View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11614_high_27 (Length: 315)
Name: NF11614_high_27
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 2305649 - 2305498
Alignment:
| Q |
16 |
cataggggaataatgaaataaaggagtgcaattgttgttgagtttattaggttgctaagaacaaaatccattatagttagacgaggttgtgttgtgattt |
115 |
Q |
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| T |
2305649 |
cataggggaataatgaaataaaggagtgcaattgttgttgagtttattaggttgctaagaacaaaatccattatagttagacgaggttgtgttgtgattt |
2305550 |
T |
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| Q |
116 |
gtaggagattagtggatatagatgtgccattagtattagcttaatatatata |
167 |
Q |
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| T |
2305549 |
gtaggagattagtggatatagatgtgccattagtattagcttaatatatata |
2305498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 165 - 295
Target Start/End: Complemental strand, 2305476 - 2305346
Alignment:
| Q |
165 |
atagatagatgtattcatggaatttggttgagtatgtaacttttattcattcaatgatatgccattcttttatccttattgattttaaaataatttaaaa |
264 |
Q |
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| T |
2305476 |
atagatagatgtattcatggaatttggttgagtatgtaacttttattcagtcaatgatatgccattcttttatttttattgattttaaaataatttaaaa |
2305377 |
T |
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| Q |
265 |
tcttaaatttgttttttctgtggataccgtt |
295 |
Q |
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| T |
2305376 |
tcctaaatttgtttttcctgtggataccgtt |
2305346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 2337970 - 2337821
Alignment:
| Q |
16 |
cataggggaataatgaaataaaggagtgcaattgttgttgagtttattaggttgctaagaacaaaatccattatagttagacgaggttgtgttgtgatt- |
114 |
Q |
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| T |
2337970 |
cataggggaataa---aataaaggagtgcaatagttgtgccgtttattaggctactaagaaccaaatccattatagttagatgaggttgtattgtgtttg |
2337874 |
T |
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| Q |
115 |
tgtaggagattagtggatatagatgtgccattagtattagcttaatatatata |
167 |
Q |
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| T |
2337873 |
tgtaggagattggtggatatagatgtgccatgagtattagcttaatatatata |
2337821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 2337741 - 2337687
Alignment:
| Q |
218 |
atgatatgccattcttttatccttattgattttaaaataatttaaaatcttaaat |
272 |
Q |
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| T |
2337741 |
atgatatgtcatacttttatttttattgatgttaaaataattttaaatcttaaat |
2337687 |
T |
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