View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11614_low_25 (Length: 358)
Name: NF11614_low_25
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 5950870 - 5950549
Alignment:
| Q |
20 |
agcagagatatcaatgctacttccagataggacgaacagttatccagacgacgagaataatgcaagtcctcgtcgttatcatcattttccctctgtctct |
119 |
Q |
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| T |
5950870 |
agcagagatatcaatgctacttccagataggacgaacagttatcaagacgacgagaataatgcaagtcctcgtcgttatcatcattttccctctgtctct |
5950771 |
T |
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| Q |
120 |
tctgtttcatcgtcacaagaatcattgtcgggtgcagtcaatagagctgatgacatatcaaatggatatcgctggcaccatggtacgtcttctttttccc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5950770 |
tctgtttcatcgtcacaagaatcattgtcgggtgcagtcaatagagttgatgacatatcaaatggatatcgctggcaccctggtacgtcttctttttccc |
5950671 |
T |
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| Q |
220 |
ttcacaagctatgttgtggatgtcctatttcaatgatgtcctgaaatgattgacctgataaactgtttttgtagatgatacgttcgatgatgacagctcg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
5950670 |
ttcacaagctatgttgtggatgtcctatttcaatgatgtcctgaaatgattgacctgataaactgtttttgtagatgatacgtttgattatgacagctcg |
5950571 |
T |
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| Q |
320 |
ttatgctcttcatatacatatt |
341 |
Q |
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|||||||||||||||||||||| |
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| T |
5950570 |
ttatgctcttcatatacatatt |
5950549 |
T |
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