View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11614_low_22 (Length: 370)
Name: NF11614_low_22
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 23333492 - 23333847
Alignment:
| Q |
1 |
cattaagcaagccaacgaaatcatttgaattagggattttgtccaacgtaattcagcatattataatgattgtttcatcagaaagcagttgacatataaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23333492 |
cattaagcaagccaacgaaatcatttgaattagggattttgtccaacgtaagtcagcatattataatgattgttccatcagaaagcagttgacatataaa |
23333591 |
T |
|
| Q |
101 |
aaatcacttacagttgcggtctcaagctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333592 |
aaatcacttacagttgcggtctcaagctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctg |
23333691 |
T |
|
| Q |
201 |
aggtaacgacaatgtgtacatttttcctggtaaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctctttggggga |
300 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23333692 |
aggcaacgacaatgtgtacatttttcctggtaaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctcttgggggga |
23333791 |
T |
|
| Q |
301 |
gtactgcttcagctgcattctggcacacaattttatcggtcaacttcgtgatgtcc |
356 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
23333792 |
gtactgcttcagctgcattccggcacacaattttatcggtcaacttcgttatgtcc |
23333847 |
T |
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