View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11614_low_24 (Length: 362)
Name: NF11614_low_24
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 347
Target Start/End: Original strand, 49755651 - 49755988
Alignment:
| Q |
10 |
gagatgaaagaaaacgaagagttccattggccgttggattgaaaagcaagagacagaagagagtactggttaccggtggagctggtttcgttggaagtca |
109 |
Q |
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| T |
49755651 |
gagatgaaagaaaacgaagagttccattggccgttggattgaaaagcaagagacagaagagagtactggttaccggtggagctggtttcgttggaagtca |
49755750 |
T |
|
| Q |
110 |
tcttgttgatcgtttgattgaaagaggtgataatgtgatcgtgattgataattattttactggaaggaaagagaacgttgttcatcatcttggtaatccc |
209 |
Q |
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| T |
49755751 |
tcttgtggatcgtttgattgaaagaggtgataatgtgatcgtgattgataattattttactggaaggaaagagaatgttgttcatcatattggtaatccc |
49755850 |
T |
|
| Q |
210 |
aattttgaacttattagacatgatgttgttgaacctattcttcttgaagttgatcagatctatcacttggcttgccctgcttcccctgttcattacaagt |
309 |
Q |
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| T |
49755851 |
aattttgaacttattagacatgatgttgttgaacctattcttcttgaagttgatcagatctatcacttggcttgccctgcttcccctgttcattacaagt |
49755950 |
T |
|
| Q |
310 |
ttaatcctgtcaagaccatcatatcctttttccaaatt |
347 |
Q |
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| T |
49755951 |
ttaatcctgtcaagaccatcatatcctttttccaaatt |
49755988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 132 - 341
Target Start/End: Complemental strand, 39567496 - 39567287
Alignment:
| Q |
132 |
agaggtgataatgtgatcgtgattgataattattttactggaaggaaagagaacgttgttcatcatcttggtaatcccaattttgaacttattagacatg |
231 |
Q |
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| T |
39567496 |
agaggggatagtgtgattgttgttgataatttcttcaccggtagaaaagagaacgttatgcatcattttggtaatccgagatttgagcttattcgacacg |
39567397 |
T |
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| Q |
232 |
atgttgttgaacctattcttcttgaagttgatcagatctatcacttggcttgccctgcttcccctgttcattacaagtttaatcctgtcaagaccatcat |
331 |
Q |
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| || ||||| ||| |||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||| || || ||||| || ||||| |
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| T |
39567396 |
acgtcgttgagcctcttcttcttgaagttgatcagatctatcatcttgcttgtcctgcttctcctgttcattacaagttcaaccccgtcaaaactatcat |
39567297 |
T |
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| Q |
332 |
atcctttttc |
341 |
Q |
| |
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|||||||||| |
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| T |
39567296 |
atcctttttc |
39567287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 76 - 340
Target Start/End: Original strand, 29126946 - 29127210
Alignment:
| Q |
76 |
tggttaccggtggagctggtttcgttggaagtcatcttgttgatcgtttgattgaaagaggtgataatgtgatcgtgattgataattattttactggaag |
175 |
Q |
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||||||||||||| |||||||| |||||||||||||| |||||| ||||||| ||||| || |||| || || |||||||||| ||||||||| || |
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| T |
29126946 |
tggttaccggtggtgctggttttgttggaagtcatctggttgataagttgattggtagagggaatgatgttattgttattgataatttttttactggtag |
29127045 |
T |
|
| Q |
176 |
gaaagagaacgttgttcatcatcttggtaatcccaattttgaacttattagacatgatgttgttgaacctattcttcttgaagttgatcagatctatcac |
275 |
Q |
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| T |
29127046 |
gaaagagaatttggttcatttgtttgggaaccctaggtttgagttaattcgtcatgatgttgttgatccgattttgcttgaggttgatcagatctatcat |
29127145 |
T |
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| Q |
276 |
ttggcttgccctgcttcccctgttcattacaagtttaatcctgtcaagaccatcatatccttttt |
340 |
Q |
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| || || |||||||| ||||||||||| |||| ||| ||| ||||||| |||||||||||||| |
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| T |
29127146 |
cttgcctgtcctgcttcacctgttcattataagtataaccctatcaagacaatcatatccttttt |
29127210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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