View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11614_high_6 (Length: 660)

Name: NF11614_high_6
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11614_high_6
NF11614_high_6
[»] chr6 (1 HSPs)
chr6 (18-652)||(219734-220369)


Alignment Details
Target: chr6 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 18 - 652
Target Start/End: Complemental strand, 220369 - 219734
Alignment:
Q  18 cattcctaacagttgctccaatttgctttaaagccgtgtttgactgcatgtgtaaattgaaacaaatgaagttatatatacgtcacattactttctatat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  220369 cattcctaacagttgctccaatttgctttaaagccgtgtttgactgcatgtgtaaattgaaacaaatgaagttatatatacgtcacattaatttctatat 220270  T
Q  118 atagattgtgcaaaagatnnnnnnnnn-ttgtgcaaaatcaaaatatgtcgtgtaaaactctaaacctcatgtccatcacaatatttttgtttaccatat 216  Q
    ||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  220269 atagattgtgcaaaagataaaaaaaaaattgtgcaaaatcaaaatatgtcgtgtaaaactctaaacctcatgtccatcacaatatttttgtttaccatat 220170  T
Q  217 gaatcaaatctttaacctccttatcacttcactccctaactcattcactatcataattgacgatttggaacatcgtcaatttttataattctacaaccat 316  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  220169 gaatcaaatctttaacctccttatcacttcactctctaactcattcactatcataattgacgatttggaacatcgtcaatttttataattctacaaccat 220070  T
Q  317 aattgagattatataaaccacgattaattgcaattctttgcgaatgcgactatatccgcgattgtgattaattgtgtttataatttgttacctcgagaaa 416  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  220069 aattgagattatataaaccacgattaattgcaattcttcgcgaatgcgactatatctgcgattgtgattaattgtgtttataatttgttacctcgagaaa 219970  T
Q  417 tttggctccagcttcaagctcccgctctttggaagaacagttcccacggccggtagtgtataggttttttgcaactgaaaaggtacgcattataatcctc 516  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  219969 tttggctccagcttcaagctcccactctttggaagaacatttcccacgaccggtagtgtatagtttttttgcaactgaaaagctacgcattataatcctc 219870  T
Q  517 cttttgttcttgatttccttgtttagtttcataggttttggcattgatgttaaagtattcaaccttttctgataagcaatcactgccttcacaaactcct 616  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  219869 cttttgttcttgatttccttgtttagtttcatacgttttggcactgatgttaaagtattcagccttttctgaaaagcaatcactgccttcacaaactcct 219770  T
Q  617 acacatttaatattccttaaaatcaaatttcatctc 652  Q
    ||||||||||||||||| ||||||||||||||||||    
T  219769 acacatttaatattcctcaaaatcaaatttcatctc 219734  T

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