View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11614_high_33 (Length: 228)
Name: NF11614_high_33
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 50880205 - 50880401
Alignment:
| Q |
20 |
cttttaacagtgattgaattgaatcaaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatggcagcatcttctccaacatcc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50880205 |
cttttaacagtgattgaattgaatcaaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatggcagcatcttctccaacatcc |
50880304 |
T |
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| Q |
120 |
tcattctactccttcccattcacaacatcccccaaatattctcacctaattctcttctcttgttcctttcatctcaaacaccattcccttcatctca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50880305 |
tcattctactccttcccattcacaacatcccccaaatattctcacctaattctcttctcttgttcctttcatctcaaacaccattccctccatctca |
50880401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 11348269 - 11348086
Alignment:
| Q |
25 |
aacagtgattgaattgaatcaaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatggcagcatcttctccaacatcctcatt |
124 |
Q |
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|||||||||||||||||||||| ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11348269 |
aacagtgattgaattgaatcaagcaaacatttcacaaaagcagtagcaataactccttaacttcaacaaccatggcagcatcttctctaacatcctcatt |
11348170 |
T |
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| Q |
125 |
ctactccttcccattcacaacatcccccaaatattctcacctaattctcttctcttgttcctttcatctcaaacaccattcccttcatctca |
216 |
Q |
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| T |
11348169 |
ctactccttcccattcataacatcccccaa--------acctaattctcttctcttgttcctttcatctcaaacaccataccctccatctca |
11348086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 21728274 - 21728337
Alignment:
| Q |
44 |
caaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatggcagcatct |
107 |
Q |
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| T |
21728274 |
caaacaagcatttcacaaacacagtagcaagaacttcttaacttcaacaaccatggcagcatct |
21728337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 50 - 216
Target Start/End: Complemental strand, 18852157 - 18851991
Alignment:
| Q |
50 |
agcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatggcagcatcttctccaacatcctcattctactccttcccattcacaacatcc |
149 |
Q |
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|||||| ||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18852157 |
agcattgcacaacaacagtagcaatcactccttaacttcaacaaccatggcagcatcttctctaacatcctcattctactccttcccattcacaacatcc |
18852058 |
T |
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| Q |
150 |
cccaaatattctcacctaattctcttctcttgttcctttcatctcaaacaccattcccttcatctca |
216 |
Q |
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| T |
18852057 |
cccaaatcttctcacctaattcccttctattgttcctttcatctcaaacaccataccctccatctca |
18851991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 12630963 - 12631050
Alignment:
| Q |
116 |
atcctcattctactccttcccattcacaacatcccccaaatattctcacctaattctcttctcttgttcctttcatctcaaacaccat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| | |||||||||||||||||||||| |
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| T |
12630963 |
atcctcattctactccttcccattcacaacatcccccaaatcttctcacctaattctcctctcctattcctttcatctcaaacaccat |
12631050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 48081145 - 48081067
Alignment:
| Q |
20 |
cttttaacagtgattgaattgaatcaaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatg |
98 |
Q |
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| T |
48081145 |
cttttaacggtgattgaattgaatcaaacaagcatttcacaaaaacagtaacaataactccttaacttcaacaaccatg |
48081067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 48080526 - 48080459
Alignment:
| Q |
92 |
aaccatggcagcatcttctccaacatcctcattctactccttcccattcacaacatcccccaaatatt |
159 |
Q |
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|||||||||| ||||||||| |||||||||||||||||| || |||||| | ||||||||||||||| |
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| T |
48080526 |
aaccatggcatcatcttctctaacatcctcattctactcatttgcattcatagcatcccccaaatatt |
48080459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 216
Target Start/End: Original strand, 2576400 - 2576490
Alignment:
| Q |
126 |
tactccttcccattcacaacatcccccaaatattctcacctaattctcttctcttgttcctttcatctcaaacaccattcccttcatctca |
216 |
Q |
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||||||||||||||||| ||||||| |||| || |||| ||||| ||| |||||||| |||| ||||||||||||| |||| ||||||| |
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| T |
2576400 |
tactccttcccattcactacatcccttaaatcatcccacccaattcccttatcttgttcttttcctctcaaacaccataccctccatctca |
2576490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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