View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11614_high_3 (Length: 750)

Name: NF11614_high_3
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11614_high_3
NF11614_high_3
[»] chr5 (18 HSPs)
chr5 (185-736)||(19806735-19807286)
chr5 (16-184)||(19805836-19806005)
chr5 (340-680)||(20111942-20112278)
chr5 (256-428)||(13712165-13712337)
chr5 (340-489)||(19653828-19653977)
chr5 (533-674)||(1347683-1347824)
chr5 (256-505)||(20049333-20049584)
chr5 (534-649)||(19969334-19969449)
chr5 (261-417)||(17377259-17377421)
chr5 (257-381)||(19969602-19969729)
chr5 (405-492)||(27358248-27358335)
chr5 (523-655)||(9619101-9619233)
chr5 (550-674)||(17392615-17392739)
chr5 (534-648)||(19653676-19653790)
chr5 (267-308)||(1348047-1348088)
chr5 (455-508)||(13712051-13712104)
chr5 (340-417)||(17383709-17383786)
chr5 (343-386)||(9618923-9618966)
[»] chr2 (1 HSPs)
chr2 (260-508)||(15784561-15784808)
[»] chr6 (1 HSPs)
chr6 (234-682)||(16258173-16258635)
[»] chr3 (7 HSPs)
chr3 (258-461)||(24912761-24912967)
chr3 (258-424)||(24890843-24891012)
chr3 (340-428)||(32226544-32226632)
chr3 (234-519)||(32241923-32242215)
chr3 (470-519)||(32224567-32224616)
chr3 (534-681)||(32241755-32241902)
chr3 (615-681)||(32224399-32224465)
[»] scaffold0009 (5 HSPs)
scaffold0009 (339-417)||(40586-40664)
scaffold0009 (339-417)||(33968-34046)
scaffold0009 (471-509)||(40729-40767)
scaffold0009 (472-509)||(34100-34137)
scaffold0009 (471-509)||(21852-21890)


Alignment Details
Target: chr5 (Bit Score: 524; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 185 - 736
Target Start/End: Original strand, 19806735 - 19807286
Alignment:
Q  185 gatacattaagtcaaatattttcatttcgactaatcttatgtgtgactttgcagatggagacaaatcttgccaatgaagaaatcaatttatattacaaag 284  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19806735 gatacattaagtcaaatattttcatttcgactaaccttatgtgtgactttgcagatggagacaaatcttgccaatgaagaaatcaatttatattacaaag 19806834  T
Q  285 gctttccagtgtttgaaaacttaaccgaccttcatctatcttggtgcattggcgctcatgactgggatgaggtagtgaaaatgctccaaaattgtcccaa 384  Q
    ||||| | ||||||||||||||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19806835 gcttttccgtgtttgaaaacttaactgaccttcaactatcttggtgcaatggcgctcatgattgggatgaggtagtgaaaatgctccaaaattgtcccaa 19806934  T
Q  385 actccaaactcttgcaattaaaaaggtttgtttgtcacatcaatcgatagttattgatttttactcgttcttctcttatgttcaagtatttttacaaatc 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19806935 actccaaactcttgcaattaaaaaggtttgtttgtcacatcaatcgatagttattgatttttactcgttcttctcttatgttcaagtatttttacaaatc 19807034  T
Q  485 atattttgtttctgattgacagtggataggttcattgaaaaccacaaaggattggaaacacccatatcatgttcctgaatgtgttacctctaatctaaca 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19807035 atattttgtttctgattgacagtggataggttcattgaaaaccacaaaggattggaaacacccatatcatgttcctgaatgtgttacctctaatctaaca 19807134  T
Q  585 acatgtgaaatcgaagactatcaagctatggaagctgactttcaatttgcaacatatattttgcaaaatgcaagggttttacaggttatggcaatccata 684  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19807135 acatgtgaaatcgaagactatcaagctatggaagctgactttcaatttgcaacatatattttgcaaaatgcaagggttttacaggttatggcaatccata 19807234  T
Q  685 gtccagatttccaaaatccaatggcgagcccccgacttttagaagatttgat 736  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19807235 gtccagatttccaaaatccaatggcgagcccccgacttttagaagatttgat 19807286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 19805836 - 19806005
Alignment:
Q  16 aaaacaacaaccaatgttacaacgggagggaactttaaatccttatccaagttgaacaatgctgatataagattattcgaccttccgttcagagcaattt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19805836 aaaacaacaaccaatgttacaacgggagggaactttaaatccttatccaagttgaacaatgctgatataagattattcgaccttccgttcagagcaattt 19805935  T
Q  116 ataatgtccgatttctaagtgtacacgaggtatgatac-tttatcgtcaatattatatgagctaaatttt 184  Q
    ||||||||||||||||| ||||||| |||||||||||| |||||| ||||||||||||||||| ||||||    
T  19805936 ataatgtccgatttctacgtgtacatgaggtatgatacttttatcatcaatattatatgagcttaatttt 19806005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 340 - 680
Target Start/End: Original strand, 20111942 - 20112278
Alignment:
Q  340 tcatgactgggatgaggtagtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgtttgtcacatcaatcgatagttatt 439  Q
    ||||||||||| ||||||||||||||||||||| || ||||||||||| ||| | |||  ||||  ||||||||||||||||||||||  |||||||| |    
T  20111942 tcatgactggggtgaggtagtgaaaatgctccagaaatgtcccaaacttcaagcacttaaaattgtaaaggtttgtttgtcacatcaaaggatagttact 20112041  T
Q  440 gatttttactcgttcttctcttatgttcaagtatttttacaaatcatattttgtttctgattgacagtggataggttcattgaaaaccacaaaggattgg 539  Q
    ||||||| || |||||| | || | |||||||||||||||||||| ||||||||||| ||||||||| || | | ||||   | ||| | | || |||||    
T  20112042 gattttttcttgttctt-ttttgtattcaagtatttttacaaatcctattttgtttccgattgacaggggtttgattca---acaactaaagagaattgg 20112137  T
Q  540 aaacacccatatcatgttcctgaatgtgttacctctaatctaacaacatgtgaaatcgaagactatcaagctatggaagctgactttcaatttgcaacat 639  Q
    ||| |||||||| |||||||||||||||||   |||  ||| ||||||||| | || | || |||| ||||| | |||  ||| ||||||||||||||||    
T  20112138 aaatacccatatgatgttcctgaatgtgttttgtctcgtctcacaacatgtaacattgtaggctatgaagctttcgaacatgattttcaatttgcaacat 20112237  T
Q  640 atattttgcaaaatgcaagggttttacaggttatggcaatc 680  Q
    |||||||||| ||||||||  || ||||||||||| |||||    
T  20112238 atattttgcagaatgcaagacttctacaggttatgacaatc 20112278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 256 - 428
Target Start/End: Complemental strand, 13712337 - 13712165
Alignment:
Q  256 caatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttcatctatcttggtgcattggcgct---catgactgggat 352  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||   | ||   ||   |||   ||||  ||| |     
T  13712337 caatgaagaaatcaattcatattacaaaggctttcctgtgtttgaaaacttaaccaaccttcatctaaagttgt---ttcaagctagacatgtgtggtac 13712241  T
Q  353 gaggtagtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgtttgtcacatcaat 428  Q
    ||||||||||||||||| ||||  ||||||||||| |||||||||  ||||  ||||||||||||||||| |||||    
T  13712240 gaggtagtgaaaatgctacaaagctgtcccaaacttcaaactcttcgaattgtaaaggtttgtttgtcacttcaat 13712165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 340 - 489
Target Start/End: Complemental strand, 19653977 - 19653828
Alignment:
Q  340 tcatgactgggatgaggtagtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgtttgtcacatcaatcgatagttatt 439  Q
    |||| ||||||| |||||  |||||||||| ||| ||||||||||||| ||| |||||  ||||||||||||||||||| |||| || | |||||| | |    
T  19653977 tcataactgggaagaggttatgaaaatgctacaatattgtcccaaacttcaagctcttaaaattaaaaaggtttgtttgacacaacagtggatagtgact 19653878  T
Q  440 gatttttactcgttcttctcttatgttcaagtatttttacaaatcatatt 489  Q
      |||||||| ||||||||||| | |||| || |||||||||||| ||||    
T  19653877 agtttttacttgttcttctcttttcttcatgtctttttacaaatcctatt 19653828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 533 - 674
Target Start/End: Complemental strand, 1347824 - 1347683
Alignment:
Q  533 ggattggaaacacccatatcatgttcctgaatgtgttacctctaatctaacaacatgtgaaatcgaagactatcaagctatggaagctgactttcaattt 632  Q
    |||||||| | ||||||||||||||||| |||||||| ||||| |||| ||||||||| | |||  | ||||||||||| |||||||||| || | ||||    
T  1347824 ggattggatatacccatatcatgttcctcaatgtgtttcctctcatcttacaacatgtaatatcatacactatcaagctgtggaagctgatttccgattt 1347725  T
Q  633 gcaacatatattttgcaaaatgcaagggttttacaggttatg 674  Q
    ||||| ||||| ||| | |||||||   | ||||||||||||    
T  1347724 gcaacctatatattgaagaatgcaaaactgttacaggttatg 1347683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 256 - 505
Target Start/End: Original strand, 20049333 - 20049584
Alignment:
Q  256 caatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttcatctatcttggtg-catt--ggcgctcatgactgggat 352  Q
    ||||||||||||||||| |||||| |||||  |||| ||||||  ||||||||| || ||||| |||  |||||  |||   |||  ||||||||| | |    
T  20049333 caatgaagaaatcaattcatattataaaggacttcccgtgttttgaaacttaactgaacttcaactacattggtatcataaaggcattcatgactgaggt 20049432  T
Q  353 gaggtagtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgtttgtcacatcaatcgatagttattgatttttactcgt 452  Q
    ||||| |||||||||||||| || ||||  |||||  || |||||  ||||  ||||||||||||||||||||||  |||||| ||||| ||||||| |     
T  20049433 gaggtggtgaaaatgctccagaaatgtcgaaaacttgaagctcttcaaattgtaaaggtttgtttgtcacatcaaaggatagtgattgacttttacttg- 20049531  T
Q  453 tcttctcttatgttcaagtatttttacaaatcatattttgtttctgattgaca 505  Q
    || ||  || | || ||||||||||||||||| | ||||||||| ||||||||    
T  20049532 tcctcatttcttttgaagtatttttacaaatcctcttttgtttcggattgaca 20049584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 534 - 649
Target Start/End: Complemental strand, 19969449 - 19969334
Alignment:
Q  534 gattggaaacacccatatcatgttcctgaatgtgttacctctaatctaacaacatgtgaaatcgaagactatcaagctatggaagctgactttcaatttg 633  Q
    ||||||||| |||||||||||||||| |||||||||   ||| |||| ||||||||| | ||   | ||||||||||| |||||||||| |||| |||||    
T  19969449 gattggaaatacccatatcatgttcccgaatgtgttttgtctcatcttacaacatgtaatattacacactatcaagctgtggaagctgattttcgatttg 19969350  T
Q  634 caacatatattttgca 649  Q
    |||| |||||||||||    
T  19969349 caacgtatattttgca 19969334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 261 - 417
Target Start/End: Original strand, 17377259 - 17377421
Alignment:
Q  261 aagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttcatctatcttggt------gcattggcgctcatgactgggatga 354  Q
    |||||||||||| || | ||||| || ||||  ||||||||||| |||||   ||||| ||||||||||      ||||| ||| |||||||||||| |     
T  17377259 aagaaatcaattcatttgacaaaagccttcccatgtttgaaaacataaccagacttcaactatcttggtctccaagcattagcgttcatgactgggaggt 17377358  T
Q  355 ggtagtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgttt 417  Q
    |||| |||||||||| || |||||||||||||| ||||||||| | |||  ||||||||||||    
T  17377359 ggtattgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgttt 17377421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 257 - 381
Target Start/End: Complemental strand, 19969729 - 19969602
Alignment:
Q  257 aatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttcatctatcttggtgcatt---ggcgctcatgactgggatg 353  Q
    |||| ||||||||||| ||||||||||| |||||||||||||| |||||||||| | || |  |||| |||| | | |   |||  |||||| ||||| |    
T  19969729 aatgcagaaatcaattcatattacaaagactttccagtgtttggaaacttaaccaaactgctactatgttgggggaatgaaggcattcatgagtgggacg 19969630  T
Q  354 aggtagtgaaaatgctccaaaattgtcc 381  Q
    ||||||||||||| ||||||||||||||    
T  19969629 aggtagtgaaaatactccaaaattgtcc 19969602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 405 - 492
Target Start/End: Complemental strand, 27358335 - 27358248
Alignment:
Q  405 aaaaggtttgtttgtcacatcaatcgatagttattgatttttactcgttcttctcttatgttcaagtatttttacaaatcatattttg 492  Q
    |||||||||||||||||| ||||| ||||||||||| |||||  | ||| ||||||| |  ||||||||||||||||| | |||||||    
T  27358335 aaaaggtttgtttgtcacctcaattgatagttattggtttttgtttgttattctcttctaatcaagtatttttacaaaccctattttg 27358248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 655
Target Start/End: Original strand, 9619101 - 9619233
Alignment:
Q  523 aaaccacaaaggattggaaacacccatatcatgttcctgaatgtgttacctctaatctaacaacatgtgaaatcgaagactatcaagctatggaagctga 622  Q
    |||||| | ||||||||||| ||||| |||||||||||||||||||| | ||| || ||||||||||| | ||   | |||||| || | ||||| ||||    
T  9619101 aaaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaacattttacactatctagatgtggaacctga 9619200  T
Q  623 ctttcaatttgcaacatatattttgcaaaatgc 655  Q
     |||| ||||||||  |||||||| || |||||    
T  9619201 ttttcgatttgcaaggtatatttttcagaatgc 9619233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 674
Target Start/End: Original strand, 17392615 - 17392739
Alignment:
Q  550 atcatgttcctgaatgtgttacctctaatctaacaacatgtgaaatcgaagactatcaagctatggaagctgactttcaatttgcaacatatattttgca 649  Q
    |||||||||| ||||||||| | ||| ||||||||| || |||| |   ||||||| |||||   |||||||| |||| ||| |||||||||||||||||    
T  17392615 atcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagttatagactatgaagcttgcgaagctgattttcgattcgcaacatatattttgca 17392714  T
Q  650 aaatgcaagggttttacaggttatg 674  Q
     ||||| ||  ||||||| ||||||    
T  17392715 gaatgcgagacttttacaagttatg 17392739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 534 - 648
Target Start/End: Complemental strand, 19653790 - 19653676
Alignment:
Q  534 gattggaaacacccatatcatgttcctgaatgtgttacctctaatctaacaacatgtgaaatcgaagactatcaagctatggaagctgactttcaatttg 633  Q
    ||||||||| |||||| |||||||||||||||||| || |||   ||||||||||||  ||| ||| ||||| |||||   |||||||| ||||  |||     
T  19653790 gattggaaatacccatgtcatgttcctgaatgtgtcacgtctcgcctaacaacatgtagaattgaaaactatgaagcttctgaagctgattttctttttt 19653691  T
Q  634 caacatatattttgc 648  Q
    ||||||| |||||||    
T  19653690 caacatacattttgc 19653676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Complemental strand, 1348088 - 1348047
Alignment:
Q  267 tcaatttatattacaaaggctttccagtgtttgaaaacttaa 308  Q
    |||||| |||||||||||||||||| ||||||||||||||||    
T  1348088 tcaattcatattacaaaggctttcccgtgtttgaaaacttaa 1348047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 455 - 508
Target Start/End: Complemental strand, 13712104 - 13712051
Alignment:
Q  455 ttctcttatgttcaagtatttttacaaatcatattttgtttctgattgacagtg 508  Q
    |||| ||||||||||||||||| | ||||||| |||||| ||||||||||||||    
T  13712104 ttctattatgttcaagtattttgaaaaatcatgttttgtctctgattgacagtg 13712051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 340 - 417
Target Start/End: Original strand, 17383709 - 17383786
Alignment:
Q  340 tcatgactgggatgaggtagtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgttt 417  Q
    |||| ||||||| | ||||||||||||||| || |||||||||| ||| ||||||||| | |||  ||||||||||||    
T  17383709 tcataactgggaggtggtagtgaaaatgctacagaattgtcccatacttcaaactcttaccattctaaaggtttgttt 17383786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 9618923 - 9618966
Alignment:
Q  343 tgactgggatgaggtagtgaaaatgctccaaaattgtcccaaac 386  Q
    |||||||||||| ||| ||||||||||||||| |||||||||||    
T  9618923 tgactgggatgatgtaatgaaaatgctccaaagttgtcccaaac 9618966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 260 - 508
Target Start/End: Original strand, 15784561 - 15784808
Alignment:
Q  260 gaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttcatctatcttgg-tgcattggcgctcatgactgggatgaggta 358  Q
    ||||||||||||| |||| |||| || ||||| ||||||| |||||||| ||| ||||| |||| |||| | ||| |||  ||||||||  | |||||||    
T  15784561 gaagaaatcaattcatataacaacggatttcctgtgtttggaaacttaatcgaacttcaactatgttggattcat-ggcattcatgactatgttgaggta 15784659  T
Q  359 gtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgtttgtcacatcaatcgatagttattgatttttactcgttcttct 458  Q
    ||||||||||| || |||||||| ||||| ||| |||||  |||| ||||||| |||||||| |||||| ||||||||| |  |||||||  |||||| |    
T  15784660 gtgaaaatgctacagaattgtccaaaacttcaagctcttagaattgaaaaggtctgtttgtcgcatcaa-cgatagttactagtttttacatgttcttat 15784758  T
Q  459 cttatgttcaagtatttttacaaatcatattttgtttctgattgacagtg 508  Q
    ||| | |||||| || | | |||||| ||||||||||||||||| |||||    
T  15784759 cttcttttcaagaatatatgcaaatcctattttgtttctgattggcagtg 15784808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 234 - 682
Target Start/End: Complemental strand, 16258635 - 16258173
Alignment:
Q  234 tgcagatggagacaaatcttgccaatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttcatctatcttggtgc-- 331  Q
    ||||||||| || || |||  ||||| |||||||||||| ||||||| ||||||  || ||||||||||||||||  || ||||  |||| |||||        
T  16258635 tgcagatggggaaaagtctccccaatcaagaaatcaattcatattaccaaggctgccctgtgtttgaaaacttaattgaacttcgactattttggtttga 16258536  T
Q  332 -attggcgctcatgactgggatgaggtagtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgtttgtcacatcaatcg 430  Q
     | | ||  |||||| ||| ||||||||||| |||||||||| |||||||| ||||| |||| |||| |||||  ||||||||||| ||||| || ||      
T  16258535 taattgcattcatgattggtatgaggtagtgcaaatgctccataattgtccgaaacttcaaagtctttcaatttcaaaggtttgttggtcacgtcgatga 16258436  T
Q  431 atagttattgatttttactcgttcttctcttatgttc-----aagtatttttacaaatcatattttgtttctgattgacagtggataggttcattgaaaa 525  Q
    ||||||  || |||||  | ||||||| ||| |  ||     |||||||||||| |||  |||||||| | |||||||||||||| ||||| ||  |  |    
T  16258435 atagttcatggtttttgttggttcttcccttctagtctctttaagtatttttacgaattctattttgtctttgattgacagtggacaggtttatcaacta 16258336  T
Q  526 ccac---aa---aggattggaaacacccatatcatgttcctgaatgtgttacctctaatctaacaacatgtgaaatcgaagactatcaagctatggaagc 619  Q
    |||    ||   | ||||||||| ||||||||   |||||||| |||||| | ||  || ||||||||||  ||||   ||||||||| || || |||||    
T  16258335 ccaacgaaattgaagattggaaatacccatatacggttcctgagtgtgtttcatcccatttaacaacatgcaaaattttagactatcatgccatagaagc 16258236  T
Q  620 tgactttcaatttgcaacatatattttgcaaaatgcaagggttttacaggttatggcaatcca 682  Q
    ||| |||| ||||| |||||||||||||| |||||||||   |||||||||||||| ||||||    
T  16258235 tgattttcgatttgtaacatatattttgcgaaatgcaagacatttacaggttatggaaatcca 16258173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 258 - 461
Target Start/End: Original strand, 24912761 - 24912967
Alignment:
Q  258 atgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttcatctatctt-ggtgcatt--ggcgctcatgactgggatga 354  Q
    ||||||||||||||| |||||| ||||| |||||  |||||||||||| |||||| ||||| || | || ||| ||    |||  |||||| || |||||    
T  24912761 atgaagaaatcaattcatattataaaggttttcctatgtttgaaaactgaaccgatcttcaactgtgttaggttcaagaaggcattcatgattgagatga 24912860  T
Q  355 ggtagtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgtttgtcacatcaatcgatagttattgatttttactcgttc 454  Q
    |||||||||||||||  |  ||||||||||||| ||||||||   |||| ||||||||||||||||||||  ||  ||||||| | | ||||||  ||||    
T  24912861 ggtagtgaaaatgctttaggattgtcccaaacttcaaactctaaaaattcaaaaggtttgtttgtcacatgcatgtatagttactaaattttacatgttc 24912960  T
Q  455 ttctctt 461  Q
    |||||||    
T  24912961 ttctctt 24912967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 258 - 424
Target Start/End: Original strand, 24890843 - 24891012
Alignment:
Q  258 atgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttcatctatctt-ggtgca--ttggcgctcatgactgggatga 354  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| ||||| || | || ||| ||     ||  |||||| ||||| ||    
T  24890843 atgaagaaatcaattcatattacaaaggttttcctgtgtttgaaaacttaaccgaacttcaactgtgttcggttcaagaatgcattcatgattgggacga 24890942  T
Q  355 ggtagtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgtttgtcacat 424  Q
    || ||||||||||||  |  ||||||||||||| |||| |||   |||| ||||||||||||||||||||    
T  24890943 ggcagtgaaaatgctttaggattgtcccaaacttcaaattctaaaaattcaaaaggtttgtttgtcacat 24891012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 340 - 428
Target Start/End: Original strand, 32226544 - 32226632
Alignment:
Q  340 tcatgactgggatgaggtagtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgtttgtcacatcaat 428  Q
    |||||| ||| ||||||||||| ||||||||||  ||||||||||||| ||||||||| |||||  ||||||||||| ||||| |||||    
T  32226544 tcatgattggtatgaggtagtgcaaatgctccattattgtcccaaacttcaaactcttccaatttcaaaggtttgttggtcacgtcaat 32226632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 234 - 519
Target Start/End: Complemental strand, 32242215 - 32241923
Alignment:
Q  234 tgcagatggagacaaatcttgccaatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttcatctatcttggtgc-a 332  Q
    ||||||||| || || |||  ||||| |||||||||||| ||||||| |||||| ||  ||||||||||||||||| || ||||  |||| |||||   |    
T  32242215 tgcagatggggaaaagtctccccaatcaagaaatcaattcatattaccaaggctatcatgtgtttgaaaacttaactgaacttcgactattttggtttga 32242116  T
Q  333 ttggcgc--tcatgactgggatgaggtagtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgtttgtcacatcaatcg 430  Q
    ||   ||  |||| | ||| |||||||| || ||||||||||  |||||||||| || ||||||||| |||||  ||||||||||| | ||| || ||      
T  32242115 ttattgcattcataattggtatgaggtactgcaaatgctccattattgtcccaaccttcaaactctttcaattttaaaggtttgttggccacgtcgatga 32242016  T
Q  431 atagttattgatttttactcgttcttctcttatgttc----aagtatttttacaaatcatattttgtttctgattgacagtggataggttcat 519  Q
    |||||||||| ||| |  | |||||||| || | ||     ||||||||||||||||| |||||||| ||||||| |||||||| || |||||    
T  32242015 atagttattggtttatgttggttcttcttttctattttttaaagtatttttacaaatcctattttgtctctgattaacagtggacagattcat 32241923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 519
Target Start/End: Complemental strand, 32224616 - 32224567
Alignment:
Q  470 gtatttttacaaatcatattttgtttctgattgacagtggataggttcat 519  Q
    |||||||||| |||| |||||||  |||||||||||||||||||||||||    
T  32224616 gtatttttacgaatcctattttgcctctgattgacagtggataggttcat 32224567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 681
Target Start/End: Complemental strand, 32241902 - 32241755
Alignment:
Q  534 gattggaaacacccatatcatgttcctgaatgtgttacctctaatctaacaacatgtgaaatcgaagactatcaagctatggaagctgactttcaatttg 633  Q
    ||||||||||||||||||   |||||||| |||||| | ||  || ||||||||||  ||||   || |||||| ||  | |||  ||| |||| |||||    
T  32241902 gattggaaacacccatatacggttcctgattgtgtttcatcccatttaacaacatgcaaaattttaggctatcatgccttagaaaatgattttcgatttg 32241803  T
Q  634 caacatatattttgcaaaatgcaagggttttacaggttatggcaatcc 681  Q
     ||||||||||||||| ||||||||  ||||| ||||||||| |||||    
T  32241802 taacatatattttgcagaatgcaagatttttaaaggttatggaaatcc 32241755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 681
Target Start/End: Complemental strand, 32224465 - 32224399
Alignment:
Q  615 gaagctgactttcaatttgcaacatatattttgcaaaatgcaagggttttacaggttatggcaatcc 681  Q
    |||||||| |||| ||||| ||||||||||||||| ||||||||  ||| | ||||||||| |||||    
T  32224465 gaagctgattttcgatttgtaacatatattttgcagaatgcaagactttgaaaggttatggaaatcc 32224399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 40586 - 40664
Alignment:
Q  339 ctcatgactgggatgaggtagtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgttt 417  Q
    |||||||||||  ||||||| ||||||||||||| |||||||| ||||| ||||||||| | |||||||||||||||||    
T  40586 ctcatgactggagtgaggtaatgaaaatgctccagaattgtccgaaacttcaaactctttcgattaaaaaggtttgttt 40664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 33968 - 34046
Alignment:
Q  339 ctcatgactgggatgaggtagtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgttt 417  Q
    |||||||||||  ||||||| || ||||||||||  ||||||| ||||| ||||||||| | |||||||||||||||||    
T  33968 ctcatgactggagtgaggtaatgcaaatgctccagcattgtccgaaacttcaaactctttcgattaaaaaggtttgttt 34046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 471 - 509
Target Start/End: Original strand, 40729 - 40767
Alignment:
Q  471 tatttttacaaatcatattttgtttctgattgacagtgg 509  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  40729 tatttttacaaatcatattttgtctctgattgacagtgg 40767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 509
Target Start/End: Original strand, 34100 - 34137
Alignment:
Q  472 atttttacaaatcatattttgtttctgattgacagtgg 509  Q
    |||||||||||||||||||||| |||||||||||||||    
T  34100 atttttacaaatcatattttgtctctgattgacagtgg 34137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 471 - 509
Target Start/End: Original strand, 21852 - 21890
Alignment:
Q  471 tatttttacaaatcatattttgtttctgattgacagtgg 509  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  21852 tattttgacaaatcatattttgtctctgattgacagtgg 21890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University