View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11614_low_10 (Length: 564)
Name: NF11614_low_10
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 68 - 558
Target Start/End: Complemental strand, 48174739 - 48174250
Alignment:
| Q |
68 |
gacaaatcttccaactaccacagtaccgtaccacgtacacgttgtctccatttcatcttcaat---ggctgattgcatgtacttgtaataagttgtctca |
164 |
Q |
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| T |
48174739 |
gacaaatcttccaactaccacagtacc-----acgtacacgttgtctccatttcatcttcaatattggctgattgcatgtacttgtaataagttgtctca |
48174645 |
T |
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| Q |
165 |
aactaaacaccacaagattgat----gatgttagttataataagatgcttactccaaagttgatttattgaaagaaaagtataagtcaaaatataaccgt |
260 |
Q |
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| T |
48174644 |
aaataaacaccacaagattgatcgatgatgttagttataa---gatgcttactccaaagttgatttattgaaagaaaagtataagtcaaaatataaccgt |
48174548 |
T |
|
| Q |
261 |
aattaaccaaaagaaaacaaaggaaacgttggatccatcctagaatggaacacaaatactgataaaaacatacaaaaacaacaacatatatgcctgaaat |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48174547 |
aattaaccaaaagaaaacaaaggaaacgttggatccatcctagaatggaacacaaatactgataaaa-catacaaaaacaacaacatatatgcctgaaat |
48174449 |
T |
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| Q |
361 |
ccacaaatatcggaatctatgcatgtaaaaggacatgcacgtacctcaaaataatgtccattcaaattctcccccttttctctccgatacaacctcaaca |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48174448 |
ccacaaatatcggaatctatgcatgtaaaaggacatgcacgtacctcaaaataatgtccattcaaattctcccccttttctctccgatacaacctcaaca |
48174349 |
T |
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| Q |
461 |
-nnnnnnnngcattcccatcatcattgcatgcatggcttcctcttcctttcaccttttcttcttgatcattctccttccatttttatagcctttgcttc |
558 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48174348 |
tttttttttgcattcccatcatcattgcatgcatggcttcctcttcctttcaccttttcttcttgatcattctccttccatttttatagcctctgcttc |
48174250 |
T |
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