116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 7e-56; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 2999730 - 2999580
Alignment:
Q  5 gaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacact------- 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||           
T  2999730 gaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataaggccctacactcctctaa 2999631  T
Q  98 --cctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
      |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2999630 ctcctcctcctcccaggcccacaacctcctcctccacttccacgcctcccc 2999580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 1380239 - 1380390
Alignment:
Q  4 cgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctac--------- 94  Q
    ||||||||||||||||| | ||| ||||||||||| |||||||| || |||||| ||| |||||||||||||||||||||||||||| |||             
T  1380239 cgaacagagtaacccacaataggatctggcaaccaaacccacctatctgaaacataatcttgcaaagaaacatcagtcaataaggccttacactcctcta 1380338  T
Q  95 actcctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  1380339 actcctcctcctcccaagcccacaacctcctcctccacttccacgcctcccc 1380390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 12808027 - 12807985
Alignment:
Q  101 cctcctcccaggcccacaacctcctactccacttccacgcctc 143  Q
    |||||||||| |||||||||||||||| ||||||||| |||||    
T  12808027 cctcctcccacgcccacaacctcctacaccacttccaagcctc 12807985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 34231853 - 34232007
Alignment:
Q  1 ccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctac------ 94  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||          
T  34231853 ccacgaacagagtaacctaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcattcaataaggccctacactcct 34231952  T
Q  95 ---actcctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
       ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34231953 ctaactcctcctcctcccaggcccacaacctcctactccacttcaacgcctcccc 34232007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 7458630 - 7458503
Alignment:
Q  28 tctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacact---------cctcctcctcccaggcccaca 118  Q
    |||||||||||||||||||||||||||||| ||| ||||| |||||||| ||| ||||| ||||||||||         ||||||||||||| |||||||    
T  7458630 tctggcaaccacacccacctgtcggaaacagaatcttgcagagaaacattagttaataaagccctacactcctctaattcctcctcctcccatgcccaca 7458531  T
Q  119 acctcctactccacttccacgcctcccc 146  Q
    ||||||| ||||||||||| ||||||||    
T  7458530 acctcctcctccacttccaagcctcccc 7458503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 4077452 - 4077583
Alignment:
Q  24 agggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctac---------actcctcctcctcccaggcc 114  Q
    ||||||| ||||||||||||||||||| || ||||||| ||||||||| ||||||  |||||| |||||||         ||||||| |||||||| |||    
T  4077452 agggtctagcaaccacacccacctgtctgacacaaaatcttgcaaagacacatcaaacaataaagccctacactcctctaactcctcttcctcccaagcc 4077551  T
Q  115 cacaacctcctactccacttccacgcctcccc 146  Q
    ||||||||||| ||||||||||||||||||||    
T  4077552 cacaacctcctcctccacttccacgcctcccc 4077583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29113535 - 29113498
Alignment:
Q  1 ccacgaacagagtaacccaccaaagggtctggcaacca 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29113535 ccacgaacagagtaacccaccaaagggtctggcaacca 29113498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 22819596 - 22819549
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
    ||||||||||||||||||||||||||||| ||| | ||||||||||||    
T  22819596 ctcctcctcccaggcccacaacctcctacgccattgccacgcctcccc 22819549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 28173855 - 28173811
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctc 143  Q
    |||||||||||| |||||||| ||||| |||||||||||||||||    
T  28173855 ctcctcctcccacgcccacaatctcctcctccacttccacgcctc 28173811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 4938007 - 4937956
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctccccgccc 150  Q
    |||||||||||| |||||||||| ||||| |||| || ||||||||||||||    
T  4938007 ctcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgccc 4937956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 9084311 - 9084358
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
    ||||||||||||||||| ||| | ||| ||||||||||||||||||||    
T  9084311 ctcctcctcccaggccctcaatccccttctccacttccacgcctcccc 9084358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 40682143 - 40682099
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctc 143  Q
    |||||||||||| ||  |||||||||| |||||||||||||||||    
T  40682143 ctcctcctcccatgcaaacaacctcctcctccacttccacgcctc 40682099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 17708133 - 17708287
Alignment:
Q  1 ccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctac------ 94  Q
    |||||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||          
T  17708133 ccacgaacagagtaacccacaaaagggtttggcaaccacacccatctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaggccctacactcct 17708232  T
Q  95 ---actcctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
       |||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  17708233 ctaactcctcctcctcccaagcccacaacctcctcctccacttccacgcctcccc 17708287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 47106644 - 47106513
Alignment:
Q  24 agggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacact---------cctcctcctcccaggcc 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||         ||||||||||||| |||    
T  47106644 agggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataaagccctacactcctctaactcctcctcctcccaagcc 47106545  T
Q  115 cacaacctcctactccacttccacgcctcccc 146  Q
    || |||||||| ||||||||||| ||||||||    
T  47106544 cataacctcctcctccacttccatgcctcccc 47106513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 10711147 - 10711047
Alignment:
Q  1 ccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacactcct 100  Q
    |||||||||| ||||||| | | ||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||| ||||| | |||||||||||    
T  10711147 ccacgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctgaaacaaaatcttggaaagaaacatcagttaataaagtcctacactcct 10711048  T
Q  101 c 101  Q
    |    
T  10711047 c 10711047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 30110890 - 30110757
Alignment:
Q  22 aaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacactcctc---------ctcctcccagg 112  Q
    ||||||||||| |||||||||||||| || |||||||||| ||| | |||||||||||||||  | ||||||||||||||         ||||||||| |    
T  30110890 aaagggtctggtaaccacacccacctatctgaaacaaaatcttgtagagaaacatcagtcaaagaagccctacactcctctaactcctcctcctcccaag 30110791  T
Q  113 cccacaacctcctactccacttccacgcctcccc 146  Q
    ||||||||||||| ||||||||||||||||||||    
T  30110790 cccacaacctcctcctccacttccacgcctcccc 30110757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 26720818 - 26720915
Alignment:
Q  4 cgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacactcctc 101  Q
    ||||||| ||||||| | | |||||||| | |||||||||||||||| |||||||||  ||||| |||||||||||||||||| ||||||||||||||    
T  26720818 cgaacagtgtaaccctcaacagggtctgacgaccacacccacctgtctgaaacaaaaacttgcagagaaacatcagtcaataaagccctacactcctc 26720915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 6050864 - 6050915
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctccccgccc 150  Q
    |||||||||||| |||||||||| ||||| |||| || ||||||||||||||    
T  6050864 ctcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgccc 6050915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 11908984 - 11908933
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctccccgccc 150  Q
    |||||||||||| |||||||||| ||||| |||| || ||||||||||||||    
T  11908984 ctcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgccc 11908933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 21335253 - 21335202
Alignment:
Q  95 actcctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
    ||||||| |||||||| |||||||| ||||  ||||||||||||||||||||    
T  21335253 actcctcttcctcccaagcccacaatctccgcctccacttccacgcctcccc 21335202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 9199235 - 9199084
Alignment:
Q  4 cgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacactc----- 98  Q
    ||||||||||||||||| | | ||||||||||||| ||||||||||| |||||| ||| | |||||||||||||||||||||| |||||||||||         
T  9199235 cgaacagagtaacccacaatatggtctggcaaccaaacccacctgtctgaaacagaatctcgcaaagaaacatcagtcaataatgccctacactcctcta 9199136  T
Q  99 ----ctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
        |||||||||||| |||||||||||||| ||||||||||||||||||||    
T  9199135 acttctcctcctcccaagcccacaacctcctcctccacttccacgcctcccc 9199084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 17079177 - 17079023
Alignment:
Q  1 ccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctac------ 94  Q
    ||||||||||  |||||| | | | |||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||| |||||||          
T  17079177 ccacgaacagtataaccctcaacaaggtctggcaaccacacccacttgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagccctacgctcct 17079078  T
Q  95 ---actcctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
       |||||||||||||||| |||||||||||||| ||||||| ||||||||||||    
T  17079077 ctaactcctcctcctcccaagcccacaacctcctcctccactcccacgcctcccc 17079023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 11060842 - 11060694
Alignment:
Q  4 cgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacactc----- 98  Q
    ||||||| ||||||| | |||||||| |||||||||||||||||||| |||||| ||| | ||| ||||| ||||||||||||  ||||||||||         
T  11060842 cgaacagtgtaaccctcaaaagggtcaggcaaccacacccacctgtcagaaacataatctagcagagaaatatcagtcaataaatccctacactcctcta 11060743  T
Q  99 -ctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
     |||||||||||| |||||||||||||| ||||||||||||||||||||    
T  11060742 actcctcctcccaagcccacaacctcctcctccacttccacgcctcccc 11060694  T

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Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 17873777 - 17873650
Alignment:
Q  28 tctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacact---------cctcctcctcccaggcccaca 118  Q
    ||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| ||||||||||         ||||||||||||| |||||||    
T  17873777 tctggcaaccacacccacctgtctgaaacaaaatcttgcagagaaacatcagtcaataaagccctacactcctctaattcctcctcctcccatgcccaca 17873678  T
Q  119 acctcctactccacttccacgcctcccc 146  Q
    ||||||| ||||||||||| ||||||||    
T  17873677 acctcctcctccacttccaagcctcccc 17873650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 18051435 - 18051281
Alignment:
Q  1 ccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacact--- 97  Q
    |||||||||| ||||||| | | |||||| | |||||||||||||||||| |||| ||||| ||||||| |||||| ||||||||| ||||||||||       
T  18051435 ccacgaacagtgtaaccctcaacagggtcagacaaccacacccacctgtctgaaataaaatcttgcaaataaacattagtcaataaagccctacactcct 18051336  T
Q  98 ------cctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
          ||||||||||||| |||||||||||||| ||||||| ||||||||||||    
T  18051335 ctaactcctcctcctcccaagcccacaacctcctcctccactcccacgcctcccc 18051281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 650000 - 649898
Alignment:
Q  53 aaacaaaattttgcaaagaaacatcagtcaataaggccctacactcctc---------ctcctcccaggcccacaacctcctactccacttccacgcctc 143  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||         ||||||||| |||||||||||||| |||||||||||||||||    
T  650000 aaacaaaatcttgcaaagaaacatcagtcaataaagccctacactcctctaactcctcctcctcccaagcccacaacctcctcctccacttccacgcctc 649901  T
Q  144 ccc 146  Q
    |||    
T  649900 ccc 649898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 182283 - 182423
Alignment:
Q  1 ccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctacactc-- 98  Q
    |||||||||| ||||||| | | |||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||      
T  182283 ccacgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagccctacactcct 182382  T
Q  99 -------ctcctcctcccaggcccacaacctcctactccac 132  Q
           |||||||||||| |||||||||||||| ||||||    
T  182383 ctaactcctcctcctcccaagcccacaacctcctcctccac 182423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 23680319 - 23680470
Alignment:
Q  4 cgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctac--------- 94  Q
    ||||||| ||||||| | | ||||||||||||||||||||||||||| |||||| ||| | |||||||||||||||||||||| |||||||             
T  23680319 cgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctgaaacagaatctagcaaagaaacatcagtcaataaagccctacactcctcta 23680418  T
Q  95 actcctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
    ||||||||||||||||  ||||||||| ||| ||||||||||||||||||||    
T  23680419 actcctcctcctcccaaacccacaaccccctcctccacttccacgcctcccc 23680470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 17658985 - 17659139
Alignment:
Q  1 ccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctac------ 94  Q
    |||| ||||| ||||||| | | ||||||  ||||||||||||||||||| |||||||||| | ||| ||||||||||||||||||  ||||||          
T  17658985 ccacaaacagtgtaaccctcaatagggtcaagcaaccacacccacctgtcagaaacaaaatctagcagagaaacatcagtcaataaaaccctacactcct 17659084  T
Q  95 ---actcctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
       |||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  17659085 ctaactcctcctcctcccaagcccacaacctcctcctccacttccacgcctcccc 17659139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 45255791 - 45255661
Alignment:
Q  24 agggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggcccta--------cactcctcctcctcccaggccc 115  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| ||  |||||         |||||||||||||||| ||||    
T  45255791 agggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagccaacaaaaccctaactcctctaactcctcctcctcccaagccc 45255692  T
Q  116 acaacctcctactccacttccacgcctcccc 146  Q
    | |||||||| ||||||||||||||||||||    
T  45255691 ataacctcctcctccacttccacgcctcccc 45255661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 36157414 - 36157465
Alignment:
Q  95 actcctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
    ||||||| |||||||| |||||||| ||||| ||||||||||||||||||||    
T  36157414 actcctcttcctcccacgcccacaaactcctcctccacttccacgcctcccc 36157465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 172367 - 172415
Alignment:
Q  102 ctcctcccaggcccacaacctcctactccacttccacgcctccccgccc 150  Q
    |||||||||||||||||||| ||||| |||| || ||||||||||||||    
T  172367 ctcctcccaggcccacaaccgcctacgccacctcaacgcctccccgccc 172415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 7924647 - 7924698
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctccccgccc 150  Q
    |||||||||||| |||||||||| ||||| |||| || ||||||||||||||    
T  7924647 ctcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgccc 7924698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 32266823 - 32266870
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
    ||||||||||||||||||||||||||||| ||||  | ||||||||||    
T  32266823 ctcctcctcccaggcccacaacctcctacgccaccgcaacgcctcccc 32266870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 33694871 - 33694915
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctc 143  Q
    |||||||||||| ||| ||| |||||| |||||||||||||||||    
T  33694871 ctcctcctcccacgcctacagcctcctcctccacttccacgcctc 33694915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 7685 - 7836
Alignment:
Q  4 cgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctac--------- 94  Q
    ||||||| ||||||| | | |||||| |||||||||||||||||||| |||||| ||  ||||| |||||||||||||||||| |||||||             
T  7685 cgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaagccctacactcctcta 7784  T
Q  95 actcctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
    |||||||||||||||| |||||||||||||| |||||| |||||||||||||    
T  7785 actcctcctcctcccatgcccacaacctcctcctccacctccacgcctcccc 7836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 12619 - 12770
Alignment:
Q  4 cgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaattttgcaaagaaacatcagtcaataaggccctac--------- 94  Q
    ||||||| ||||||| | | |||||| |||||||||||||||||||| |||||| ||  ||||| |||||||||||||||||| |||||||             
T  12619 cgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaagccctacactcctcta 12718  T
Q  95 actcctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
    |||||||||||||||| |||||||||||||| | |||| |||||||||||||    
T  12719 actcctcctcctcccatgcccacaacctcctccaccacctccacgcctcccc 12770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 2796 - 2705
Alignment:
Q  63 ttgcaaagaaacatcagtcaataaggccctacactcctc------ctcctcc--caggcccacaacctcctactccacttccacgcctcccc 146  Q
    |||||||||||||||||||||||| |||||| |||||||      |||||||  || |||||||||||||| ||||||| ||||||||||||    
T  2796 ttgcaaagaaacatcagtcaataaagccctatactcctctaactcctcctcctccaagcccacaacctcctcctccactcccacgcctcccc 2705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 3513 - 3560
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctcccc 146  Q
    ||||||||||||||||||||||||||||| ||||  | ||||||||||    
T  3513 ctcctcctcccaggcccacaacctcctacgccaccgcaacgcctcccc 3560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 105722 - 105671
Alignment:
Q  99 ctcctcctcccaggcccacaacctcctactccacttccacgcctccccgccc 150  Q
    |||||||||||| |||||||||| ||||| |||| || ||||||||||||||    
T  105722 ctcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgccc 105671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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