View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11614_low_14 (Length: 531)

Name: NF11614_low_14
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11614_low_14
NF11614_low_14
[»] chr2 (1 HSPs)
chr2 (9-531)||(1811062-1811591)


Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 9 - 531
Target Start/End: Original strand, 1811062 - 1811591
Alignment:
Q  9 agcataggacgtgtaagggtgcagcaccgagggattcttctcaccgtcaaagggatagtaatcaggtcaggagcaattaagatgcacgaaggagagagga 108  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1811062 agcataggacgtgtaagggtgcagcaccgagggattcttctcactgtcaaagggatagtaatcaggtcaggagcaattaagatgcacgaaggagagagga 1811161  T
Q  109 agtacatgtgccagaaatgcaatggcaggtacatgcgttctcctcttcccctttttctcccactttataatttgcaaggaaaggatcatctattagtcac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1811162 agtacatgtgccagaaatgcaatggcaggtacatgcgttctcctcttcccctttttctcccactttataatttgcaaggaaaggatcatctattagtcac 1811261  T
Q  209 tcttggtcattttatcttttgcaaatattagctgtactattaaatgcttaataattttgatattgtactacagtcatcagtaactattatatttaactct 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1811262 tcttggtcattttatcttttgcaaatattagctgtactattaaatgcttaataattttgttattgtactacagtcatcagtaactattatatttaactct 1811361  T
Q  309 atatatctaatgt-------gacaggcatgcatacatatacaatcctaattcatttttgtacacttacttattttcacaataactttgttctccgtcttt 401  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1811362 atatatctaatgtgacagccgacaggcatgcatacatatacaatcctaattcatttttgtacacttactaattttcacaataactttgttctccgtcttt 1811461  T
Q  402 ttcattaaatgttatcacaagcaagattttaaattgcagtcgtgactacgatttagttgcaacccttcatgttgtggacatatgtggttgatacgattgc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1811462 ttcattaaatgttatcacaagcaagattttaaattgcagtcgtgactacgatttagttgcaacccttcatgttgtggacatatgtggttgatacgattgc 1811561  T
Q  502 aattgcagtcatacaattttcaaaaacact 531  Q
    ||||||||||||||||||||||||||||||    
T  1811562 aattgcagtcatacaattttcaaaaacact 1811591  T

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