View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11614_low_17 (Length: 449)
Name: NF11614_low_17
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 5 - 431
Target Start/End: Original strand, 42225671 - 42226100
Alignment:
| Q |
5 |
gagagagatgaagcttacactggggacaagaacaagaagcccgagatgatatttcctgaagttatgaaaattgtgaagaaaaagatccataagattctaa |
104 |
Q |
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| T |
42225671 |
gagaaagatgaagcttacactggggacaagaacaagaagcccgagatgatatttcctgaagttatgaaaattgtgaagaaaaagatccataagattctaa |
42225770 |
T |
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| Q |
105 |
gaactaagaatattaagaaattatatatgtatacatat----atacacataaattagtagtgtaacaactagaaagtaagagacttgagtaccgacctat |
200 |
Q |
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| T |
42225771 |
gaactaagaatattaagaaattatatatgtatacatatatatatacacataaattagtagtgtaacaactagcaagtaagagacttgagtaccgacctat |
42225870 |
T |
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| Q |
201 |
aacaccaataattgttcgagcaatatgtgctgctgctgcggtcatgatatctccaagctctaaaataaaatgattataagggatgaggtatgaaatgaat |
300 |
Q |
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| T |
42225871 |
aacaccaataattgttcgagcaatatgtgctgctgctgcggtcatgatatctccaagctctaaaataaaatgattataagggatgaggtatgaaatgaat |
42225970 |
T |
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| Q |
301 |
gaaatataatgcaagaaagaggaatcgtgaagaatatatataaaattaaaatgaagctagagctagctatacgaaatgaataggttgatcatatgcatga |
400 |
Q |
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| T |
42225971 |
gaaatataatgcaagaaagaggaatcgtgaagaatatatat-aaattaaaatgaagctagagctagctatacgaaatgaataggttgatcatatgcatga |
42226069 |
T |
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| Q |
401 |
catgtattgtattgctaatgctggttggttc |
431 |
Q |
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| T |
42226070 |
catgtattgtattgctaatgctggttggttc |
42226100 |
T |
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