View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11614_low_2 (Length: 816)
Name: NF11614_low_2
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 666; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 1 - 801
Target Start/End: Complemental strand, 36232007 - 36231211
Alignment:
| Q |
1 |
agcagatgcagcaaatagtttagtttatgaagcaaatgtaagactaagagatccagtttatggatgcatgggtgcaatttcatctttgcaacaacaagtt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36232007 |
agcagatgcagcaaatagtttagtttatgaagcaaatgtaagactaagagatccagtttatggatgcatgggtgcaatttcatctttgcaacaacaagtt |
36231908 |
T |
|
| Q |
101 |
caatcattaataggtgaacttaatgctataagggaagaaatacataaatacaaactcatggaagctaatatgcttccttcttcagaggatgtatcaattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36231907 |
caatcattaataggtgaacttaatgctataagggaagaaatacataaatacaaactcatggaagctaatatgcttccttcttcagaggatgtatcaattg |
36231808 |
T |
|
| Q |
201 |
ctactcttccaccttcaacatcattaccaatgcttccttcttccatttacacacaacagacaaatcctacaagttatagctcaatttcgaatgatcatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36231807 |
ctactcttccaccttcaacatcattaccaatgcttccttcttccatttacacacaacagacaaatcctaccagttatagctcaatttcgaatgatcatat |
36231708 |
T |
|
| Q |
301 |
ttcctattttgattaaatttgcaaacaaaataatgatgataannnnnnnnngttaatgatttaagnnnnnnnnngactatatattagtcatggtatgtat |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
36231707 |
ttcctattttgattaaatttggaaacaaaataatgatgataaattttttttgttaatgatttaag-aaaaaaaagactatatattagtcatggtatgtat |
36231609 |
T |
|
| Q |
401 |
acttggtttttgtttatttttgtactattgatgctcaaaattttccccaagatatatgattggaaagttattgttgattgttagtttctttcttctataa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36231608 |
acttggtttttgtttatttttgtactattgatgctcaaaattttccccaagatatatgattggaaagttattgttgattgttagtttctttcttctataa |
36231509 |
T |
|
| Q |
501 |
ttccttttatgatgaaatcattgaaatgccacttttgctcatattggaaattatattgctccttgatcttgactttatcatgtgatttactaaagaaggn |
600 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36231508 |
ttccttttatgatgaaatcattgaaatgccacttttgctcatattggaaattatattgctccttgatcttgactttatcatgtgatttactaaagaagg- |
36231410 |
T |
|
| Q |
601 |
nnnnnnnnnnnnnnnnnnnnggaatcactcttttcatgattgcttagaaagataggtttattgtgtcaacataacctaaccatcattctttgtcttttga |
700 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36231409 |
--aaaaaaaaaaaaaaaaaaggaatcactcttttcatgattgcttagaaagataggtttattgtgtcaacataacctaaccatcattctttgtcttttga |
36231312 |
T |
|
| Q |
701 |
taataaagttgagcaagacttttcactatatgtctcgatcatttagatttatatatttacgagttctagaatttataatcagtggatgtgggagagtcta |
800 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36231311 |
taataaagttgagcaagacttttcactatatgtctcgatcatttagatttatatatttacgagttctagaatttataatcagtggatgtgggagagtcta |
36231212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 31869052 - 31868948
Alignment:
| Q |
1 |
agcagatgcagcaaatagtttagtttatgaagcaaatgtaagactaagagatccagtttatggatgcatgggtgcaatttcatctttgcaacaacaagtt |
100 |
Q |
| |
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||||||||||||||||||| | ||||||||||| ||| |||| |||||||||| ||||||||||||||||||||||| ||||| || ||||||||||| |
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| T |
31869052 |
agcagatgcagcaaatagtatggtttatgaagctaatttaaggttaagagatcctgtttatggatgcatgggtgcaatatcatcattacaacaacaagtc |
31868953 |
T |
|
| Q |
101 |
caatc |
105 |
Q |
| |
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||||| |
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| T |
31868952 |
caatc |
31868948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 35919667 - 35919729
Alignment:
| Q |
1 |
agcagatgcagcaaatagtttagtttatgaagcaaatgtaagactaagagatccagtttatgg |
63 |
Q |
| |
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||||||||||| ||| |||||||| ||||||||||||| |||| | || |||||||||||||| |
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| T |
35919667 |
agcagatgcagtaaacagtttagtctatgaagcaaatgcaagagtgagggatccagtttatgg |
35919729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 6e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 43200750 - 43200646
Alignment:
| Q |
1 |
agcagatgcagcaaatagtttagtttatgaagcaaatgtaagactaagagatccagtttatggatgcatgggtgcaatttcatctttgcaacaacaagtt |
100 |
Q |
| |
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||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |
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| T |
43200750 |
agcagatgcagcaaatagtcttgtttatgaagcaaatgtgaggctaagagatccagtttatggatgcatgggtgcaatttctgcattgcaacaacaggtt |
43200651 |
T |
|
| Q |
101 |
caatc |
105 |
Q |
| |
|
||||| |
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| T |
43200650 |
caatc |
43200646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 26665865 - 26665914
Alignment:
| Q |
17 |
agtttagtttatgaagcaaatgtaagactaagagatccagtttatggatg |
66 |
Q |
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|||||||||| ||||||||||| |||| | |||||||| ||||||||||| |
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| T |
26665865 |
agtttagtttttgaagcaaatgcaagagtgagagatcctgtttatggatg |
26665914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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