View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11614_low_20 (Length: 394)

Name: NF11614_low_20
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11614_low_20
NF11614_low_20
[»] chr3 (7 HSPs)
chr3 (20-133)||(39142331-39142444)
chr3 (195-286)||(39142179-39142270)
chr3 (287-383)||(34630589-34630684)
chr3 (284-366)||(46906240-46906322)
chr3 (286-337)||(22899519-22899570)
chr3 (288-339)||(34630735-34630786)
chr3 (283-339)||(46905402-46905458)
[»] chr8 (4 HSPs)
chr8 (284-383)||(10756447-10756546)
chr8 (287-383)||(29739909-29740005)
chr8 (283-339)||(10756597-10756653)
chr8 (284-339)||(29740056-29740111)
[»] chr6 (9 HSPs)
chr6 (284-383)||(3962535-3962634)
chr6 (287-383)||(17193843-17193939)
chr6 (287-383)||(25054439-25054535)
chr6 (287-383)||(30780269-30780365)
chr6 (280-339)||(30780416-30780475)
chr6 (284-341)||(17193737-17193794)
chr6 (284-339)||(3962685-3962740)
chr6 (287-339)||(25054586-25054638)
chr6 (287-341)||(19749510-19749563)
[»] chr5 (5 HSPs)
chr5 (286-383)||(11772740-11772837)
chr5 (286-383)||(17534648-17534745)
chr5 (286-339)||(11772888-11772941)
chr5 (286-339)||(17534544-17534597)
chr5 (287-339)||(8881022-8881074)
[»] chr4 (2 HSPs)
chr4 (284-383)||(51268321-51268421)
chr4 (290-339)||(51268472-51268521)
[»] chr7 (1 HSPs)
chr7 (283-365)||(43406290-43406372)
[»] chr2 (2 HSPs)
chr2 (287-337)||(16497713-16497763)
chr2 (285-337)||(11590792-11590844)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 39142444 - 39142331
Alignment:
Q  20 ccaagggcaaaaaatgcaaataagctgcaacacccattttgtgaaaactttgttagatggaaacagccaaaagataactatgttatgtgataagtaaaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39142444 ccaagggcaaaaaatgcaaataagctgcaacacccattttgtgaaaactttgttagatggaaacagccaaaagataagtatgttatgtgataagtaaaaa 39142345  T
Q  120 tagaactaattaca 133  Q
    ||||||||||||||    
T  39142344 tagaactaattaca 39142331  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 39142270 - 39142179
Alignment:
Q  195 aagggtatctatagttcattgttaaagagctccgaaagtgggaaattagagaaatttcattatttgaaagatcttgtgtgtattgtatatat 286  Q
    ||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39142270 aagggtatccacagttcattgttaaagagctccgaaagtaggaaattagagaaatttcattatttgaaagatcttgtgtgtattgtatatat 39142179  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 287 - 383
Target Start/End: Original strand, 34630589 - 34630684
Alignment:
Q  287 gagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 383  Q
    |||||||||||| | ||||| ||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34630589 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctca-cccaatttttaatacatttcaatttcat 34630684  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 284 - 366
Target Start/End: Complemental strand, 46906322 - 46906240
Alignment:
Q  284 tatgagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaattttta 366  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  46906322 tatgagaaatgctaaggacaaaccctcaaacacactctttttacacactccaataataggaagccacctcacccaatttttta 46906240  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 337
Target Start/End: Complemental strand, 22899570 - 22899519
Alignment:
Q  286 tgagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaat 337  Q
    ||||||||||||| | ||||| ||||||||||||||||  ||||||||||||    
T  22899570 tgagaaatgctaaggacaaactctcaaacacactctttcaacacactccaat 22899519  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 34630786 - 34630735
Alignment:
Q  288 agaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataa 339  Q
    ||||||||||| | ||||| ||||||||||||||||  ||||||||||||||    
T  34630786 agaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 34630735  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 46905402 - 46905458
Alignment:
Q  283 atatgagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataa 339  Q
    |||||||||||||||| |  |||| ||||||||||| ||||  ||||||||||||||    
T  46905402 atatgagaaatgctaaggataaactctcaaacacacactttcaacacactccaataa 46905458  T

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Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 284 - 383
Target Start/End: Original strand, 10756447 - 10756546
Alignment:
Q  284 tatgagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 383  Q
    ||||||||||||||| | ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10756447 tatgagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 10756546  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 287 - 383
Target Start/End: Original strand, 29739909 - 29740005
Alignment:
Q  287 gagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 383  Q
    |||||||||||| | ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29739909 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 29740005  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 10756653 - 10756597
Alignment:
Q  283 atatgagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataa 339  Q
    |||||||||||||||| | ||||| ||||||||||||||||  ||||||||||||||    
T  10756653 atatgagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 10756597  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 339
Target Start/End: Complemental strand, 29740111 - 29740056
Alignment:
Q  284 tatgagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataa 339  Q
    ||||||||||||||| | ||||| ||||||||||||||||  ||||||||||||||    
T  29740111 tatgagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 29740056  T

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Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 284 - 383
Target Start/End: Original strand, 3962535 - 3962634
Alignment:
Q  284 tatgagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 383  Q
    ||||||||||||||| | ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3962535 tatgagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 3962634  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 287 - 383
Target Start/End: Complemental strand, 17193939 - 17193843
Alignment:
Q  287 gagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 383  Q
    |||||||||||| | ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17193939 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 17193843  T

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Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 287 - 383
Target Start/End: Original strand, 25054439 - 25054535
Alignment:
Q  287 gagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 383  Q
    |||||||||||| | ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25054439 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 25054535  T

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Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 287 - 383
Target Start/End: Original strand, 30780269 - 30780365
Alignment:
Q  287 gagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 383  Q
    |||||||||||| | ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30780269 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 30780365  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 339
Target Start/End: Complemental strand, 30780475 - 30780416
Alignment:
Q  280 tatatatgagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataa 339  Q
    ||||||||||||||||||| | ||||| ||||||||||||||||  ||||||||||||||    
T  30780475 tatatatgagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 30780416  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 17193737 - 17193794
Alignment:
Q  284 tatgagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataata 341  Q
    ||||||||||||||| | ||||| ||||||||||||||||  ||||||||||||||||    
T  17193737 tatgagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataata 17193794  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 339
Target Start/End: Complemental strand, 3962740 - 3962685
Alignment:
Q  284 tatgagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataa 339  Q
    ||||||||||||||| | ||||| ||||||||||||||||  ||||||||||||||    
T  3962740 tatgagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 3962685  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 25054638 - 25054586
Alignment:
Q  287 gagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataa 339  Q
    |||||||||||| | ||||| ||||||||||||||||  ||||||||||||||    
T  25054638 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 25054586  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 19749510 - 19749563
Alignment:
Q  287 gagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataata 341  Q
    |||||||||||| ||||||||||| ||||||||| ||| |||||||||| |||||    
T  19749510 gagaaatgctaaggtcaaaccctctaacacactc-tttgacacactccagtaata 19749563  T

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Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 286 - 383
Target Start/End: Original strand, 11772740 - 11772837
Alignment:
Q  286 tgagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 383  Q
    ||||||||||||| | ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11772740 tgagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 11772837  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 286 - 383
Target Start/End: Complemental strand, 17534745 - 17534648
Alignment:
Q  286 tgagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 383  Q
    ||||||||||||| | ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17534745 tgagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 17534648  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 11772941 - 11772888
Alignment:
Q  286 tgagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataa 339  Q
    ||||||||||||| | ||||| ||||||||||||||||  ||||||||||||||    
T  11772941 tgagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 11772888  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 17534544 - 17534597
Alignment:
Q  286 tgagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataa 339  Q
    ||||||||||||| | ||||| ||||||||||||||||  ||||||||||||||    
T  17534544 tgagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 17534597  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 8881022 - 8881074
Alignment:
Q  287 gagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataa 339  Q
    |||||||||||| | ||||| ||||||||||||||||  ||||||||||||||    
T  8881022 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 8881074  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 284 - 383
Target Start/End: Original strand, 51268321 - 51268421
Alignment:
Q  284 tatgagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataataggaagccacctcacccc-aatttttaatacatttcaatttca 382  Q
    ||||||||||||||| | ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  51268321 tatgagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaaatttttaatacatttcaatttca 51268420  T
Q  383 t 383  Q
    |    
T  51268421 t 51268421  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 51268521 - 51268472
Alignment:
Q  290 aaatgctaaagtcaaaccctcaaacacactctttttacacactccaataa 339  Q
    ||||||||| | ||||| ||||||||||||||||  ||||||||||||||    
T  51268521 aaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 51268472  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 283 - 365
Target Start/End: Complemental strand, 43406372 - 43406290
Alignment:
Q  283 atatgagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaattttt 365  Q
    |||||||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  43406372 atatgagaaatgctaaggataaaccctcaaacacactcttttgacacactccaataataggaagccacctcacctcaattttt 43406290  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 337
Target Start/End: Complemental strand, 16497763 - 16497713
Alignment:
Q  287 gagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaat 337  Q
    ||||||||||| ||||| ||| || ||||||||||||| ||||||||||||    
T  16497763 gagaaatgctagagtcacaccatctaacacactcttttaacacactccaat 16497713  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 337
Target Start/End: Complemental strand, 11590844 - 11590792
Alignment:
Q  285 atgagaaatgctaaagtcaaaccctcaaacacactctttttacacactccaat 337  Q
    |||||||||||||  |||| || ||| ||||||||||||| ||||||||||||    
T  11590844 atgagaaatgctatggtcacactctctaacacactcttttgacacactccaat 11590792  T

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